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HPS-SOFTWARE  November 2013

HPS-SOFTWARE November 2013

Subject:

Re: Running SLIC Locally

From:

"Graf, Norman A." <[log in to unmask]>

Reply-To:

Software for the Heavy Photon Search Experiment <[log in to unmask]>

Date:

Wed, 6 Nov 2013 20:09:20 -0800

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (156 lines)

Hello Sho,
 Thanks for looking into this. Feel free to update the
confluence page.
Norman

________________________________________
From: Sho Uemura [[log in to unmask]]
Sent: Wednesday, November 06, 2013 6:46 PM
To: McCormick, Jeremy I.
Cc: Kyle McCarty; Graf, Norman A.; hps-software
Subject: Re: Running SLIC Locally

The Confluence instructions seem to be out of date: ilcinstall pulls in
and installs the LCDD schemas locally, so there's no need to download
those, but you do need to download the GDML schemas (I imagine it would
make sense for ilcinstall to do this as well, but it doesn't seem to).

So download all the .xsd files under
http://www.lcsim.org/schemas/gdml/1.0/ into a local directory, then set
GDML_SCHEMA_DIR to point to this directory. This is all I need to do to
get slic running behind the JLab firewall.

On Tue, 5 Nov 2013, McCormick, Jeremy I. wrote:

> Alright I will double check that it is still working in my local copy...
>
> On Nov 5, 2013, at 11:16 AM, "Kyle McCarty" <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Hello Jeremy,
>
> Running the command " find /net/data/taro/kylem/schema/ -name "*.xsd" " gives
>
> /net/data/taro/kylem/schema/lcdd_iddict.xsd
> /net/data/taro/kylem/schema/lcdd_fields.xsd
> /net/data/taro/kylem/schema/lcdd_limits.xsd
> /net/data/taro/kylem/schema/lcdd_display.xsd
> /net/data/taro/kylem/schema/lcdd_sensitive_detectors.xsd
> /net/data/taro/kylem/schema/lcdd.xsd
> /net/data/taro/kylem/schema/lcdd_header.xsd
> /net/data/taro/kylem/schema/lcdd_regions.xsd
>
> I believe that batch system can access the folder. It writes the output log files (like the ones I sent previously) to the same driver (though a different folder), so it does seem to be able to read/write to said drive. Also, the schema folder has read/execute permissions for all user groups, so there shouldn't be any permission issues. The schema files themselves only had read access for all user groups. I gave execute access to all user groups for these as well, but this does not stop the errors. I'm fairly certain that the batch system is running the processes as me anyway, though, since it can write to an output folder which only I have write access for.
>
> - Kyle
>
>
> On Tue, Nov 5, 2013 at 1:31 PM, McCormick, Jeremy I. <[log in to unmask]<mailto:[log in to unmask]>> wrote:
> Hi, Kyle.
>
> Sorry you?re having troubles with this...
>
> Can you execute this command to show the contents of your schema dir?
>
> find /net/data/taro/kylem/schema/ -name ?*.xsd?
>
> Please paste that command output into an email back to us.
>
> Stupid question: Is that directory accessible to the batch system?
>
> Thanks.
>
> On Nov 5, 2013, at 8:50 AM, Kyle McCarty <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Hello Norman,
>
> The batch system we use is OpenPBS and works by submitting a shell script to the batch system, which then distributes the process to a node. I have attached a sample script that gets passed to the batch system as well as the stdout and stderr that came from running it. The variable GDML_SCHEMA_DIR correctly resolves as "/net/data/taro/kylem/schema/" which contains all of the XSD files.
>
> Thanks,
>
> Kyle
>
>
> On Mon, Nov 4, 2013 at 1:45 PM, Graf, Norman A. <[log in to unmask]<mailto:[log in to unmask]>> wrote:
> Hello Kyle,
> As far as I know this should work. Can you provide more information
> on exactly how you are running slic, where the schemas are located
> locally and whether GDML_SCHEMA_DIR resolves correctly?
> Norman
>
> From: Kyle McCarty [mailto:[log in to unmask]<mailto:[log in to unmask]>]
> Sent: Monday, November 04, 2013 9:10 AM
> To: Graf, Norman A.
> Cc: hps-software
> Subject: Re: Running SLIC Locally
>
> Hello Norman,
> I tried your suggestion and I am still getting a similar problem. It now gives the error:
>
> fatal error:  systemId:  line: 0 column: 0
> unable to connect socket for URL 'http://www.lcsim.org/schemas/gdml/1.0/gdml.xsd'
> fatal error:  systemId: file:///net/home/mccaky/data/schema//lcdd.xsd line: 18 column: 80
> fatal error during schema scan
>
> -------- EEEE ------- G4Exception-START -------- EEEE -------
> *** G4Exception :
>      issued by :
> Failed to get the world volume.
> *** Fatal Exception *** core dump ***
> -------- EEEE -------- G4Exception-END --------- EEEE -------
>
>
> *** G4Exception: Aborting execution ***
> The file "lcdd.xsd" does exist at the indicated directory, so it seems that SLIC is having trouble finding it there, for some reason.
> - Kyle
>
> On Mon, Nov 4, 2013 at 11:53 AM, Graf, Norman A. <[log in to unmask]<mailto:[log in to unmask]>> wrote:
> Good Morning Kyle,
> Have you tried the following?
>
> https://confluence.slac.stanford.edu/display/ilc/How+can+I+make+SLIC+look+for+XML+schemas+in+a+local+directory
>
> Norman
>
> From: [log in to unmask]<mailto:[log in to unmask]> [mailto:[log in to unmask]<mailto:[log in to unmask]>] On Behalf Of Kyle McCarty
> Sent: Monday, November 04, 2013 8:51 AM
> To: hps-software
> Subject: Running SLIC Locally
>
> Hello hps-software,
> I am attempting to run SLIC on a computing cluster, but am running into trouble. The individual nodes in the cluster do not have access to the internet, and this renders SLIC unable to access a file "http://www.lcsim.org/schemas/lcdd/1.0/lcdd.xsd" and subsequently terminate. Is there a means by which I can get SLIC to not require an internet connection to run?
> Thanks,
>
> Kyle
>
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