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QSERV-L  May 2014

QSERV-L May 2014

Subject:

Re: Qserv master stack install broken

From:

Jacek Becla <[log in to unmask]>

Reply-To:

General discussion for qserv (LSST prototype baseline catalog)

Date:

Thu, 8 May 2014 10:53:48 -0700

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (207 lines)

Fabrice

I tried your recipe and I got:


qserv -r http://lsst-web.ncsa.illinois.edu/~fjammes/qserv
   [  1/23 ]  doxygen 1.8.2+2 (already installed) 
  done.
   [  2/23 ]  expat master-g4a0254e0b2 
  done.
   [  3/23 ]  libevent master-g410bd5abbb 
  done.
   [  4/23 ]  lua master-g8b632a67b3 
  done.
   [  5/23 ]  mysql master-g5d79af2a50 
  done.
   [  6/23 ]  mysqlclient 5.1.65+3 
  done.
   [  7/23 ]  python master-gcbf93ab65b ...
              Using externally provided Python 2.7.5 :: Anaconda 1.8.0 
(32-bit).
   [  7/23 ]  python master-gcbf93ab65b 
  done.
   [  8/23 ]  xrootd master-gfc9bfb2059 ...

***** error: from 
/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/build.log:
sconsUtils            8.0.0.0    	sims b4 Winter2014 current b5 b6 b3 setup
+ ./ups/eupspkg VERBOSE=0 FLAVOR=Linux fetch
+ ./ups/eupspkg VERBOSE=0 FLAVOR=Linux prep
eupspkg.prep: unpacking upstream/xrootd-qs5.tar.gz ...
+ setup --type=build -k -r .
++ /home/becla/qserv/1/eups/bin/eups_setup --type=build -k -r .
+ eval export 
'MANPATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/share/man:/home/becla/qserv/1/Linux/lua/master-g8b632a67b3/man:/home/becla/qserv/1/Linux/expat/master-g4a0254e0b2/man:/home/becla/qserv/1/Linux/git/1.8.5.2/share/man;' 
export 'SETUP_XROOTD='\''xrootd' 
LOCAL:/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059 
-f Linux -Z '(none)'\'';' export 
'XROOTD_DIR=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059;' 
export 
'LD_LIBRARY_PATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/lib:/home/becla/qserv/1/Linux/libevent/master-g410bd5abbb/lib:/home/becla/qserv/1/Linux/mysql/master-g5d79af2a50/lib:/home/becla/qserv/1/Linux/mysqlclient/5.1.65+3/lib;' 
export 
PATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/bin:/home/becla/qserv/1/Linux/mysqlclient/5.1.65+3/bin:/home/becla/qserv/1/Linux/mysql/master-g5d79af2a50/bin:/home/becla/qserv/1/Linux/lua/master-g8b632a67b3/bin:/home/becla/qserv/1/Linux/expat/master-g4a0254e0b2/bin:/home/becla/qserv/1/Linux/doxygen/1.8.2+2/bin:/home/becla/qserv/1/Linux/lsst/8.0.0.2/bin:/home/becla/qserv/1/Linux/scons/2.1.0+7/bin:/home/becla/qserv/1/Linux/sconsUtils/8.0.0.0/bin:/home/becla/qserv/1/Linux/git/1.8.5.2/bin:/home/becla/qserv/1/Linux/anaconda/1.8.0/bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/becla/qserv/1/eups/bin
++ export 
MANPATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/share/man:/home/becla/qserv/1/Linux/lua/master-g8b632a67b3/man:/home/becla/qserv/1/Linux/expat/master-g4a0254e0b2/man:/home/becla/qserv/1/Linux/git/1.8.5.2/share/man
++ 
MANPATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/share/man:/home/becla/qserv/1/Linux/lua/master-g8b632a67b3/man:/home/becla/qserv/1/Linux/expat/master-g4a0254e0b2/man:/home/becla/qserv/1/Linux/git/1.8.5.2/share/man
++ export 'SETUP_XROOTD=xrootd 
LOCAL:/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059 
-f Linux -Z (none)'
++ SETUP_XROOTD='xrootd 
LOCAL:/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059 
-f Linux -Z (none)'
++ export 
XROOTD_DIR=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059
++ 
XROOTD_DIR=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059
++ export 
LD_LIBRARY_PATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/lib:/home/becla/qserv/1/Linux/libevent/master-g410bd5abbb/lib:/home/becla/qserv/1/Linux/mysql/master-g5d79af2a50/lib:/home/becla/qserv/1/Linux/mysqlclient/5.1.65+3/lib
++ 
LD_LIBRARY_PATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/lib:/home/becla/qserv/1/Linux/libevent/master-g410bd5abbb/lib:/home/becla/qserv/1/Linux/mysql/master-g5d79af2a50/lib:/home/becla/qserv/1/Linux/mysqlclient/5.1.65+3/lib
++ export 
PATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/bin:/home/becla/qserv/1/Linux/mysqlclient/5.1.65+3/bin:/home/becla/qserv/1/Linux/mysql/master-g5d79af2a50/bin:/home/becla/qserv/1/Linux/lua/master-g8b632a67b3/bin:/home/becla/qserv/1/Linux/expat/master-g4a0254e0b2/bin:/home/becla/qserv/1/Linux/doxygen/1.8.2+2/bin:/home/becla/qserv/1/Linux/lsst/8.0.0.2/bin:/home/becla/qserv/1/Linux/scons/2.1.0+7/bin:/home/becla/qserv/1/Linux/sconsUtils/8.0.0.0/bin:/home/becla/qserv/1/Linux/git/1.8.5.2/bin:/home/becla/qserv/1/Linux/anaconda/1.8.0/bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/becla/qserv/1/eups/bin
++ 
PATH=/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/bin:/home/becla/qserv/1/Linux/mysqlclient/5.1.65+3/bin:/home/becla/qserv/1/Linux/mysql/master-g5d79af2a50/bin:/home/becla/qserv/1/Linux/lua/master-g8b632a67b3/bin:/home/becla/qserv/1/Linux/expat/master-g4a0254e0b2/bin:/home/becla/qserv/1/Linux/doxygen/1.8.2+2/bin:/home/becla/qserv/1/Linux/lsst/8.0.0.2/bin:/home/becla/qserv/1/Linux/scons/2.1.0+7/bin:/home/becla/qserv/1/Linux/sconsUtils/8.0.0.0/bin:/home/becla/qserv/1/Linux/git/1.8.5.2/bin:/home/becla/qserv/1/Linux/anaconda/1.8.0/bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/becla/qserv/1/eups/bin
+ ./ups/eupspkg VERBOSE=0 FLAVOR=Linux config
/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/xrootd-master-gfc9bfb2059/ups/eupspkg.cfg.sh: 
line 14: cmake: command not found
+ exit -3
eups distrib: Failed to build xrootd-master-gfc9bfb2059.eupspkg: Command:
	source /home/becla/qserv/1/eups/bin/setups.sh; export 
EUPS_PATH=/home/becla/qserv/1; 
(/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/build.sh) 
 >> 
/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/build.log 
2>&1 
4>/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/build.msg 

exited with code 253


-----


becla@jb-E6230:~/qserv/1$ source /home/becla/qserv/1/eups/bin/setups.sh; 
export EUPS_PATH=/home/becla/qserv/1

becla@jb-E6230:~/qserv/1$ 
/home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059/build.sh
+ cd /home/becla/qserv/1/EupsBuildDir/Linux/xrootd-master-gfc9bfb2059
+ tar xzvf /tmp/eups/distrib/xrootd_7XFuSF
tar (child): /tmp/eups/distrib/xrootd_7XFuSF: Cannot open: No such file 
or directory
tar (child): Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error is not recoverable: exiting now
becla@jb-E6230:~/qserv/1$ ls -l /tmp/eups/distrib/
total 0







On 05/08/2014 04:47 AM, Fabrice Jammes wrote:
> Hi Serge,
>
> The install procedure is still in an active development process and this
> may imply this kind of problem, sorry fot that. Furthermore, i would
> need a ci tool (like jenkins) in order to get alerts on problems
> produced by a code update, but now i have to run install and tests by
> hand, for each branch and on both SL6 and Ubuntu, and it's not efficient
> at all.
>
> I've corrected the error on the distserver (i may have mixed by error
> DM-612 and master input parameters during a previous distribution
> operation). This seems to work now (but integration tests aren't
> supported, if it doesn't work, please asks Andy S. who knows how to
> retrieve the correct version of tests datasets, DM-365 should solve this).
>
> An alpha prototype for the new packaging procedure seems to work but I
> need to ask to Mario how to improve it (Indeed, it seems there's some
> non-blocking issues).
> You can try it if you want :
>
> ---
> wget http://sw.lsstcorp.org/eupspkg/newinstall.sh
> bash newinstall.sh
>
> source loadLSST.sh
>
> # i'm not sure next step is needed.
> eups distrib install boost
> setup boost
>
> eups distrib install qserv -r
> http://lsst-web.ncsa.illinois.edu/~fjammes/qserv
> ---
>
> Your remarks on it may also help.
>
> README-devel.txt has been updated w.r.t. Mario instructions, it also
> seems to work if you want to integrate your own Qserv version in your
> local eups stack.
>
> Have a nice day,
>
> Fabrice
>
> On 07/05/2014 21:48, Serge Monkewitz wrote:
>> Hi Fabrice,
>>
>>    Installing via
>> http://datasky.in2p3.fr/qserv/distserver-master/newinstall-qserv-6.0.0rc1-master.sh
>> currently fails with a message like the following:
>>
>> Detected Qserv-compatible sytem java version; will use it.
>>   [  1/4  ]  doxygen 1.8.2+2              done.
>>   [  2/4  ]  python system (already installed)              done.
>>   [  3/4  ]  scons 2.1.0+7              done.
>>   [  4/4  ]  sconsUtils 8.0.0.0             done.
>> Installing Qserv in /u2/smm/stack
>> eups distrib: Trouble reading manifest for qserv 6.0.0rc1-DM-612
>> (generic): First line of manifest file /tmp/eups/distrib/qserv_frPkBX
>> is corrupted:
>> <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
>>
>> My guess is that the DOCTYPE line is from an HTTP 404 that one gets
>> when newinstall-qserv-6.0.0rc1-master.sh tries to install qserv
>> 6.0.0rc1-DM-612 (instead of 6.0.0rc1-master) and cannot find the
>> manifest. I think the fix is to change
>> http://datasky.in2p3.fr/qserv/distserver-master/tags/current.list to
>> reference qserv 6.0.0rc1-master instead of 6.0.0rc1-DM-612. Can you do
>> that when you get a chance?
>>
>> Also - is it true that we should still use the IN2P3 distribution
>> server, or should we switch to the one you and Mario setup on
>> lsst-dev? Note the README still references the IN2P3 server.
>>
>> Thanks!
>> Serge
>>
>>
>> ------------------------------------------------------------------------
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>
>
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