Hi Omar,
The file is attached. Also, my version of Cmake is 2.8.7, just to clear
that up.
Andrew
> Hello Andrew and Yuri,
>
> In order to run the the LCIO to ROOT converter you are going to need to
> compile the LCIO ROOT dictionaries i.e. BUILD_ROOTDICT=1. However, this at
> least gives us a hint as to what may be the problem.
>
> Can you try running
>
> cmake -D BUILD_ROOTDICT=1 -D ROOT_DIR=<your ROOT directory> ..
>
>
> again, and then send me the file "CMakeCache.txt" located in the
> directory lcio/trunk/build/ ?
>
>
>
> --Omar Moreno
>
>
>
> On Tue, Apr 2, 2013 at 8:29 AM, <[log in to unmask]> wrote:
>
>> Hello all,
>>
>> I got LCIO to build successfully! The problem was with the ROOT
>> dictionaries, and the line of code Omar suggested did the trick.
>>
>> Thanks everyone for your help,
>>
>> Andrew
>>
>> > Not yet, Andrew has classes to deal with first ;)
>> > So far the suggestions were:
>> > - verify cmake version (I think it's a very recent one because Andrew
>> said
>> > he had to install it for this)
>> > - check the build without dictionaries
>> >
>> > we;ll get back to you.
>> > Thanks,
>> > -y
>> >
>> > On Apr 2, 2013, at 10:55 AM, Graf, Norman A. wrote:
>> >
>> >> Hello Yuri,
>> >> Did you verify that your LCIO build was successful without specifying
>> >> the
>> >> root dictionary be built?
>> >> Norman
>> >>
>> >> ________________________________
>> >> From: [log in to unmask] [[log in to unmask]]
>> On
>> >> Behalf Of Yuri Gershtein [[log in to unmask]]
>> >> Sent: Tuesday, April 02, 2013 7:32 AM
>> >> To: Omar Moreno
>> >> Cc: McCormick, Jeremy I.; hps-software; [log in to unmask]
>> >> Subject: Re: DSTs and work on slcio files using C++
>> >>
>> >> Hi Omar,
>> >>
>> >> great, so RH and MacOS work.
>> >> Question is what to do if you have an Ubuntu.
>> >> We'll try compiling without dictionaries and see what happens.
>> >> But then again it would be unusable for our purposes, no?
>> >>
>> >> -y
>> >>
>> >> On Apr 2, 2013, at 3:46 AM, Omar Moreno wrote:
>> >>
>> >> I went ahead and built LCIO using the instructions found on the
>> >> confluence and I didn't have an issue. I used ROOT version 5.34,
>> cmake
>> >> version 2.8.6 on OpenSuse 12.1. Building LCIO requires a cmake
>> version
>> >> greater than 2.6 so make sure that you have that installed.
>> >>
>> >> It looks like the problem is occurring when it's trying to generate
>> the
>> >> LCIO ROOT dictionaries (I think). If you issue the following cmake
>> >> command
>> >>
>> >>
>> >> cmake -D BUILD_ROOTDICT=0 -D ROOT_DIR=$ROOTSYS ..
>> >>
>> >>
>> >> and then issue the make command, does LCIO build successfully?
>> >>
>> >>
>> >> --Omar Moreno
>> >>
>> >>
>> >> On Mon, Apr 1, 2013 at 4:36 PM, Yuri Gershtein
>> >> <[log in to unmask]<mailto:[log in to unmask]>>
>> >> wrote:
>> >> Hi,
>> >>
>> >> yes, e-mail list was cc-ed…
>> >> Adding Andrew to the thread again.
>> >>
>> >> He should verify, but I think it's a modern root release (5.34), and
>> >> ROOTSYS and LD_LIBRARY_PATH are set.
>> >> Now with LCIO I am not sure - your instructions say to svn from the
>> >> trunk.
>> >> I'm not even positive that what I have on my Mac is the same version.
>> >>
>> >> -y
>> >>
>> >>
>> >> On Apr 1, 2013, at 7:31 PM, Omar Moreno wrote:
>> >>
>> >>
>> >> I think the email was initially sent to the mailing list.
>> >>
>> >> It looks like the errors occurs when compiling LCIO. What version of
>> >> LCIO are you trying to compile? Also, what version of ROOT are you
>> >> running? Finally, have you set ROOTSYS and added the root libraries
>> to
>> >> your path?
>> >>
>> >> --Omar Moreno
>> >>
>> >> On Apr 1, 2013 4:04 PM, "McCormick, Jeremy I."
>> >> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>> >>
>> >>
>> >> Begin forwarded message:
>> >>
>> >> From: "McCormick, Jeremy I."
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>
>> >> Subject: Re: DSTs and work on slcio files using C++
>> >> Date: April 1, 2013 4:00:02 PM PDT
>> >> To: Yuri Gershtein
>> >> <[log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>>
>> >> Cc: Omar Moreno
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> "Nelson, Timothy Knight"
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> "Neal, Homer A."
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> "Jaros, John A."
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> "Graham, Mathew Thomas"
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> "Graf, Norman A."
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> "Moreno, Omar"
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> Maurik Holtrop
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>,
>> >> hps-software
>> >> <[log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>>,
>> >> "[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>"
>> >> <[log in to unmask]<mailto:[log in to unmask]><mailto:
>> [log in to unmask]<mailto:[log in to unmask]>>>
>> >>
>> >> Hi, please use the hps-software mailing list as it gets archived and
>> >> most of these people are on it.
>> >>
>> >> Looks like a simple namespace issue. Is there a missing declaration
>> >> like...
>> >>
>> >> using namespace lcio;
>> >>
>> >> Or if not that is it simply failing to find the lcio build? Did the
>> >> lcio build complete without errors?
>> >>
>> >> On Apr 1, 2013, at 3:44 PM, "Yuri Gershtein"
>> >> <[log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>>
>> >> wrote:
>> >>
>> >>
>> >> Hi Omar,
>> >>
>> >> as I mentioned, I followed these instructions and they worked
>> perfectly
>> >> for me on my Mac.
>> >>
>> >> Now my new student Andrew (Andrew meet the software experts, software
>> >> experts meet Andrew)
>> >> Running Ubuntu 12.04 LTS 64 bit, the instructions break.
>> >> I.e. when he does make install he gets an error with the following
>> >> disgnostics:
>> >>
>> >> 56%] Building CXX object
>> >> lcio/CMakeFiles/lcioDict.dir/__/rootdict/UTIL.cxx.o
>> >> In file included from
>> >> /home/chill/Research/lcio/trunk/build/rootdict/UTIL.h:39:0,
>> >> from
>> >> /home/chill/Research/lcio/trunk/build/rootdict/UTIL.cxx:17:
>> >> /home/chill/Research/lcio/trunk/src/cpp/include/UTIL/LCIterator.h: In
>> >> constructor ‘UTIL::LCIterator<T>::LCIterator(EVENT::LCEvent*, const
>> >> string&)’:
>> >> /home/chill/Research/lcio/trunk/src/cpp/include/UTIL/LCIterator.h:69:10:
>> >> error: ‘lcio’ has not been declared
>> >> /home/chill/Research/lcio/trunk/src/cpp/include/UTIL/LCIterator.h: In
>> >> constructor ‘UTIL::LCIterator<T>::LCIterator(EVENT::LCCollection*)’:
>> >> /home/chill/Research/lcio/trunk/src/cpp/include/UTIL/LCIterator.h:89:10:
>> >> error: ‘lcio’ has not been declared
>> >> make[2]: *** [lcio/CMakeFiles/lcioDict.dir/__/rootdict/UTIL.cxx.o]
>> Error
>> >> 1
>> >> make[1]: *** [lcio/CMakeFiles/lcioDict.dir/all] Error 2
>> >> make: *** [all] Error 2
>> >>
>> >>
>> >> We just went together through the instructions from scratch, and the
>> >> error persists.
>> >> Did you see anything like that before?
>> >>
>> >> Since we are uploading things from the trunk, is it possible that the
>> >> version he just downloaded is a
>> >> different one?
>> >>
>> >> Thanks!
>> >> -y
>> >>
>> >>
>> >> On Mar 7, 2013, at 10:20 PM, Omar Moreno wrote:
>> >>
>> >>
>> >> Hello Yuri,
>> >>
>> >> On Thu, Mar 7, 2013 at 6:54 PM, Yuri Gershtein
>> >> <[log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>>
>> >> wrote:
>> >> Hi Tim,
>> >>
>> >>
>> >> Sorry... I didn't mean to ding you for not googling first,
>> >>
>> >> ;) no harm done.
>> >>
>> >>
>> >> I think all of your questions are good ones that we don't have
>> answers
>> >> to yet, and are the types of things we are grappling with in these
>> >> discussions.
>> >>
>> >> I guess I propose we figure out the boundary conditions resource-wise
>> >> that we're dealing with first,
>> >> and then figure out what kind of event content we can afford.
>> >>
>> >> The question of ROOT vs LCIO here is probably separate. ROOT is
>> pretty
>> >> good at packing the data,
>> >> but then again I guess LCIO is as well, so size-wize this should not
>> >> matter, correct?
>> >> And if I can write a C++ program that reads in a file and writes out
>> a
>> >> root tree, this is just my analysis job.
>> >> I.e. even in CMS, where all data, even RAW, are root files, I make
>> >> another root tree for my own analyses purposes,
>> >> and I actually see advantages in having LCIO microDSTs. An Ntuplizer
>> >> that has TClonesArrays of
>> >> some simple classes is pretty straightforward to write once we know
>> the
>> >> content, so I do not see how
>> >> this is worth an argument at this point...
>> >>
>> >> How do I get Omar's code? I'd like to see if we can start using C++
>> to
>> >> read in lcio files that we generate here at Rutgers.
>> >>
>> >> If you simple want to read LCIO files using the C++ API, I would
>> start
>> >> here:
>> >>
>> https://confluence.slac.stanford.edu/display/hpsg/Loading+LCIO+Files+into+ROOT
>> >>
>> >> Here you will find all the instructions needed to install the LCIO
>> >> library and will find a couple of examples.
>> >>
>> >> If you want access to my code it is in a github. You can clone the
>> repo
>> >> using the following command:
>> >>
>> >>
>> >>
>> >>
>> >> git clone https://github.com/omar-moreno/hps_dst/
>> >>
>> >>
>> >>
>> >>
>> >> The repo will contain the converter and the API used to access the
>> event
>> >> information. In order to build the binaries, simply use the Make
>> >> command. Note that you need to make sure that the environmental
>> >> variables described in the first link have been set correctly in
>> order
>> >> for the make command to work.
>> >>
>> >>
>> >> Once the binaries are made you can get usage information as follows:
>> >>
>> >>
>> >> ./bin/write_hps_event -h
>> >>
>> >>
>> >> If you look at the converter code, it should give you an idea of how
>> to
>> >> loop over an LCIO event, access collections and so on. Also, if you
>> run
>> >> the following command
>> >>
>> >>
>> >> ./bin/write_hps_event -i <lcio file> -d
>> >>
>> >>
>> >> If will dump a printout of the collections available in the lcio
>> file.
>> >> Something like this
>> >>
>> >>
>> >>
>> ---------------------------------------------------------------------------
>> >> COLLECTION NAME COLLECTION TYPE NUMBER OF
>> >> ELEMENTS
>> >>
>> ===========================================================================
>> >> ConfirmedMCParticles MCParticle 0
>> >> EcalCalHits CalorimeterHit 2
>> >> EcalClusters Cluster 1
>> >> EcalReadoutHits RawCalorimeterHit 12
>> >> FPGAData LCGenericObject 7
>> >> HelicalTrackHitRelations LCRelation 0
>> >> HelicalTrackHits TrackerHit 0
>> >> HelicalTrackMCRelations LCRelation 0
>> >> MatchedTracks Track 0
>> >> RotatedHelicalTrackHitRelationsLCRelation 0
>> >> RotatedHelicalTrackHits TrackerHit 0
>> >> RotatedHelicalTrackMCRelationsLCRelation 0
>> >> SVTFittedRawTrackerHits LCRelation 43
>> >> SVTRawTrackerHits TrackerRawData 43
>> >> SVTShapeFitParameters LCGenericObject 43
>> >> SeededMCParticles MCParticle 0
>> >> StripClusterer_SiTrackerHitStrip1DTrackerHit 0
>> >> TriggerBank LCGenericObject 1
>> >>
>> ---------------------------------------------------------------------------
>> >>
>> >>
>> >>
>> >> This will give you the collection names you can access using the LCIO
>> >> C++ API.
>> >>
>> >>
>> >> I must note that there are a lot of changes that I haven't pushed
>> yet.
>> >> I hoping to do that sometime this weekend once I have sometime I am
>> >> happy with.
>> >>
>> >>
>> >> Let me know if you have any questions or issues running it.
>> >>
>> >>
>> >> --Omar Moreno
>> >>
>> >>
>> >>
>> >>
>> >>
>> >> -y
>> >>
>> >>
>> >> Tim
>> >>
>> >> On Mar 7, 2013, at 5:23 PM, Yuri Gershtein
>> >> <[log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>>
>> >> wrote:
>> >>
>> >> Hi Tim,
>> >>
>> >> thanks, and apologies for not googling things before asking.
>> >>
>> >> Yes, certainly, it is practical. LCIO was long ago settled on as the
>> >> EDM for HPS and the LCIO output will be the raw output format of the
>> >> experiment. Like any persistency framework, we can decide exactly
>> what
>> >> parts of the events we can afford to output to tape. That content
>> has
>> >> not yet been settled. There are some things that for whatever reason
>> >> haven't been persisted as LCIO objects in the past (but should be)
>> and
>> >> there are other things we have been writing to the events that won't
>> be
>> >> feasible to keep when we have large volumes of data.
>> >>
>> >> Should we have this discussion with some concrete numbers for what
>> the
>> >> event sizes are going to be then and what computing / storage
>> resources
>> >> are going to be available at which sites?
>> >>
>> >> One could make an LCIO micro-DST also, but it seems the desire is to
>> >> convert to ROOT at the point of slimming the data for analysis.
>> >>
>> >> Oh, I'm all for it, but there is also value in being able to run the
>> >> same or similar code on DST or micro-DST…
>> >> It's also would be great to define what is meant by "analysis" here -
>> >> is alignment analysis? ECAL calibration? Development of electron ID?
>> >> Do you foresee that it is all done in DST, or you have a separate
>> >> calibration stream?
>> >>
>> >> Again, sorry, I'm just trying to come up to speed with the computing
>> >> model,
>> >> may be I can google those kind of questions as well…
>> >>
>> >> thanks,
>> >> -y
>> >>
>> >> --------------------------
>> >> Prof. Yuri Gershtein
>> >> [log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>
>> >> http://physics.rutgers.edu/~gershtein
>> >> (732)445-5500
>> >> x1794<tel:%28732%29445-5500%20x1794><tel:%28732%29445-5500%20x1794>
>> >> W316 Serin Building
>> >> Department of Physics and Astronomy
>> >> 136 Frelinghuysen Rd
>> >> Rutgers University
>> >> Piscataway, NJ 08854
>> >>
>> >>
>> >>
>> >>
>> >> --------------------------
>> >> Prof. Yuri Gershtein
>> >> [log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>
>> >> http://physics.rutgers.edu/~gershtein
>> >> (732)445-5500
>> >> x1794<tel:%28732%29445-5500%20x1794><tel:%28732%29445-5500%20x1794>
>> >> W316 Serin Building
>> >> Department of Physics and Astronomy
>> >> 136 Frelinghuysen Rd
>> >> Rutgers University
>> >> Piscataway, NJ 08854
>> >>
>> >>
>> >>
>> >> --------------------------
>> >> Prof. Yuri Gershtein
>> >> [log in to unmask]<mailto:[log in to unmask]
>> ><mailto:[log in to unmask]<mailto:
>> [log in to unmask]>>
>> >> http://physics.rutgers.edu/~gershtein
>> >> (732)445-5500 x1794<tel:%28732%29445-5500%20x1794>
>> >> W316 Serin Building
>> >> Department of Physics and Astronomy
>> >> 136 Frelinghuysen Rd
>> >> Rutgers University
>> >> Piscataway, NJ 08854
>> >>
>> >>
>> >>
>> >> ########################################################################
>> >> Use REPLY-ALL to reply to list
>> >>
>> >> To unsubscribe from the HPS-SOFTWARE list, click the following link:
>> >> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=HPS-SOFTWARE&A=1
>> >>
>> >> ________________________________
>> >>
>> >> Use REPLY-ALL to reply to list
>> >>
>> >> To unsubscribe from the HPS-SOFTWARE list, click the following link:
>> >> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=HPS-SOFTWARE&A=1
>> >>
>> >> --------------------------
>> >> Prof. Yuri Gershtein
>> >> [log in to unmask]<mailto:[log in to unmask]>
>> >> http://physics.rutgers.edu/~gershtein
>> >> (732)445-5500 x1794<tel:%28732%29445-5500%20x1794>
>> >> W316 Serin Building
>> >> Department of Physics and Astronomy
>> >> 136 Frelinghuysen Rd
>> >> Rutgers University
>> >> Piscataway, NJ 08854
>> >>
>> >>
>> >>
>> >> --------------------------
>> >> Prof. Yuri Gershtein
>> >> [log in to unmask]<mailto:[log in to unmask]>
>> >> http://physics.rutgers.edu/~gershtein
>> >> (732)445-5500 x1794
>> >> W316 Serin Building
>> >> Department of Physics and Astronomy
>> >> 136 Frelinghuysen Rd
>> >> Rutgers University
>> >> Piscataway, NJ 08854
>> >>
>> >>
>> >> ________________________________
>> >>
>> >> Use REPLY-ALL to reply to list
>> >>
>> >> To unsubscribe from the HPS-SOFTWARE list, click the following link:
>> >> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=HPS-SOFTWARE&A=1
>> >>
>> >> ########################################################################
>> >> Use REPLY-ALL to reply to list
>> >>
>> >> To unsubscribe from the HPS-SOFTWARE list, click the following link:
>> >> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=HPS-SOFTWARE&A=1
>> >> <winmail.dat>
>> >
>> > --------------------------
>> > Prof. Yuri Gershtein
>> > [log in to unmask]
>> > http://physics.rutgers.edu/~gershtein
>> > (732)445-5500 x1794
>> > W316 Serin Building
>> > Department of Physics and Astronomy
>> > 136 Frelinghuysen Rd
>> > Rutgers University
>> > Piscataway, NJ 08854
>> >
>> >
>>
>>
>
########################################################################
Use REPLY-ALL to reply to list
To unsubscribe from the HPS-SOFTWARE list, click the following link:
https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=HPS-SOFTWARE&A=1
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//Dependencies for the target
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########################
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########################################################################
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