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XROOTD-L  May 2011

XROOTD-L May 2011

Subject:

ATLAS segfault

From:

Patrick McGuigan <[log in to unmask]>

Date:

19 May 2011 17:49:04 -0500Thu, 19 May 2011 17:49:04 -0500

Content-Type:

multipart/mixed

Parts/Attachments:

Parts/Attachments

text/plain (17 lines) , fault.txt (598 lines)

Hello,

A user's job seg-faulted when running in our system and produced the attached stack trace.
  The information in the stack trace indicates that the problems seemed to occur when the
xrootd client was trying to allocate additional memory (Thread 1). The code should have
been using the client libraries associated with the ROOT version packaged with ATLAS
release. The root version is labelled as "Version 5.26/00e 13 October 2010"

I am curious if my diagnosis is correct, and if anyone has seen something similar before?

I reran the job on separate machine and it seemed to run fine.

Regards,

Patrick


ToolSvc.InDetGe...WARNING INFO message limit (500) reached for ToolSvc.InDetGeometryManagerTool. Suppressing further output.
InDetGlobalSolv... INFO allocating matrix and vector with nDoF = 1188
InDetGlobalSolv... INFO After Matrix and Vector allocation
InDetGlobalSolv... INFO set path to ./
InDetGlobalSolv... INFO Info to obtained from from TFiles
InDetGlobalSolv... INFO OPENING TFILES
InDetGlobalSolv...WARNING Reading File number 0, root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00001.AlignmentTFile.root
InDetGlobalSolv... INFO Reading matrix
InDetGlobalSolv... INFO Reading hitmap
InDetGlobalSolv...WARNING Reading File number 1, root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00002.AlignmentTFile.root
InDetGlobalSolv... INFO Reading matrix
InDetGlobalSolv... INFO Reading hitmap
InDetGlobalSolv...WARNING Reading File number 2, root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00003.AlignmentTFile.root
InDetGlobalSolv... INFO Reading matrix
InDetGlobalSolv... INFO Reading hitmap
InDetGlobalSolv...WARNING Reading File number 3, root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00004.AlignmentTFile.root
InDetGlobalSolv... INFO Reading matrix
InDetGlobalSolv... INFO Reading hitmap
InDetGlobalSolv...WARNING Reading File number 4, root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00005.AlignmentTFile.root
InDetGlobalSolv... INFO Reading matrix
InDetGlobalSolv... INFO Reading hitmap
InDetGlobalSolv...WARNING Reading File number 5, root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00006.AlignmentTFile.root
InDetGlobalSolv... INFO Reading matrix
InDetGlobalSolv... INFO Reading hitmap
-------------------------------------------------------------------------------------
Core dump from CoreDumpSvc on compute-6-25.local at Sat May 14 20:47:30 2011

Caught signal 11(Segmentation fault). Details:
  errno = 0, code = 1 (address not mapped to object)
  pid = 926, uid = 0
  value = (72, 0x48)
  vmem = 298.215 MB
  rss = 214.309 MB
  total-ram = 8052.97 MB
  free-ram = 27.6562 MB
  buffer-ram= 25.543 MB
  total-swap= 10236.7 MB
  free-swap = 10203.2 MB
  addr = 0x39e

Event counter: 0
-------------------------------------------------------------------------------------
Traceback (most recent call last):
  File "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/jobOptions/AthenaCommon/runbatch.py", line 11, in <module>
    theApp.run() # runs until theApp.EvtMax events reached
  File "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/python/AthenaCommon/AppMgr.py", line 596, in run
    sc = self.start()
  File "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/python/AthenaCommon/AppMgr.py", line 643, in start
    sc = self.getHandle().start()
  File "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/python/GaudiPython/Bindings.py", line 925, in start
    return self._appmgr.start()
SystemError: problem in C++; program state has been reset
InDetGlobalSolve INFO AlignAlg::finalize()
OutputCondition... INFO Finalize: preparing to write conditions objects
DbSession Info Open DbSession
Domain[ROOT_All] Info > Access DbDomain UPDATE [ROOT_All]
OutputCondition... INFO Identified a total of 2 objects to write out:
OutputCondition... INFO 0: AlignableTransformContainer#/Indet/Align#/Indet/Align
ClassIDSvc INFO getRegistryEntries: read 1283 CLIDRegistry entries for module ALL
OutputCondition... INFO 1: AlignableTransformContainer#/TRT/Align#/TRT/Align
DbSession Info Open DbSession
Domain[ROOT_All] Info > Access DbDomain READ [ROOT_All]
Domain[ROOT_All] Info -> Access DbDatabase READ [ROOT_All] 56AAD2D1-754E-E011-83BB-003048F0DFBC
Domain[ROOT_All] Info initial_AlignmentConstants.root
 the content of file input1.txt: root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00001.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00002.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00003.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00004.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00005.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00006.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00007.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00008.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00009.AlignmentTFile.root,root://xrdb.local:1094//xrd/atlasuserdisk/group.det-indet.Iter00_Accumulate_outDS_Customed_Part00_20110515021507.110515021603_sub020507198/group.det-indet.20360_004388.EXT0._00010.AlignmentTFile.root
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<bool>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<char>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<short>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<long>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-char>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-short>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-int>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-long>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<float>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<double>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<bool>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<char>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<short>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<long>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-char>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-short>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-int>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-long>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<float>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<double>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<int>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<long>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<float>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<double>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<string>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<string,int>=map.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<string,float>=map.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<string,double>=map.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<int,int>=map2.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.multimap<string,int>=multimap.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<int>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<long>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<float>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<double>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<string>=set.dll> for level 0; ignored
WARNING: $POOL_CATALOG is not defined
using default `xmlcatalog_file:PoolFileCatalog.xml'
/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/python/GaudiPython/Bindings.py:660: DeprecationWarning: object.__new__() takes no parameters
  newobj = object.__new__( cls, *args, **kwargs )
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<bool>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<char>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<short>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<long>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-char>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-short>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-int>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<unsigned-long>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<float>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.vector<double>=vector.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<int>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<long>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<float>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<double>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.list<string>=list.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<string,int>=map.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<string,float>=map.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<string,double>=map.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.map<int,int>=map2.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.multimap<string,int>=multimap.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<int>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<long>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<float>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<double>=set.dll> for level 0; ignored
Warning in <TEnvRec::ChangeValue>: duplicate entry <Library.set<string>=set.dll> for level 0; ignored

 *** Break *** segmentation violation



===========================================================
There was a crash (#8 0x55b14a4d in SigHandler(ESignals) ()).
This is the entire stack trace of all threads:
===========================================================

Thread 10 (Thread 0x5a0b1b90 (LWP 14894)):
#0 0x00c59638 in timer_helper_thread () from /lib/librt.so.1
#1 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#2 0x00a61f6e in clone () from /lib/libc.so.6

Thread 9 (Thread 0x5e88bb90 (LWP 14898)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a21c06 in nanosleep () from /lib/libc.so.6
#2 0x00a21a2f in sleep () from /lib/libc.so.6
#3 0x5e61e11e in GarbageCollectorThread (
    arg=AttributeError: 'module' object has no attribute 'objfile_hook'
#4 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xdf8f27c)
    at XrdClientThread.cc:32
#5 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#6 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#7 0x00a61f6e in clone () from /lib/libc.so.6

Thread 8 (Thread 0x5ea8cb90 (LWP 14899)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a58293 in poll () from /lib/libc.so.6
#2 0x5e606c50 in XrdClientSock::RecvRaw (this=0xe2d25a0, buffer=0xf16ae94,
    length=8, substreamid=-1, usedsubstreamid=0x5ea8c164)
    at XrdClientSock.cc:131
#3 0x5e628b68 in XrdClientPhyConnection::ReadRaw (this=0xd726340,
    buf=0xf16ae94, len=8, substreamid=-1, usedsubstreamid=0x5ea8c164)
    at XrdClientPhyConnection.cc:362
#4 0x5e624f0c in XrdClientMessage::ReadRaw (this=0xf16ae70, phy=0xd726340)
    at XrdClientMessage.cc:152
#5 0x5e628348 in XrdClientPhyConnection::BuildMessage (this=0xd726340,
    IgnoreTimeouts=true, Enqueue=true) at XrdClientPhyConnection.cc:443
#6 0x5e62bd87 in SocketReaderThread (arg=0xd726340, thr=0xdf8fd68)
    at XrdClientPhyConnection.cc:61
#7 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xdf8fd74)
    at XrdClientThread.cc:32
#8 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#9 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#10 0x00a61f6e in clone () from /lib/libc.so.6

Thread 7 (Thread 0x5ec8db90 (LWP 14900)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a58293 in poll () from /lib/libc.so.6
#2 0x5e606c50 in XrdClientSock::RecvRaw (this=0xe2d2630, buffer=0xf19dec4,
    length=8, substreamid=-1, usedsubstreamid=0x5ec8d164)
    at XrdClientSock.cc:131
#3 0x5e628b68 in XrdClientPhyConnection::ReadRaw (this=0xd726600,
    buf=0xf19dec4, len=8, substreamid=-1, usedsubstreamid=0x5ec8d164)
    at XrdClientPhyConnection.cc:362
#4 0x5e624f0c in XrdClientMessage::ReadRaw (this=0xf19dea0, phy=0xd726600)
    at XrdClientMessage.cc:152
#5 0x5e628348 in XrdClientPhyConnection::BuildMessage (this=0xd726600,
    IgnoreTimeouts=true, Enqueue=true) at XrdClientPhyConnection.cc:443
#6 0x5e62bd87 in SocketReaderThread (arg=0xd726600, thr=0xe1a7e70)
    at XrdClientPhyConnection.cc:61
#7 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xe1a7e7c)
    at XrdClientThread.cc:32
#8 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#9 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#10 0x00a61f6e in clone () from /lib/libc.so.6

Thread 6 (Thread 0x5ee8eb90 (LWP 14901)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a58293 in poll () from /lib/libc.so.6
#2 0x5e606c50 in XrdClientSock::RecvRaw (this=0xd8fd5a0, buffer=0xf1ef4d4,
    length=8, substreamid=-1, usedsubstreamid=0x5ee8e164)
    at XrdClientSock.cc:131
#3 0x5e628b68 in XrdClientPhyConnection::ReadRaw (this=0xd726080,
    buf=0xf1ef4d4, len=8, substreamid=-1, usedsubstreamid=0x5ee8e164)
    at XrdClientPhyConnection.cc:362
#4 0x5e624f0c in XrdClientMessage::ReadRaw (this=0xf1ef4b0, phy=0xd726080)
    at XrdClientMessage.cc:152
#5 0x5e628348 in XrdClientPhyConnection::BuildMessage (this=0xd726080,
    IgnoreTimeouts=true, Enqueue=true) at XrdClientPhyConnection.cc:443
#6 0x5e62bd87 in SocketReaderThread (arg=0xd726080, thr=0xe1a7af8)
    at XrdClientPhyConnection.cc:61
#7 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xe1a7b04)
    at XrdClientThread.cc:32
#8 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#9 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#10 0x00a61f6e in clone () from /lib/libc.so.6

Thread 5 (Thread 0x5f08fb90 (LWP 14902)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a58293 in poll () from /lib/libc.so.6
#2 0x5e606c50 in XrdClientSock::RecvRaw (this=0xd84dea0, buffer=0xf1efad4,
    length=8, substreamid=-1, usedsubstreamid=0x5f08f164)
    at XrdClientSock.cc:131
#3 0x5e628b68 in XrdClientPhyConnection::ReadRaw (this=0xd725dc0,
    buf=0xf1efad4, len=8, substreamid=-1, usedsubstreamid=0x5f08f164)
    at XrdClientPhyConnection.cc:362
#4 0x5e624f0c in XrdClientMessage::ReadRaw (this=0xf1efab0, phy=0xd725dc0)
    at XrdClientMessage.cc:152
#5 0x5e628348 in XrdClientPhyConnection::BuildMessage (this=0xd725dc0,
    IgnoreTimeouts=true, Enqueue=true) at XrdClientPhyConnection.cc:443
#6 0x5e62bd87 in SocketReaderThread (arg=0xd725dc0, thr=0xdf5c2d0)
    at XrdClientPhyConnection.cc:61
#7 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xdf5c2dc)
    at XrdClientThread.cc:32
#8 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#9 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#10 0x00a61f6e in clone () from /lib/libc.so.6

Thread 4 (Thread 0x5f290b90 (LWP 14903)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a58293 in poll () from /lib/libc.so.6
#2 0x5e606c50 in XrdClientSock::RecvRaw (this=0xd84df30, buffer=0xf1efec4,
    length=8, substreamid=-1, usedsubstreamid=0x5f290164)
    at XrdClientSock.cc:131
#3 0x5e628b68 in XrdClientPhyConnection::ReadRaw (this=0xd725b00,
    buf=0xf1efec4, len=8, substreamid=-1, usedsubstreamid=0x5f290164)
    at XrdClientPhyConnection.cc:362
#4 0x5e624f0c in XrdClientMessage::ReadRaw (this=0xf1efea0, phy=0xd725b00)
    at XrdClientMessage.cc:152
#5 0x5e628348 in XrdClientPhyConnection::BuildMessage (this=0xd725b00,
    IgnoreTimeouts=true, Enqueue=true) at XrdClientPhyConnection.cc:443
#6 0x5e62bd87 in SocketReaderThread (arg=0xd725b00, thr=0xdf5c348)
    at XrdClientPhyConnection.cc:61
#7 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xdf5c354)
    at XrdClientThread.cc:32
#8 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#9 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#10 0x00a61f6e in clone () from /lib/libc.so.6

Thread 3 (Thread 0x5f491b90 (LWP 14904)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a58293 in poll () from /lib/libc.so.6
#2 0x5e606c50 in XrdClientSock::RecvRaw (this=0xdbe2f30, buffer=0xf1dd4d4,
    length=8, substreamid=-1, usedsubstreamid=0x5f491164)
    at XrdClientSock.cc:131
#3 0x5e628b68 in XrdClientPhyConnection::ReadRaw (this=0xd725840,
    buf=0xf1dd4d4, len=8, substreamid=-1, usedsubstreamid=0x5f491164)
    at XrdClientPhyConnection.cc:362
#4 0x5e624f0c in XrdClientMessage::ReadRaw (this=0xf1dd4b0, phy=0xd725840)
    at XrdClientMessage.cc:152
#5 0x5e628348 in XrdClientPhyConnection::BuildMessage (this=0xd725840,
    IgnoreTimeouts=true, Enqueue=true) at XrdClientPhyConnection.cc:443
#6 0x5e62bd87 in SocketReaderThread (arg=0xd725840, thr=0xe2bddf8)
    at XrdClientPhyConnection.cc:61
#7 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xe2bde04)
    at XrdClientThread.cc:32
#8 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#9 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#10 0x00a61f6e in clone () from /lib/libc.so.6

Thread 2 (Thread 0x5f692b90 (LWP 14905)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a58293 in poll () from /lib/libc.so.6
#2 0x5e606c50 in XrdClientSock::RecvRaw (this=0xdbc8000, buffer=0xf1ddb04,
    length=8, substreamid=-1, usedsubstreamid=0x5f692164)
    at XrdClientSock.cc:131
#3 0x5e628b68 in XrdClientPhyConnection::ReadRaw (this=0xd725580,
    buf=0xf1ddb04, len=8, substreamid=-1, usedsubstreamid=0x5f692164)
    at XrdClientPhyConnection.cc:362
#4 0x5e624f0c in XrdClientMessage::ReadRaw (this=0xf1ddae0, phy=0xd725580)
    at XrdClientMessage.cc:152
#5 0x5e628348 in XrdClientPhyConnection::BuildMessage (this=0xd725580,
    IgnoreTimeouts=true, Enqueue=true) at XrdClientPhyConnection.cc:443
#6 0x5e62bd87 in SocketReaderThread (arg=0xd725580, thr=0xe2bd048)
    at XrdClientPhyConnection.cc:61
#7 0x5e6319e9 in XrdClientThreadDispatcher (arg=0xe2bd054)
    at XrdClientThread.cc:32
#8 0x5e5d754f in XrdSysThread_Xeq ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#9 0x00b3c832 in start_thread () from /lib/libpthread.so.0
#10 0x00a61f6e in clone () from /lib/libc.so.6

Thread 1 (Thread 0x55691290 (LWP 14869)):
#0 0xffffe405 in __kernel_vsyscall ()
#1 0x00a2173b in waitpid () from /lib/libc.so.6
#2 0x009c607b in do_system () from /lib/libc.so.6
#3 0x009c6412 in system () from /lib/libc.so.6
#4 0x00b44ead in system () from /lib/libpthread.so.0
#5 0x55b0e31d in TUnixSystem::Exec(char const*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCore.so
#6 0x55b13d56 in TUnixSystem::StackTrace() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCore.so
#7 0x55b1494d in TUnixSystem::DispatchSignals(ESignals) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCore.so
#8 0x55b14a4d in SigHandler(ESignals) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCore.so
#9 0x55b0af62 in sighandler(int) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCore.so
#10 0x59d9cc5c in CoreDumpSvcHandler::action(int, siginfo*, void*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libAthenaServices.so
#11 <signal handler called>
#12 SLL_Pop (size=2048) at src/tcmalloc.cc:390
#13 TCMalloc_ThreadCache_FreeList::Pop (size=2048) at src/tcmalloc.cc:1432
#14 TCMalloc_ThreadCache::Allocate (size=2048) at src/tcmalloc.cc:2006
#15 do_malloc (size=2048) at src/tcmalloc.cc:2781
#16 malloc (size=2048) at src/tcmalloc.cc:3002
#17 0x5e5ff5c0 in XrdClientVector<XrdClientMStream::ReadChunk>::Init (
    this=0xe92e000, offset=0, len=1024, updatecounters=false)
    at ../XrdClient/XrdClientVector.hh:64
#18 XrdClientVector (this=0xe92e000, offset=0, len=1024, updatecounters=false)
    at ../XrdClient/XrdClientVector.hh:139
#19 XrdClient::Read_Async (this=0xe92e000, offset=0, len=1024,
    updatecounters=false) at XrdClient.cc:1684
#20 0x5e601e68 in XrdClient::Read (this=0xe92e000, buf=0xf121400, offset=238,
    len=450) at XrdClient.cc:555
#21 0x5e5bd6d4 in TXNetFile::ReadBuffer(char*, int) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#22 0x566f100e in TKey::ReadFile() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libRIO.so
#23 0x566edd66 in TKey::ReadObj() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libRIO.so
#24 0x566cce19 in TDirectoryFile::Get(char const*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libRIO.so
#25 0x5d3177bc in Trk::MatrixTool::accumulateFromTFiles() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkAlignGenToolsLib.so
#26 0x5d318945 in Trk::MatrixTool::accumulateFromFiles() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkAlignGenToolsLib.so
#27 0x5e074637 in Trk::GlobalChi2AlignTool::accumulateFromFiles() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkGlobalChi2AlignTools.so
#28 0x5cd727cc in Trk::AlignAlg::start() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkAlignGenAlgs.so
#29 0x583d1bf0 in Algorithm::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#30 0x5cd26e2a in AthSequencer::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSequencer.so
#31 0x583d1bf0 in Algorithm::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#32 0x5cd26e2a in AthSequencer::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSequencer.so
#33 0x583d1bf0 in Algorithm::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#34 0x583dba77 in MinimalEventLoopMgr::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#35 0x5836c208 in Service::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#36 0x595fc432 in ServiceManager::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSvc.so
#37 0x595d76e4 in ApplicationMgr::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSvc.so
#38 0x58cc826d in (anonymous namespace)::method_7165(void*, void*, std::vector<void*, std::allocator<void*> > const&, void*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernelDict.so
#39 0x5789c437 in ROOT::Cintex::Method_stub_with_context(ROOT::Cintex::StubContext_t*, G__value*, char const*, G__param*, int) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCintex.so
#40 0x593d0034 in ?? ()
#41 0x5610a512 in Cint::G__CallFunc::Execute(void*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCint.so
#42 0x55897cec in PyROOT::TRootObjectByValueExecutor::Execute(Cint::G__CallFunc*, void*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/sw/lcg/app/releases/ROOT/5.26.00e_python2.6/i686-slc5-gcc43-opt/root/lib/libPyROOT.so
#43 0x5589dc24 in PyROOT::TMethodHolder<PyROOT::TScopeAdapter, PyROOT::TMemberAdapter>::CallSafe(void*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/sw/lcg/app/releases/ROOT/5.26.00e_python2.6/i686-slc5-gcc43-opt/root/lib/libPyROOT.so
#44 0x5589ddbc in PyROOT::TMethodHolder<PyROOT::TScopeAdapter, PyROOT::TMemberAdapter>::Execute(void*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/sw/lcg/app/releases/ROOT/5.26.00e_python2.6/i686-slc5-gcc43-opt/root/lib/libPyROOT.so
#45 0x5589ca92 in PyROOT::TMethodHolder<PyROOT::TScopeAdapter, PyROOT::TMemberAdapter>::operator()(PyROOT::ObjectProxy*, _object*, _object*, long) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/sw/lcg/app/releases/ROOT/5.26.00e_python2.6/i686-slc5-gcc43-opt/root/lib/libPyROOT.so
#46 0x558a3859 in PyROOT::(anonymous namespace)::mp_call(PyROOT::MethodProxy*, _object*, _object*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/sw/lcg/app/releases/ROOT/5.26.00e_python2.6/i686-slc5-gcc43-opt/root/lib/libPyROOT.so
#47 0x0805d88c in PyObject_Call (func=0x9c0692c, arg=0x82ac02c, kw=0x0)
    at Objects/abstract.c:2492
#48 0x080d969d in do_call (f=0x9ec584c, throwflag=0) at Python/ceval.c:3968
#49 call_function (f=0x9ec584c, throwflag=0) at Python/ceval.c:3773
#50 PyEval_EvalFrameEx (f=0x9ec584c, throwflag=0) at Python/ceval.c:2412
#51 0x080dcb7b in fast_function (f=0xe01c70c, throwflag=0)
    at Python/ceval.c:3836
#52 call_function (f=0xe01c70c, throwflag=0) at Python/ceval.c:3771
#53 PyEval_EvalFrameEx (f=0xe01c70c, throwflag=0) at Python/ceval.c:2412
#54 0x080dcb7b in fast_function (f=0x9ec920c, throwflag=0)
    at Python/ceval.c:3836
#55 call_function (f=0x9ec920c, throwflag=0) at Python/ceval.c:3771
#56 PyEval_EvalFrameEx (f=0x9ec920c, throwflag=0) at Python/ceval.c:2412
#57 0x080ddc8c in PyEval_EvalCodeEx (co=0x8535a40, globals=0x8534934,
    locals=0x0, args=0x9bcbbc4, argcount=1, kws=0x9bcbbc8, kwcount=0,
    defs=0x867d358, defcount=1, closure=0x0) at Python/ceval.c:3000
#58 0x080dc329 in fast_function (f=0x9bcba8c, throwflag=0)
    at Python/ceval.c:3846
#59 call_function (f=0x9bcba8c, throwflag=0) at Python/ceval.c:3771
#60 PyEval_EvalFrameEx (f=0x9bcba8c, throwflag=0) at Python/ceval.c:2412
#61 0x080ddc8c in PyEval_EvalCodeEx (co=0x9bd7578, globals=0x82dd46c,
    locals=0x82dd46c, args=0x0, argcount=0, kws=0x0, kwcount=0, defs=0x0,
    defcount=0, closure=0x0) at Python/ceval.c:3000
#62 0x080dddd3 in PyEval_EvalCode (co=0x9bd7578, globals=0x82dd46c,
    locals=0x82dd46c) at Python/ceval.c:541
#63 0x080fe044 in run_mod (fp=0x9b3ddc0,
    filename=0x9dddb7c "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/jobOptions/AthenaCommon/runbatch.py",
    start=257, globals=0x82dd46c, locals=0x82dd46c, closeit=1, flags=0x0)
    at Python/pythonrun.c:1339
#64 PyRun_FileExFlags (fp=0x9b3ddc0,
    filename=0x9dddb7c "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/jobOptions/AthenaCommon/runbatch.py",
    start=257, globals=0x82dd46c, locals=0x82dd46c, closeit=1, flags=0x0)
    at Python/pythonrun.c:1325
#65 0x080d4900 in builtin_execfile (self=0x0, args=0x9bda8ec)
    at Python/bltinmodule.c:794
#66 0x081391bd in PyCFunction_Call (func=0x82c964c, arg=0x9bda8ec, kw=0x0)
    at Objects/methodobject.c:81
#67 0x080dbd09 in call_function (f=0x9bcb54c, throwflag=0)
    at Python/ceval.c:3750
#68 PyEval_EvalFrameEx (f=0x9bcb54c, throwflag=0) at Python/ceval.c:2412
#69 0x080ddc8c in PyEval_EvalCodeEx (co=0x849bcc8, globals=0x850335c,
    locals=0x0, args=0x9bdfdd8, argcount=2, kws=0x0, kwcount=0, defs=0x0,
    defcount=0, closure=0x0) at Python/ceval.c:3000
#70 0x08137caa in function_call (func=0x850264c, arg=0x9bdfdcc, kw=0x0)
    at Objects/funcobject.c:524
#71 0x0805d88c in PyObject_Call (func=0x850264c, arg=0x9bdfdcc, kw=0x0)
    at Objects/abstract.c:2492
#72 0x08064935 in instancemethod_call (func=0x850264c, arg=0x9bdfdcc, kw=0x0)
    at Objects/classobject.c:2579
#73 0x0805d88c in PyObject_Call (func=0x9bda9b4, arg=0x9bdf32c, kw=0x0)
    at Objects/abstract.c:2492
#74 0x080b29e3 in slot_tp_call (self=0x84cfeac, args=0x9bdf32c, kwds=0x0)
    at Objects/typeobject.c:5373
#75 0x0805d88c in PyObject_Call (func=0x84cfeac, arg=0x9bdf32c, kw=0x0)
    at Objects/abstract.c:2492
#76 0x080d969d in do_call (f=0x9bcbc4c, throwflag=0) at Python/ceval.c:3968
#77 call_function (f=0x9bcbc4c, throwflag=0) at Python/ceval.c:3773
#78 PyEval_EvalFrameEx (f=0x9bcbc4c, throwflag=0) at Python/ceval.c:2412
#79 0x080ddc8c in PyEval_EvalCodeEx (co=0x9bd7140, globals=0x82dd46c,
    locals=0x82dd46c, args=0x0, argcount=0, kws=0x0, kwcount=0, defs=0x0,
    defcount=0, closure=0x0) at Python/ceval.c:3000
#80 0x080dddd3 in PyEval_EvalCode (co=0x9bd7140, globals=0x82dd46c,
    locals=0x82dd46c) at Python/ceval.c:541
#81 0x080fe044 in run_mod (fp=0x9b3ddc0,
    filename=0x9b04e74 "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/jobOptions/AthenaCommon/Execution.py",
    start=257, globals=0x82dd46c, locals=0x82dd46c, closeit=1, flags=0x0)
    at Python/pythonrun.c:1339
#82 PyRun_FileExFlags (fp=0x9b3ddc0,
    filename=0x9b04e74 "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/jobOptions/AthenaCommon/Execution.py",
    start=257, globals=0x82dd46c, locals=0x82dd46c, closeit=1, flags=0x0)
    at Python/pythonrun.c:1325
#83 0x080d4900 in builtin_execfile (self=0x0, args=0x9bdaa2c)
    at Python/bltinmodule.c:794
#84 0x081391bd in PyCFunction_Call (func=0x82c964c, arg=0x9bdaa2c, kw=0x0)
    at Objects/methodobject.c:81
#85 0x080dbd09 in call_function (f=0x855a8cc, throwflag=0)
    at Python/ceval.c:3750
#86 PyEval_EvalFrameEx (f=0x855a8cc, throwflag=0) at Python/ceval.c:2412
#87 0x080ddc8c in PyEval_EvalCodeEx (co=0x849bcc8, globals=0x850335c,
    locals=0x0, args=0x9bdf218, argcount=2, kws=0x0, kwcount=0, defs=0x0,
    defcount=0, closure=0x0) at Python/ceval.c:3000
#88 0x08137caa in function_call (func=0x850264c, arg=0x9bdf20c, kw=0x0)
    at Objects/funcobject.c:524
#89 0x0805d88c in PyObject_Call (func=0x850264c, arg=0x9bdf20c, kw=0x0)
    at Objects/abstract.c:2492
#90 0x08064935 in instancemethod_call (func=0x850264c, arg=0x9bdf20c, kw=0x0)
    at Objects/classobject.c:2579
#91 0x0805d88c in PyObject_Call (func=0x9bdaa54, arg=0x84b44ec, kw=0x0)
    at Objects/abstract.c:2492
#92 0x080b29e3 in slot_tp_call (self=0x84cfeac, args=0x84b44ec, kwds=0x0)
    at Objects/typeobject.c:5373
#93 0x0805d88c in PyObject_Call (func=0x84cfeac, arg=0x84b44ec, kw=0x0)
    at Objects/abstract.c:2492
#94 0x080d969d in do_call (f=0x83ee1cc, throwflag=0) at Python/ceval.c:3968
#95 call_function (f=0x83ee1cc, throwflag=0) at Python/ceval.c:3773
#96 PyEval_EvalFrameEx (f=0x83ee1cc, throwflag=0) at Python/ceval.c:2412
#97 0x080ddc8c in PyEval_EvalCodeEx (co=0x83637b8, globals=0x82dd46c,
    locals=0x82dd46c, args=0x0, argcount=0, kws=0x0, kwcount=0, defs=0x0,
    defcount=0, closure=0x0) at Python/ceval.c:3000
#98 0x080dddd3 in PyEval_EvalCode (co=0x83637b8, globals=0x82dd46c,
    locals=0x82dd46c) at Python/ceval.c:541
#99 0x080fe044 in run_mod (fp=0x82ef9a0,
    filename=0xfffba7ae "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/share/bin/athena.py", start=257,
    globals=0x82dd46c, locals=0x82dd46c, closeit=1, flags=0xfffb9688)
    at Python/pythonrun.c:1339
#100 PyRun_FileExFlags (fp=0x82ef9a0,
    filename=0xfffba7ae "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/share/bin/athena.py", start=257,
    globals=0x82dd46c, locals=0x82dd46c, closeit=1, flags=0xfffb9688)
    at Python/pythonrun.c:1325
#101 0x080fe3a4 in PyRun_SimpleFileExFlags (fp=0x82ef9a0,
    filename=0xfffba7ae "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/share/bin/athena.py", closeit=1,
    flags=0xfffb9688) at Python/pythonrun.c:935
#102 0x080fe69a in PyRun_AnyFileExFlags (fp=0x82ef9a0,
    filename=0xfffba7ae "/cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/share/bin/athena.py", closeit=1,
    flags=0xfffb9688) at Python/pythonrun.c:739
#103 0x08058d46 in Py_Main (argc=2, argv=0xfffb9754) at Modules/main.c:572
#104 0x08057e42 in main (argc=Cannot access memory at address 0x800
===========================================================


The lines below might hint at the cause of the crash.
If they do not help you then please submit a bug report at
http://root.cern.ch/bugs. Please post the ENTIRE stack trace
from above as an attachment in addition to anything else
that might help us fixing this issue.
===========================================================
#12 SLL_Pop (size=2048) at src/tcmalloc.cc:390
#13 TCMalloc_ThreadCache_FreeList::Pop (size=2048) at src/tcmalloc.cc:1432
#14 TCMalloc_ThreadCache::Allocate (size=2048) at src/tcmalloc.cc:2006
#15 do_malloc (size=2048) at src/tcmalloc.cc:2781
#16 malloc (size=2048) at src/tcmalloc.cc:3002
#17 0x5e5ff5c0 in XrdClientVector<XrdClientMStream::ReadChunk>::Init (
    this=0xe92e000, offset=0, len=1024, updatecounters=false)
    at ../XrdClient/XrdClientVector.hh:64
#18 XrdClientVector (this=0xe92e000, offset=0, len=1024, updatecounters=false)
    at ../XrdClient/XrdClientVector.hh:139
#19 XrdClient::Read_Async (this=0xe92e000, offset=0, len=1024,
    updatecounters=false) at XrdClient.cc:1684
#20 0x5e601e68 in XrdClient::Read (this=0xe92e000, buf=0xf121400, offset=238,
    len=450) at XrdClient.cc:555
#21 0x5e5bd6d4 in TXNetFile::ReadBuffer(char*, int) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libNetx.so
#22 0x566f100e in TKey::ReadFile() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libRIO.so
#23 0x566edd66 in TKey::ReadObj() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libRIO.so
#24 0x566cce19 in TDirectoryFile::Get(char const*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libRIO.so
#25 0x5d3177bc in Trk::MatrixTool::accumulateFromTFiles() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkAlignGenToolsLib.so
#26 0x5d318945 in Trk::MatrixTool::accumulateFromFiles() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkAlignGenToolsLib.so
#27 0x5e074637 in Trk::GlobalChi2AlignTool::accumulateFromFiles() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkGlobalChi2AlignTools.so
#28 0x5cd727cc in Trk::AlignAlg::start() ()
   from /scratch/Panda_Pilot_9646_1305423930/PandaJob_1236266717_1305423932/workDir/InstallArea/i686-slc5-gcc43-opt/lib/libTrkAlignGenAlgs.so
#29 0x583d1bf0 in Algorithm::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#30 0x5cd26e2a in AthSequencer::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSequencer.so
#31 0x583d1bf0 in Algorithm::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#32 0x5cd26e2a in AthSequencer::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/AtlasCore/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSequencer.so
#33 0x583d1bf0 in Algorithm::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#34 0x583dba77 in MinimalEventLoopMgr::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#35 0x5836c208 in Service::sysStart() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernel.so
#36 0x595fc432 in ServiceManager::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSvc.so
#37 0x595d76e4 in ApplicationMgr::start() ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiSvc.so
#38 0x58cc826d in (anonymous namespace)::method_7165(void*, void*, std::vector<void*, std::allocator<void*> > const&, void*) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/GAUDI/v21r9p3a/InstallArea/i686-slc5-gcc43-opt/lib/libGaudiKernelDict.so
#39 0x5789c437 in ROOT::Cintex::Method_stub_with_context(ROOT::Cintex::StubContext_t*, G__value*, char const*, G__param*, int) ()
   from /cluster/grid/app/atlas_app/atlas_rel/prod/releases/rel_16-4.7/DetCommon/16.6.4/InstallArea/i686-slc5-gcc43-opt/lib/libCintex.so
#40 0x593d0034 in ?? ()
===========================================================


-------------------------------------------------------------------------------------
Core dump from CoreDumpSvc on compute-6-25.local at Sat May 14 21:17:30 2011

Caught signal 2097152(Unknown signal 2097152). Details:
  errno = -307372, code = 6 (*unknown reason*)
  pid = -307784, uid = 1432521112
  value = (6, 0x6)
  vmem = 298.488 MB
  rss = 214.637 MB
  total-ram = 8052.97 MB
  free-ram = 34.1602 MB
  buffer-ram= 16.1016 MB
  total-swap= 10236.7 MB
  free-swap = 10203.2 MB

Event counter: 0
Reason: Timeout (1800000 msec) reached
-------------------------------------------------------------------------------------


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