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HPS-SVN  November 2014

HPS-SVN November 2014

Subject:

r1424 - in /java/trunk: ./ analysis/src/main/java/org/hps/analysis/dataquality/ analysis/src/main/java/org/hps/analysis/examples/ conditions/src/main/java/org/hps/conditions/ conditions/src/main/java/org/hps/conditions/config/ conditions/src/main/java/org/hps/conditions/deprecated/ conditions/src/main/java/org/hps/conditions/ecal/ conditions/src/main/java/org/hps/conditions/svt/ conditions/src/main/resources/org/hps/conditions/config/ conditions/src/test/java/org/hps/conditions/ conditions/src/test/java/org/hps/conditions/ecal/ conditions/src/test/java/org/hps/conditions/svt/ detector-data/detectors/HPS-TestRun-v1/ detector-data/detectors/HPS-TestRun-v2/ detector-data/detectors/HPS-TestRun-v3-split/ detector-data/detectors/HPS-TestRun-v3/ detector-data/detectors/HPS-TestRun-v4/ detector-data/detectors/HPS-TestRun-v5/ detector-data/detectors/HPS-TestRun-v6/ detector-data/detectors/HPS-TestRun-v7-2/ detector-data/detectors/HPS-TestRun-v7-3/ detector-data/detectors/HPS-TestRun-v7/ detector-data/detectors/HPS-TestRun-v8-4/ detector-data/detectors/HPS-TestRun-v8-5/ detector-data/detectors/HPS-TestRun-v8/ distribution/ ecal-event-display/ ecal-event-display/src/main/java/org/hps/monitoring/ecal/eventdisplay/ui/ ecal-readout-sim/ ecal-readout-sim/src/main/java/org/hps/readout/ecal/ ecal-recon/ ecal-recon/src/main/java/org/hps/recon/ecal/ evio/ evio/src/main/java/org/hps/evio/ integration-tests/ integration-tests/src/test/java/org/hps/ integration-tests/src/test/resources/org/hps/ecalreadoutsim/ integration-tests/src/test/resources/org/hps/steering/test/ monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/ recon/ recon/src/main/java/org/hps/recon/filtering/ record-util/ steering-files/src/main/resources/org/hps/steering/analysis/ steering-files/src/main/resources/org/hps/steering/readout/ steering-files/src/main/resources/org/hps/steering/recon/ steering-files/src/main/resources/org/hps/steering/users/holly/ tracking/ tracking/src/main/java/org/hps/readout/svt/ tracking/src/main/java/org/hps/recon/tracking/ tracking/src/main/java/org/hps/recon/tracking/apv25/ tracking/src/main/java/org/hps/recon/tracking/gbl/ tracking/src/main/java/org/hps/svt/alignment/ tracking/src/test/java/org/hps/recon/tracking/ users/src/main/java/org/hps/users/holly/ users/src/main/java/org/hps/users/meeg/ users/src/main/java/org/hps/users/mgraham/ users/src/main/java/org/hps/users/omoreno/ users/src/main/java/org/hps/users/phansson/

From:

[log in to unmask]

Reply-To:

Notification of commits to the hps svn repository <[log in to unmask]>

Date:

Mon, 3 Nov 2014 10:55:12 -0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (11455 lines)

Author: [log in to unmask]
Date: Mon Nov  3 02:54:53 2014
New Revision: 1424

Log:
Merge in all database conditions work into the trunk. I'm glad that's done\!

Added:
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtChannel.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtChannel.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtConditions.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtConditions.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtConditionsConverter.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtConditionsConverter.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtDaqMapping.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtDaqMapping.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtT0Shift.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/AbstractSvtT0Shift.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtChannel.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtChannel.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtConditions.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtConditions.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtConditionsConverter.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtConditionsConverter.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtDaqMapping.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtDaqMapping.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtDetectorSetup.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtDetectorSetup.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtT0Shift.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/main/java/org/hps/conditions/svt/TestRunSvtT0Shift.java
    java/trunk/conditions/src/test/java/org/hps/conditions/ecal/TestRunEcalConditionsConverterTest.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/test/java/org/hps/conditions/ecal/TestRunEcalConditionsConverterTest.java
    java/trunk/conditions/src/test/java/org/hps/conditions/svt/TestRunSvtConditionsConverterTest.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/test/java/org/hps/conditions/svt/TestRunSvtConditionsConverterTest.java
    java/trunk/conditions/src/test/java/org/hps/conditions/svt/TestRunSvtDaqMappingTest.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/test/java/org/hps/conditions/svt/TestRunSvtDaqMappingTest.java
    java/trunk/conditions/src/test/java/org/hps/conditions/svt/TestRunSvtDetectorSetupTest.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/conditions/src/test/java/org/hps/conditions/svt/TestRunSvtDetectorSetupTest.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/SvtSensorSetup.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/tracking/src/main/java/org/hps/recon/tracking/SvtSensorSetup.java
    java/trunk/tracking/src/test/java/org/hps/recon/tracking/SvtSensorSetupTest.java
      - copied unchanged from r1423, java/branches/hps_java_trunk_HPSJAVA-255/tracking/src/test/java/org/hps/recon/tracking/SvtSensorSetupTest.java
Modified:
    java/trunk/   (props changed)
    java/trunk/analysis/src/main/java/org/hps/analysis/dataquality/SvtMonitoring.java
    java/trunk/analysis/src/main/java/org/hps/analysis/examples/LCIOTrackAnalysis.java
    java/trunk/analysis/src/main/java/org/hps/analysis/examples/TrackAnalysis.java
    java/trunk/conditions/src/main/java/org/hps/conditions/AbstractConditionsDriver.java
    java/trunk/conditions/src/main/java/org/hps/conditions/ConditionsDriver.java
    java/trunk/conditions/src/main/java/org/hps/conditions/DatabaseConditionsManager.java
    java/trunk/conditions/src/main/java/org/hps/conditions/TestRunConditionsDriver.java
    java/trunk/conditions/src/main/java/org/hps/conditions/config/TestRunReadOnlyConfiguration.java
    java/trunk/conditions/src/main/java/org/hps/conditions/deprecated/CalibrationDriver.java
    java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsConverter.java
    java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsUtil.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtChannel.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditions.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsConverter.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConverterRegistry.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDaqMapping.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDetectorSetup.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtT0Shift.java
    java/trunk/conditions/src/main/resources/org/hps/conditions/config/conditions_database_testrun_2012.xml
    java/trunk/conditions/src/test/java/org/hps/conditions/ConditionsTestRunTest.java
    java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalConditionsConverterTest.java
    java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalGainCompareTest.java
    java/trunk/detector-data/detectors/HPS-TestRun-v1/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v2/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v3-split/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v3/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v4/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v5/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v6/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v7-2/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v7-3/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v7/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v8-4/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v8-5/compact.xml
    java/trunk/detector-data/detectors/HPS-TestRun-v8/compact.xml
    java/trunk/distribution/   (props changed)
    java/trunk/ecal-event-display/   (props changed)
    java/trunk/ecal-event-display/src/main/java/org/hps/monitoring/ecal/eventdisplay/ui/Viewer.java   (props changed)
    java/trunk/ecal-readout-sim/   (props changed)
    java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/FADCEcalReadoutDriver.java
    java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/MollerTriggerDriver.java
    java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/SimpleEcalReadoutDriver.java
    java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/TimeEvolutionEcalReadoutDriver.java
    java/trunk/ecal-recon/   (props changed)
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/CTPEcalClusterer.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/ECalUtils.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterICBasic.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterer.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalConverterDriver.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalEdepToTriggerConverterDriver.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverter.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverterDriver.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalReadoutToTriggerConverterDriver.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalTriggerFilterDriver.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/FADCConverterDriver.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/GTPEcalClusterer.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSCalorimeterHit.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSEcalCluster.java
    java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSRawCalorimeterHit.java
    java/trunk/evio/   (props changed)
    java/trunk/evio/src/main/java/org/hps/evio/ECalEvioReader.java
    java/trunk/evio/src/main/java/org/hps/evio/ECalHitWriter.java
    java/trunk/evio/src/main/java/org/hps/evio/LCSimTestRunEventBuilder.java
    java/trunk/evio/src/main/java/org/hps/evio/SVTEvioReader.java
    java/trunk/evio/src/main/java/org/hps/evio/SVTHitWriter.java
    java/trunk/evio/src/main/java/org/hps/evio/TestRunEvioToLcio.java
    java/trunk/evio/src/main/java/org/hps/evio/TestRunReconToEvio.java
    java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToEvio.java
    java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToLcio.java
    java/trunk/integration-tests/   (props changed)
    java/trunk/integration-tests/pom.xml
    java/trunk/integration-tests/src/test/java/org/hps/EcalReadoutSimTest.java
    java/trunk/integration-tests/src/test/java/org/hps/MCFilteredReconTest.java
    java/trunk/integration-tests/src/test/java/org/hps/SimpleSvtReadoutTest.java
    java/trunk/integration-tests/src/test/java/org/hps/TestRunEvioToLcioTest.java
    java/trunk/integration-tests/src/test/java/org/hps/TestRunReadoutToEvioTest.java
    java/trunk/integration-tests/src/test/java/org/hps/TestRunReconTest.java
    java/trunk/integration-tests/src/test/resources/org/hps/ecalreadoutsim/EcalReadoutSimTest.lcsim
    java/trunk/integration-tests/src/test/resources/org/hps/steering/test/MockDataReconTest.lcsim
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/PedestalPlots.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTEventInfo.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitPulsePlots.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitReconstructionPlots.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTMonitoringPlots.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTPulseFitPlots.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTSimpleEventDisplay.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackTimePlots.java
    java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackingReconstructionPlots.java
    java/trunk/recon/   (props changed)
    java/trunk/recon/src/main/java/org/hps/recon/filtering/InTimeHitsFilter.java
    java/trunk/recon/src/main/java/org/hps/recon/filtering/MinimumHitsFilter.java
    java/trunk/record-util/   (props changed)
    java/trunk/steering-files/src/main/resources/org/hps/steering/analysis/StarterAnalysis.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutNoPileup.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToEvio.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToLcio.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014TruthReadoutToLcio.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPSTrackingDefaults.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/LcioToEvio.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunNoPileup.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToEvio.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToLcio.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/GBLReco.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineNoPileupRecon.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineRecon.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineTruthRecon.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPSTrackingDefaultsRecon.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/SimpleMCRecon.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineRecon.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineReconTwoTrkFilter.lcsim
    java/trunk/steering-files/src/main/resources/org/hps/steering/users/holly/MockReconClusterICTest.lcsim
    java/trunk/tracking/   (props changed)
    java/trunk/tracking/src/main/java/org/hps/readout/svt/SimpleSvtReadout.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/DataTrackerHitDriver.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/DumbShaperFit.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/HelicalTrackHitDriver.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/MaterialSupervisor.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/NearestNeighborRMSClusterer.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/NoiselessReadoutChip.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/RawTrackerHitFitterDriver.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/SVTBadChannelFilterDriver.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperAnalyticFitAlgorithm.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperFitAlgorithm.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperLinearFitAlgorithm.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperPileupFitAlgorithm.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackUtils.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackerHitUtils.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/DataProcessingModule.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSDataProcessingModule.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSSiSensorReadout.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/RearTransitionModule.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtHalfModule.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtReadout.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/TestRunDataProcessingModule.java
    java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/GBLOutput.java
    java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java
    java/trunk/users/src/main/java/org/hps/users/holly/EcalClustererCosmics.java
    java/trunk/users/src/main/java/org/hps/users/meeg/LCIOTrackAnalysis.java
    java/trunk/users/src/main/java/org/hps/users/mgraham/HelicalTrackHitResidualsDriver.java
    java/trunk/users/src/main/java/org/hps/users/mgraham/SVTRawTrackerHitThresholdDriver.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/PlotUtils.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/SimpleSvtTrigger.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitCorrelations.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitEfficiency.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/SvtPerformance.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/SvtQA.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/SvtTrackRecoEfficiency.java
    java/trunk/users/src/main/java/org/hps/users/phansson/DataTrackerFakeHitDriver.java
    java/trunk/users/src/main/java/org/hps/users/phansson/ModuleMPAlignmentInput.java
    java/trunk/users/src/main/java/org/hps/users/phansson/ROOTFlatTupleDriver.java
    java/trunk/users/src/main/java/org/hps/users/phansson/StripMPAlignmentInput.java
    java/trunk/users/src/main/java/org/hps/users/phansson/TrackingGeometryChecker.java
    java/trunk/users/src/main/java/org/hps/users/phansson/TrackingReconstructionPlots.java

Modified: java/trunk/analysis/src/main/java/org/hps/analysis/dataquality/SvtMonitoring.java
 =============================================================================
--- java/trunk/analysis/src/main/java/org/hps/analysis/dataquality/SvtMonitoring.java	(original)
+++ java/trunk/analysis/src/main/java/org/hps/analysis/dataquality/SvtMonitoring.java	Mon Nov  3 02:54:53 2014
@@ -7,6 +7,7 @@
 import hep.aida.IHistogram1D;
 import hep.aida.IPlotter;
 import hep.aida.IPlotterStyle;
+
 import java.io.IOException;
 import java.sql.SQLException;
 import java.util.HashMap;
@@ -14,9 +15,9 @@
 import java.util.Map;
 import java.util.logging.Level;
 import java.util.logging.Logger;
-import org.hps.conditions.deprecated.SvtUtils;
+
 import org.hps.recon.tracking.ShapeFitParameters;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.GenericObject;
 import org.lcsim.event.LCRelation;
@@ -40,7 +41,7 @@
     private Detector detector = null;
     private IPlotter plotter;
     private final String trackerName = "Tracker";
-    private List<SiSensor> sensors;
+    private List<HpsSiSensor> sensors;
     private Map<String, int[]> occupancyMap;
     private Map<String, Double> avgOccupancyMap;
     private Map<String, String> avgOccupancyNames;
@@ -74,14 +75,14 @@
         aida.tree().cd("/");
 
         // Make a list of SiSensors in the SVT.
-        sensors = this.detector.getSubdetector(trackerName).getDetectorElement().findDescendants(SiSensor.class);
+        sensors = this.detector.getSubdetector(trackerName).getDetectorElement().findDescendants(HpsSiSensor.class);
 
         // Reset the data structure that keeps track of strip occupancies.
         resetOccupancyMap();
 
         // Setup the occupancy plots.
         aida.tree().cd("/");
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
             //IHistogram1D occupancyPlot = aida.histogram1D(sensor.getName().replaceAll("Tracker_TestRunModule_", ""), 640, 0, 639);
             IHistogram1D occupancyPlot = createSensorPlot(plotDir + "occupancy_", sensor, maxChannels, 0, maxChannels - 1);
             IHistogram1D t0Plot = createSensorPlot(plotDir + "t0Hit_", sensor, 50, -50., 50.);
@@ -114,7 +115,7 @@
             for (LCRelation hit : fittedTrackerHits) {
                 RawTrackerHit rth = (RawTrackerHit) hit.getFrom();
                 GenericObject pars = (GenericObject) hit.getTo();
-                String sensorName = getNiceSensorName((SiSensor) rth.getDetectorElement());
+                String sensorName = getNiceSensorName((HpsSiSensor) rth.getDetectorElement());
                 //this is a clever way to get the parameters we want from the generic object
                 double t0 = ShapeFitParameters.getT0(pars);
                 double amp = ShapeFitParameters.getAmp(pars);
@@ -130,7 +131,7 @@
 //            System.out.println("Found a Si cluster collection");
             List<TrackerHit> siClusters = (List<TrackerHit>) event.get(trackerHitCollectionName);
             for (TrackerHit cluster : siClusters) {
-                String sensorName = getNiceSensorName((SiSensor) ((RawTrackerHit) cluster.getRawHits().get(0)).getDetectorElement());
+                String sensorName = getNiceSensorName((HpsSiSensor) ((RawTrackerHit) cluster.getRawHits().get(0)).getDetectorElement());
                 double t0 = cluster.getTime();
                 double dedx = cluster.getdEdx() * 1e6;
 //                System.out.println("dedx = "+dedx);
@@ -140,7 +141,7 @@
         }
     }
 
-    private IHistogram1D getSensorPlot(String prefix, SiSensor sensor) {
+    private IHistogram1D getSensorPlot(String prefix, HpsSiSensor sensor) {
         String hname = prefix + getNiceSensorName(sensor);
         return aida.histogram1D(hname);
     }
@@ -149,7 +150,7 @@
         return aida.histogram1D(prefix + sensorName);
     }
 
-    private IHistogram1D createSensorPlot(String prefix, SiSensor sensor, int nchan, double min, double max) {
+    private IHistogram1D createSensorPlot(String prefix, HpsSiSensor sensor, int nchan, double min, double max) {
         String hname = prefix + getNiceSensorName(sensor);
         IHistogram1D hist = aida.histogram1D(hname, nchan, min, max);
         hist.setTitle(sensor.getName().replaceAll(nameStrip, "")
@@ -168,7 +169,7 @@
         sigt0Names = new HashMap<String, String>();
         avgt0Map = new HashMap<String, Double>();
         sigt0Map = new HashMap<String, Double>();
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
             occupancyMap.put(sensor.getName(), new int[640]);
             avgOccupancyMap.put(sensor.getName(), -999.);
             String occName = "avgOcc_" + getNiceSensorName(sensor);
@@ -181,7 +182,7 @@
         }
     }
 
-    private String getNiceSensorName(SiSensor sensor) {
+    private String getNiceSensorName(HpsSiSensor sensor) {
         return sensor.getName().replaceAll(nameStrip, "")
                 .replace("module", "mod")
                 .replace("layer", "lyr")
@@ -199,7 +200,7 @@
     public void fillEndOfRunPlots() {
         // Plot strip occupancies.
         System.out.println("SvtMonitoring::endOfData  filling occupancy plots");
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
             Double avg = 0.0;
             //IHistogram1D sensorHist = aida.histogram1D(sensor.getName());
             IHistogram1D sensorHist = getSensorPlot(plotDir + "occupancy_", sensor);
@@ -236,10 +237,11 @@
 
         int irTop = 0;
         int irBot = 0;
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
             IHistogram1D sensPlot = getSensorPlot(plotDir + "t0Hit_", sensor);
             IFitResult result = fitGaussian(sensPlot, fitter, "range=\"(-8.0,8.0)\"");
-            boolean isTop = SvtUtils.getInstance().isTopLayer(sensor);
+            
+            boolean isTop = sensor.isTopLayer();
             if (isTop) {
                 plotterTop.region(irTop).plot(sensPlot);
                 plotterTop.region(irTop).plot(result.fittedFunction());
@@ -266,7 +268,7 @@
 
     @Override
     public void dumpDQMData() {
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
             String name = avgOccupancyNames.get(sensor.getName());
             double occ = avgOccupancyMap.get(sensor.getName());
             checkAndUpdate(name, occ);
@@ -281,7 +283,7 @@
 
     @Override
     public void printDQMData() {
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
             System.out.println(avgOccupancyNames.get(sensor.getName()) + ":  " + avgOccupancyMap.get(sensor.getName()));
             System.out.println(avgt0Names.get(sensor.getName()) + ":  " + avgt0Map.get(sensor.getName()));
             System.out.println(sigt0Names.get(sensor.getName()) + ":  " + sigt0Map.get(sensor.getName()));
@@ -290,7 +292,7 @@
 
     @Override
     public void printDQMStrings() {
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
             System.out.println("ALTER TABLE dqm ADD " + avgOccupancyNames.get(sensor.getName()) + " double;");
             System.out.println("ALTER TABLE dqm ADD " + avgt0Names.get(sensor.getName()) + " double;");
             System.out.println("ALTER TABLE dqm ADD " + sigt0Names.get(sensor.getName()) + " double;");

Modified: java/trunk/analysis/src/main/java/org/hps/analysis/examples/LCIOTrackAnalysis.java
 =============================================================================
--- java/trunk/analysis/src/main/java/org/hps/analysis/examples/LCIOTrackAnalysis.java	(original)
+++ java/trunk/analysis/src/main/java/org/hps/analysis/examples/LCIOTrackAnalysis.java	Mon Nov  3 02:54:53 2014
@@ -8,7 +8,8 @@
 import java.util.Map;
 import java.util.Set;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor; 
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.identifier.Identifier;
 import org.lcsim.event.MCParticle;
@@ -20,7 +21,6 @@
 /**
  *
  * @author Sho Uemura <[log in to unmask]>
- * @version $Id: LCIOTrackAnalysis.java,v 1.3 2013/10/24 18:11:43 meeg Exp $
  */
 public class LCIOTrackAnalysis {
 
@@ -73,15 +73,19 @@
                 int module = -1;
                 List<RawTrackerHit> rawHits = cl.getRawHits();
 //                System.out.println("RawHits: " + rawHits.size());
+                HpsSiSensor sensor = null; 
                 for (RawTrackerHit rawHit : rawHits) {
 //                    System.out.println(rawHit.getCellID());
                     IIdentifier id = new Identifier(rawHit.getCellID());
-                    int newLayer = SvtUtils.getInstance().getHelper().getValue(id, "layer");
+                    //===> int newLayer = SvtUtils.getInstance().getHelper().getValue(id, "layer");
+                    sensor = ((HpsSiSensor) rawHit.getDetectorElement());
+                    int newLayer = sensor.getLayerNumber();
                     if (layer != -1 && layer != newLayer) {
                         System.out.format("TrackerHit has hits from multiple layers: %d and %d\n", layer, newLayer);
                     }
                     layer = newLayer;
-                    int newModule = SvtUtils.getInstance().getHelper().getValue(id, "module");
+                    //===> int newModule = SvtUtils.getInstance().getHelper().getValue(id, "module");
+                    int newModule = sensor.getModuleNumber();
                     if (module != -1 && module != newModule) {
                         System.out.format("TrackerHit has hits from multiple modules: %d and %d\n", module, newModule);
                     }
@@ -98,7 +102,8 @@
                 _hitLocationPerLayer.put(layer, new BasicHep3Vector(cl.getPosition()));
                 _nhitsNew++;
 
-                boolean isAxial = SvtUtils.getInstance().isAxial(SvtUtils.getInstance().getSensor(module, layer - 1));
+                //===> boolean isAxial = SvtUtils.getInstance().isAxial(SvtUtils.getInstance().getSensor(module, layer - 1));
+                boolean isAxial = sensor.isAxial(); 
                 if (isAxial) {
                     _nAxialhits++;
                 } else {

Modified: java/trunk/analysis/src/main/java/org/hps/analysis/examples/TrackAnalysis.java
 =============================================================================
--- java/trunk/analysis/src/main/java/org/hps/analysis/examples/TrackAnalysis.java	(original)
+++ java/trunk/analysis/src/main/java/org/hps/analysis/examples/TrackAnalysis.java	Mon Nov  3 02:54:53 2014
@@ -1,17 +1,5 @@
-/*
- * TrackAnalysis.java
- *
- * Created on October 16, 2008, 6:09 PM
- *
- */
 package org.hps.analysis.examples;
 
-import hep.physics.matrix.BasicMatrix;
-import hep.physics.matrix.SymmetricMatrix;
-import hep.physics.vec.BasicHep3Matrix;
-import hep.physics.vec.BasicHep3Vector;
-import hep.physics.vec.Hep3Vector;
-import hep.physics.vec.VecOp;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.HashSet;
@@ -19,13 +7,20 @@
 import java.util.Map;
 import java.util.Set;
 import java.util.TreeMap;
+
+import hep.physics.matrix.BasicMatrix;
+import hep.physics.matrix.SymmetricMatrix;
+import hep.physics.vec.BasicHep3Matrix;
+import hep.physics.vec.BasicHep3Vector;
+import hep.physics.vec.Hep3Vector;
+import hep.physics.vec.VecOp;
+
 import org.apache.commons.math3.linear.Array2DRowRealMatrix;
 import org.apache.commons.math3.linear.ArrayRealVector;
 import org.apache.commons.math3.linear.EigenDecomposition;
 import org.apache.commons.math3.linear.RealMatrix;
-import org.hps.conditions.deprecated.SvtUtils;
-import static org.hps.recon.tracking.CoordinateTransformations.transformVectorToTracking;
-import org.hps.recon.tracking.TrackerHitUtils;
+
+import org.lcsim.detector.tracker.silicon.HpsSiSensor; 
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.identifier.Identifier;
 import org.lcsim.event.MCParticle;
@@ -40,10 +35,15 @@
 import org.lcsim.fit.helicaltrack.HelicalTrackHit;
 import org.lcsim.fit.helicaltrack.HelicalTrackStrip;
 
+//===> import org.hps.conditions.deprecated.SvtUtils;
+import static org.hps.recon.tracking.CoordinateTransformations.transformVectorToTracking;
+import org.hps.recon.tracking.TrackerHitUtils;
+
 /**
  *
  * @author Richard Partridge & Matt Graham
  */
+// TODO: This class needs to be cleaned up
 public class TrackAnalysis {
 
     private enum HelixPar {
@@ -221,11 +221,13 @@
             for (RawTrackerHit rawHit : rawHits) {
 //                    System.out.println(rawHit.getCellID());
                 IIdentifier id = new Identifier(rawHit.getCellID());
-                int newLayer = SvtUtils.getInstance().getHelper().getValue(id, "layer");
+                //===> int newLayer = SvtUtils.getInstance().getHelper().getValue(id, "layer");
+                int newLayer = ((HpsSiSensor) rawHit.getDetectorElement()).getLayerNumber();
                 if (layer != -1 && layer != newLayer)
                     System.out.format("TrackerHit has hits from multiple layers: %d and %d\n", layer, newLayer);
                 layer = newLayer;
-                int newModule = SvtUtils.getInstance().getHelper().getValue(id, "module");
+                //===> int newModule = SvtUtils.getInstance().getHelper().getValue(id, "module");
+                int newModule = ((HpsSiSensor) rawHit.getDetectorElement()).getModuleNumber();
                 if (module != -1 && module != newModule)
                     System.out.format("TrackerHit has hits from multiple modules: %d and %d\n", module, newModule);
                 module = newModule;

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/AbstractConditionsDriver.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/AbstractConditionsDriver.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/AbstractConditionsDriver.java	Mon Nov  3 02:54:53 2014
@@ -1,12 +1,9 @@
 package org.hps.conditions;
 
 import static org.hps.conditions.TableConstants.ECAL_CONDITIONS;
-import static org.hps.conditions.TableConstants.SVT_CONDITIONS;
 
 import org.hps.conditions.ecal.EcalConditions;
 import org.hps.conditions.ecal.EcalDetectorSetup;
-import org.hps.conditions.svt.SvtConditions;
-import org.hps.conditions.svt.SvtDetectorSetup;
 import org.lcsim.geometry.Detector;
 import org.lcsim.util.Driver;
 
@@ -24,7 +21,7 @@
     static DatabaseConditionsManager manager;
 
     private String ecalSubdetectorName = "Ecal";
-    private String svtSubdetectorName = "Tracker";
+    protected String svtSubdetectorName = "Tracker";
     
     boolean loadSvtConditions = true;
     boolean loadEcalConditions = true;
@@ -62,11 +59,7 @@
      * Load the SVT conditions onto the <code>Detector</code>.
      * @param detector The detector to update.
      */
-    private void loadSvtConditions(Detector detector) {
-        SvtConditions conditions = manager.getCachedConditions(SvtConditions.class, SVT_CONDITIONS).getCachedData();
-        SvtDetectorSetup loader = new SvtDetectorSetup();
-        loader.load(detector.getSubdetector(svtSubdetectorName), conditions);
-    }
+    protected abstract void loadSvtConditions(Detector detector);
 
     /**
      * Load the ECal conditions onto the <code>Detector</code>.

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/ConditionsDriver.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/ConditionsDriver.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/ConditionsDriver.java	Mon Nov  3 02:54:53 2014
@@ -1,10 +1,17 @@
 package org.hps.conditions;
 
+import org.lcsim.conditions.ConditionsManager;
+import org.lcsim.geometry.Detector;
+
+import org.hps.conditions.svt.SvtConditions;
+import org.hps.conditions.svt.SvtDetectorSetup;
+
+import static org.hps.conditions.TableConstants.SVT_CONDITIONS;
 /**
- * This {@link org.lcsim.util.Driver} is a subclass of {@link AbstractConditionsDriver}
- * and specifies the database connection parameters and configuration for the
- * development database. 
- * 
+ * This {@link org.lcsim.util.Driver} is a subclass of
+ * {@link AbstractConditionsDriver} and specifies the database connection
+ * parameters and configuration for the development database.
+ *
  * @author Omar Moreno <[log in to unmask]>
  * @author Jeremy McCormick <[log in to unmask]>
  */
@@ -15,11 +22,28 @@
 
     // Default database connection parameters, which points to the SLAC development database.
     static final String DB_CONNECTION = "/org/hps/conditions/config/conditions_dev.properties";
-    
-    public ConditionsDriver(){
-        manager = new DatabaseConditionsManager();
-        manager.setConnectionResource(DB_CONNECTION);
-        manager.configure(DB_CONFIG);
-        manager.register();
+
+    public ConditionsDriver() {
+        if (ConditionsManager.defaultInstance() instanceof DatabaseConditionsManager) {
+            System.out.println(this.getName()+": Found existing DatabaseConditionsManager");
+            manager = (DatabaseConditionsManager) ConditionsManager.defaultInstance();
+        } else {
+            manager = new DatabaseConditionsManager();
+            manager.setConnectionResource(DB_CONNECTION);
+            manager.configure(DB_CONFIG);
+            manager.register();
+        }
+    }
+
+    /**
+     * Load the {@link SvtConditions} set onto <code>HpsSiSensor</code>.
+     * 
+     * @param detector The detector to update.
+     */
+    @Override
+    protected void loadSvtConditions(Detector detector) {
+        SvtConditions conditions = manager.getCachedConditions(SvtConditions.class, SVT_CONDITIONS).getCachedData();
+        SvtDetectorSetup loader = new SvtDetectorSetup();
+        loader.load(detector.getSubdetector(svtSubdetectorName), conditions);
     }
 }

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/DatabaseConditionsManager.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/DatabaseConditionsManager.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/DatabaseConditionsManager.java	Mon Nov  3 02:54:53 2014
@@ -601,6 +601,26 @@
     public <CollectionType extends ConditionsObjectCollection> ConditionsSeries<CollectionType> getConditionsSeries(String conditionsKey) {
         return conditionsSeriesConverter.createSeries(conditionsKey);
     }
+    
+	/**
+	 * Get a given collection of the given type from the conditions database.
+	 * 
+	 * @param type Class type
+	 * @return A collection of objects of the given type from the conditions database
+	 */
+	public <CollectionType extends ConditionsObjectCollection> CollectionType getCollection(Class<CollectionType> type){
+		
+		// Get the table name from the database configuration
+		TableMetaData metaData = this.findTableMetaData(type);
+		if(metaData == null) 
+			throw new RuntimeException("Table name data for condition of type " + type.getSimpleName() + " was not found.");
+		String tableName = metaData.getTableName();
+
+		// FIXME: This should be changed to catch a conditions record not found exception instead of 
+		// 		  a runtime exception.
+		CollectionType conditionsCollection = this.getCachedConditions(type, tableName).getCachedData(); 
+		return conditionsCollection; 
+	}
        
     /**
      * Simple utility method to cast the generic <code>ConditionsManager</code> to this class.

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/TestRunConditionsDriver.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/TestRunConditionsDriver.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/TestRunConditionsDriver.java	Mon Nov  3 02:54:53 2014
@@ -1,4 +1,12 @@
 package org.hps.conditions;
+
+import org.lcsim.conditions.ConditionsManager;
+import org.lcsim.geometry.Detector;
+
+import org.hps.conditions.svt.TestRunSvtConditions;
+import org.hps.conditions.svt.TestRunSvtDetectorSetup;
+
+import static org.hps.conditions.TableConstants.SVT_CONDITIONS;
 
 /**
  * This {@link org.lcsim.util.Driver} is a subclass of {@link AbstractConditionsDriver}
@@ -14,13 +22,30 @@
     static final String TEST_RUN_CONFIG = "/org/hps/conditions/config/conditions_database_testrun_2012.xml";
 
     // Default database connection parameters, which points to the SLAC development database.
-    static final String TEST_RUN_CONNECTION = "/org/hps/conditions/config/conditions_database_testrun_2012_connection.properties";
+    static final String TEST_RUN_CONNECTION = "/org/hps/conditions/config/conditions_dev.properties";
 
     // Default constructor used to setup the database connection
     public TestRunConditionsDriver(){
-        manager = new DatabaseConditionsManager();
-        manager.setConnectionResource(TEST_RUN_CONNECTION);
-        manager.configure(TEST_RUN_CONFIG);
-        manager.register();
+        if (ConditionsManager.defaultInstance() instanceof DatabaseConditionsManager) {
+            System.out.println(this.getName()+": Found existing DatabaseConditionsManager");
+            manager = (DatabaseConditionsManager) ConditionsManager.defaultInstance();
+        } else { 
+            manager = new DatabaseConditionsManager();
+            manager.setConnectionResource(TEST_RUN_CONNECTION);
+            manager.configure(TEST_RUN_CONFIG);
+            manager.register();
+        }
+    }
+
+    /**
+     * Load the {@link TestRunSvtConditions} set onto <code>HpsTestRunSiSensor</code>.
+     * 
+     * @param detector The detector to update.
+     */
+    @Override
+    protected void loadSvtConditions(Detector detector) {
+        TestRunSvtConditions conditions = manager.getCachedConditions(TestRunSvtConditions.class, SVT_CONDITIONS).getCachedData();
+        TestRunSvtDetectorSetup loader = new TestRunSvtDetectorSetup();
+        loader.load(detector.getSubdetector(svtSubdetectorName), conditions);
     }
 }

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/config/TestRunReadOnlyConfiguration.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/config/TestRunReadOnlyConfiguration.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/config/TestRunReadOnlyConfiguration.java	Mon Nov  3 02:54:53 2014
@@ -20,7 +20,7 @@
     private static final int runNumber = 1351;
     
     private static final String config = "/org/hps/conditions/config/conditions_database_testrun_2012.xml";
-    private static final String prop = "/org/hps/conditions/config/conditions_database_testrun_2012_connection.properties";
+    private static final String prop = "/org/hps/conditions/config/conditions_dev.properties";
    
     public TestRunReadOnlyConfiguration() {
         super(config, prop);

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/deprecated/CalibrationDriver.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/deprecated/CalibrationDriver.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/deprecated/CalibrationDriver.java	Mon Nov  3 02:54:53 2014
@@ -23,7 +23,7 @@
 
     public CalibrationDriver() {
         add(new EcalConditions());
-        add(new HPSSVTSensorSetup());
+        //add(new HPSSVTSensorSetup());
     }
 
     public void setRunNumber(int runNumber) {
@@ -55,10 +55,10 @@
         	EcalConditions.setGainFilename(gainFilename);
         	EcalConditions.loadCalibration();
         }
-        if (fixRunNumber && (!HPSSVTCalibrationConstants.pedestalLoaded() || !HPSSVTCalibrationConstants.tpLoaded())) {
+        /*if (fixRunNumber && (!HPSSVTCalibrationConstants.pedestalLoaded() || !HPSSVTCalibrationConstants.tpLoaded())) {
             System.out.println("Loading calibration for set run: " + runNumber);
             loadCalibsByRun(runNumber);
-        }
+        }*/
     }
 
     @Override
@@ -76,7 +76,7 @@
     }
 
     private void loadCalibsByRun(int run) {
-        HPSSVTCalibrationConstants.loadCalibration(run);
+        //HPSSVTCalibrationConstants.loadCalibration(run);
         FieldMap.loadFieldMap(run);
     }
 

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsConverter.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsConverter.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsConverter.java	Mon Nov  3 02:54:53 2014
@@ -1,11 +1,4 @@
 package org.hps.conditions.ecal;
-
-import static org.hps.conditions.TableConstants.ECAL_BAD_CHANNELS;
-import static org.hps.conditions.TableConstants.ECAL_CALIBRATIONS;
-import static org.hps.conditions.TableConstants.ECAL_CHANNELS;
-import static org.hps.conditions.TableConstants.ECAL_GAINS;
-import static org.hps.conditions.TableConstants.ECAL_TIME_SHIFTS;
-
 
 import org.lcsim.conditions.ConditionsConverter;
 import org.lcsim.conditions.ConditionsManager;
@@ -17,18 +10,16 @@
 import org.hps.conditions.ecal.EcalGain.EcalGainCollection;
 import org.hps.conditions.ecal.EcalTimeShift.EcalTimeShiftCollection;
 import org.hps.conditions.DatabaseConditionsManager;
-import org.hps.conditions.TableMetaData;
 
 /**
- * This class loads all ecal conditions into an {@link EcalConditions} object from the
+ * This class loads all ECal conditions into an {@link EcalConditions} object from the
  * database, based on the current run number known by the conditions manager.
  * 
  * @author Jeremy McCormick <[log in to unmask]>
+ * @author Omar Moreno <[log in to unmask]>
  */
 public final class EcalConditionsConverter implements ConditionsConverter<EcalConditions> {
 
-	private TableMetaData metaData = null; 
-	private String tableName = null;
 	
     /**
      * Create ECAL conditions object containing all data for the current run.
@@ -37,92 +28,46 @@
 
     	DatabaseConditionsManager dbConditionsManager = (DatabaseConditionsManager) manager;
 
-        // Get the table name containing the Ecal channel map from the database
-        // configuration.  If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(EcalChannelCollection.class);
-        if(metaData != null){
-        	tableName = metaData.getTableName();
-        } else { 
-        	tableName = ECAL_CHANNELS;  
-        }
-        // Get the Ecal channel map from the conditions database
-        EcalChannelCollection channels = manager.getCachedConditions(EcalChannelCollection.class, tableName).getCachedData();
+        // Get the ECal channel map from the conditions database
+        EcalChannelCollection channels = dbConditionsManager.getCollection(EcalChannelCollection.class);
 
-    	// Create the Ecal conditions object that will be used to encapsulate
-        // Ecal conditions collections
+    	// Create the ECal conditions object that will be used to encapsulate
+        // ECal conditions collections
         EcalConditions conditions = new EcalConditions();
         
         // Set the channel map.
         conditions.setChannelCollection(channels);
 
-        System.out.println("channel collection size = " + channels.getObjects().size());
-
-        // Get the table name containing the Ecal gains from the database
-        // configuration. If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(EcalGainCollection.class);
-        if(metaData != null){
-        	tableName = metaData.getTableName();
-        } else { 
-        	tableName = ECAL_GAINS;  
-        }
-        // Add the gains
-        EcalGainCollection gains = manager.getCachedConditions(EcalGainCollection.class, tableName).getCachedData();
+        // Get the ECal gains from the conditions database and add them to the conditions set
+        EcalGainCollection gains = dbConditionsManager.getCollection(EcalGainCollection.class);
         for (EcalGain gain : gains.getObjects()) {
             ChannelId channelId = new ChannelId(new int[] {gain.getChannelId()});
             EcalChannel channel = channels.findChannel(channelId);
             conditions.getChannelConstants(channel).setGain(gain);
         }
 
-        // Get the table name containing the Ecal bad channel map from the 
-        // database configuration. If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(EcalBadChannelCollection.class);
-        if(metaData != null){
-        	tableName = metaData.getTableName();
-        } else { 
-        	tableName = ECAL_BAD_CHANNELS;  
-        }
-        
-        // Add bad channels.
-        // FIXME: This should be changed to catch a conditions record not found
-        // exception instead of a runtime exception
+        // Get the ECal bad channels and add them to the conditions set 
         try { 
-        	EcalBadChannelCollection badChannels = manager.getCachedConditions(EcalBadChannelCollection.class, tableName).getCachedData();
+        	EcalBadChannelCollection badChannels = dbConditionsManager.getCollection(EcalBadChannelCollection.class);
         	for (EcalBadChannel badChannel : badChannels.getObjects()) {
         		ChannelId channelId = new ChannelId(new int[] {badChannel.getChannelId()});
         		EcalChannel channel = channels.findChannel(channelId);
         		conditions.getChannelConstants(channel).setBadChannel(true);
         	}
         } catch(RuntimeException e){
-        	e.printStackTrace();
+        	System.out.println("[ " + conditions.getClass().getSimpleName() + "]: A set of bad channels were not found!");
         }
 
-        
-        // Get the table name containing the Ecal calibrations (pedestal, noise)
-        // from the database configuration. If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(EcalCalibrationCollection.class);
-        if(metaData != null){
-        	tableName = metaData.getTableName();
-        } else { 
-        	tableName = ECAL_CALIBRATIONS;  
-        }
-        // Add calibrations including pedestal and noise values.
-        EcalCalibrationCollection calibrations = manager.getCachedConditions(EcalCalibrationCollection.class, tableName).getCachedData();
+        // Get the ECal calibrations from the conditions database and add them to the conditions set.
+        EcalCalibrationCollection calibrations = dbConditionsManager.getCollection(EcalCalibrationCollection.class);
         for (EcalCalibration calibration : calibrations.getObjects()) {
             ChannelId channelId = new ChannelId(new int[] {calibration.getChannelId()});
             EcalChannel channel = channels.findChannel(channelId);
             conditions.getChannelConstants(channel).setCalibration(calibration);
         }
 
-        // Get the table name containing the Ecal calibrations (pedestal, noise)
-        // from the database configuration. If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(EcalTimeShiftCollection.class);
-        if(metaData != null){
-        	tableName = metaData.getTableName();
-        } else { 
-        	tableName = ECAL_TIME_SHIFTS;  
-        }
-        // Add time shifts.
-        EcalTimeShiftCollection timeShifts = manager.getCachedConditions(EcalTimeShiftCollection.class, tableName).getCachedData();
+        // Get the ECal time shifts from the conditions database and add them to the conditions set.
+        EcalTimeShiftCollection timeShifts = dbConditionsManager.getCollection(EcalTimeShiftCollection.class);
         for (EcalTimeShift timeShift : timeShifts.getObjects()) {
             ChannelId channelId = new ChannelId(new int[] {timeShift.getChannelId()});
             EcalChannel channel = channels.findChannel(channelId);

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsUtil.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsUtil.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/ecal/EcalConditionsUtil.java	Mon Nov  3 02:54:53 2014
@@ -61,7 +61,7 @@
      * @param cellId The cell ID of the hit.
      * @return The crate number of the channel.
      */
-    int getCrate(IIdentifierHelper helper, long cellId) {
+    public int getCrate(IIdentifierHelper helper, long cellId) {
         return findChannel(helper, cellId).getCrate();
     }
 
@@ -71,7 +71,7 @@
      * @param cellId The cell ID of the hit.
      * @return The slot number of the channel.
      */
-    int getSlot(IIdentifierHelper helper, long cellId) {
+    public int getSlot(IIdentifierHelper helper, long cellId) {
         return findChannel(helper, cellId).getSlot();
     }
 

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtChannel.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtChannel.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtChannel.java	Mon Nov  3 02:54:53 2014
@@ -2,13 +2,8 @@
 
 import java.util.ArrayList;
 import java.util.Collection;
-import java.util.HashMap;
 import java.util.List;
-import java.util.Map;
 
-import org.hps.conditions.AbstractConditionsObject;
-import org.hps.conditions.ConditionsObjectCollection;
-import org.hps.conditions.ConditionsObjectException;
 import org.hps.util.Pair;
 
 /**
@@ -18,38 +13,18 @@
  * @author Jeremy McCormick <[log in to unmask]>
  * @author Omar Moreno <[log in to unmask]>
  */
-public final class SvtChannel extends AbstractConditionsObject {
+public final class SvtChannel extends AbstractSvtChannel {
 
-	public static final int MAX_NUMBER_OF_SAMPLES = 6;
 
-	public static class SvtChannelCollection extends ConditionsObjectCollection<SvtChannel> {
-
-        Map<Integer, SvtChannel> channelMap = new HashMap<Integer, SvtChannel>();
-
-        public void add(SvtChannel channel) {
-            // Add to map.
-            if (channelMap.containsKey(channel.getChannelID())) {
-                throw new IllegalArgumentException("Channel ID already exists: " + channel.getChannelID());
-            }
-            channelMap.put(channel.getChannelID(), channel);
-
-            // Add to collection.
-            try {
-                super.add(channel);
-            } catch (ConditionsObjectException e) {
-                throw new RuntimeException(e);
-            }
-        }
-
-        public SvtChannel findChannel(int channelId) {
-            return channelMap.get(channelId);
-        }
+	public static class SvtChannelCollection 
+	    extends AbstractSvtChannel.AbstractSvtChannelCollection<SvtChannel> {
 
         /**
          * Find channels that match a DAQ pair (FEB ID, FEB Hybrid ID).
          * @param pair The DAQ pair.
          * @return The channels matching the DAQ pair or null if not found.
          */
+	    @Override
         public Collection<SvtChannel> find(Pair<Integer, Integer> pair) {
             List<SvtChannel> channels = new ArrayList<SvtChannel>();
             int febID = pair.getFirstElement();
@@ -61,26 +36,6 @@
             }
             return channels;
         }
-
-        /**
-         * Convert this object to a human readable string.
-         * @return This object converted to a string.
-         */
-        public String toString() {
-            StringBuffer buff = new StringBuffer();
-            for (SvtChannel channel : this.getObjects()) {
-                buff.append(channel.toString() + '\n');
-            }
-            return buff.toString();
-        }
-    }
-
-    /**
-     * Get the channel ID.
-     * @return The channel ID.
-     */
-    public int getChannelID() {
-        return getFieldValue("channel_id");
     }
 
     /**
@@ -100,19 +55,14 @@
     }
 
     /**
-     * Get the channel number. This is different from the ID.
-     * @return The channel number.
-     */
-    public int getChannel() {
-        return getFieldValue("channel");
-    }
-
-    /**
      * Convert this object to a human readable string.
      * @return This object as a string.
      */
     public String toString() {
-        return "channel_id: " + getChannelID() + ", feb_id: " + getFebID() + ", feb_hybrid_id: " + getFebHybridID() + ", channel: " + getChannel();
+        return "channel_id: " + getChannelID() +
+               ", feb_id: " + getFebID() + 
+               ", feb_hybrid_id: " + getFebHybridID() +
+               ", channel: " + getChannel();
     }
 
     /**
@@ -127,6 +77,9 @@
         if (o == this)
             return true;
         SvtChannel channel = (SvtChannel) o;
-        return getChannelID() == channel.getChannelID() && getFebID() == channel.getFebID() && getFebHybridID() == channel.getFebHybridID() && getChannel() == channel.getChannel();
+        return getChannelID() == channel.getChannelID() 
+                && getFebID() == channel.getFebID() 
+                && getFebHybridID() == channel.getFebHybridID() 
+                && getChannel() == channel.getChannel();
     }
 }

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditions.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditions.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditions.java	Mon Nov  3 02:54:53 2014
@@ -1,58 +1,33 @@
 package org.hps.conditions.svt;
-
-import java.util.HashMap;
-import java.util.Map;
 
 import org.hps.conditions.svt.SvtChannel.SvtChannelCollection;
 import org.hps.conditions.svt.SvtDaqMapping.SvtDaqMappingCollection;
+
 import org.hps.conditions.svt.SvtT0Shift.SvtT0ShiftCollection;
 
+// TODO: Move all constants to their own class
 import static org.hps.conditions.svt.SvtChannel.MAX_NUMBER_OF_SAMPLES;
 
 /**
- * This class contains all SVT conditions data by readout channel. {@link SvtChannel}
- * objects from the {@linkSvtChannelMap} should be used to lookup the conditions using the
- * {@link #getChannelConstants(SvtChannel)} method.
+ * 
+ * This class contains all test run SVT conditions data by readout channel. 
+ * {@link SvtChannel} objects from the SVT channel map should be used to
+ * lookup the conditions using the {@link #getChannelConstants(SvtChannel)}
+ * method.
  * 
  * @author Jeremy McCormick <[log in to unmask]>
  * @author Omar Moreno <[log in to unmask]>
  */
-public final class SvtConditions {
+public final class SvtConditions extends AbstractSvtConditions {
 
-    /** SVT conditions data. */
-    private Map<SvtChannel, ChannelConstants> channelData = new HashMap<SvtChannel, ChannelConstants>();
-    private SvtChannelCollection channelMap = null;
-    private SvtDaqMappingCollection daqMap = null;
-    private SvtT0ShiftCollection t0Shifts = null;
-
-    /**
-     * Class constructor, which takes a channel map.
+	/**
+     * Get the {@link SvtDaqMappingCollection} associated with these conditions.
      * 
-     * @param channelMap The SVT channel map.
+     * @return The SVT DAQ map.
      */
-    SvtConditions(SvtChannelCollection channelMap) {
-        this.channelMap = channelMap;
-    }
-
-    /**
-     * Get the conditions constants for a specific channel. These will be created if they
-     * do not exist for the given channel, BUT only channels in the current channel map
-     * are allowed as an argument.
-     * 
-     * @param channel The SVT channel.
-     * @return The conditions constants for the channel.
-     * @throws IllegalArgumentException if .
-     */
-    public ChannelConstants getChannelConstants(SvtChannel channel) {
-        // This channel must come from the map.
-        if (!channelMap.getObjects().contains(channel)) {
-            System.err.println("Channel not found in map => " + channel);
-            throw new IllegalArgumentException("Channel was not found in map.");
-        }
-        // If channel has no data yet, then add it.
-        if (!channelData.containsKey(channel))
-            channelData.put(channel, new ChannelConstants());
-        return channelData.get(channel);
+    @Override
+    public SvtDaqMappingCollection getDaqMap(){
+        return (SvtDaqMappingCollection) daqMap;
     }
 
     /**
@@ -60,45 +35,21 @@
      * 
      * @return The SVT channel map.
      */
-    public SvtChannelCollection getChannelMap() {
-        return channelMap;
+    @Override
+    public SvtChannelCollection getChannelMap(){
+        return (SvtChannelCollection) channelMap;
     }
-
+    
     /**
-     * Get the {@link SvtDaqMappingCollection} associated with these conditions.
+     * Get the {@link SvtT0ShiftCollection} associated with these conditions.
      * 
-     * @return The SVT DAQ map.
+     * @return The {@link SvtT0ShiftCollection}
      */
-    public SvtDaqMappingCollection getDaqMap() {
-        return daqMap;
+    @Override
+    public SvtT0ShiftCollection getT0Shifts() { 
+    	return (SvtT0ShiftCollection) t0Shifts;
     }
-
-    /**
-     * Get the {@link SvtT0ShiftCollection}.
-     * 
-     * @return The t0 shifts by sensor.
-     */
-    public SvtT0ShiftCollection getT0Shifts() {
-        return t0Shifts;
-    }
-
-    /**
-     * Set the {@link SvtDaqMappingCollection} associated with these conditions.
-     * 
-     * @param daqMap The SVT DAQ map.
-     */
-    void setDaqMap(SvtDaqMappingCollection daqMap) {
-        this.daqMap = daqMap;
-    }
-
-    /**
-     * Set the sensor t0 shifts.
-     * 
-     * @param t0Shifts The sensor time shifts collection.
-     */
-    void setTimeShifts(SvtT0ShiftCollection t0Shifts) {
-        this.t0Shifts = t0Shifts;
-    }
+    
 
     /**
      * Convert this object to a human readable string. This method prints a formatted
@@ -168,7 +119,7 @@
         }
         buff.append('\n');
         // Loop over channels.
-        for (SvtChannel channel : channelMap.getObjects()) {
+        for (SvtChannel channel : this.getChannelMap().getObjects()) {
 
             // Get the conditions for the channel.
             ChannelConstants constants = getChannelConstants(channel);

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsConverter.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsConverter.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsConverter.java	Mon Nov  3 02:54:53 2014
@@ -1,24 +1,10 @@
 package org.hps.conditions.svt;
 
-import static org.hps.conditions.TableConstants.SVT_BAD_CHANNELS;
-import static org.hps.conditions.TableConstants.SVT_CALIBRATIONS;
-import static org.hps.conditions.TableConstants.SVT_CHANNELS;
-import static org.hps.conditions.TableConstants.SVT_DAQ_MAP;
-import static org.hps.conditions.TableConstants.SVT_GAINS;
-import static org.hps.conditions.TableConstants.SVT_PULSE_PARAMETERS;
-import static org.hps.conditions.TableConstants.SVT_TIME_SHIFTS;
-
+import org.lcsim.conditions.ConditionsManager;
 import org.hps.conditions.DatabaseConditionsManager;
-import org.hps.conditions.TableMetaData;
-import org.hps.conditions.svt.SvtBadChannel.SvtBadChannelCollection;
-import org.hps.conditions.svt.SvtCalibration.SvtCalibrationCollection;
 import org.hps.conditions.svt.SvtChannel.SvtChannelCollection;
 import org.hps.conditions.svt.SvtDaqMapping.SvtDaqMappingCollection;
-import org.hps.conditions.svt.SvtGain.SvtGainCollection;
-import org.hps.conditions.svt.SvtShapeFitParameters.SvtShapeFitParametersCollection;
 import org.hps.conditions.svt.SvtT0Shift.SvtT0ShiftCollection;
-import org.lcsim.conditions.ConditionsConverter;
-import org.lcsim.conditions.ConditionsManager;
 
 /**
  * This class creates an {@link SvtConditions} object from the database, based on the
@@ -27,129 +13,39 @@
  * @author Jeremy McCormick <[log in to unmask]>
  * @author Omar Moreno <[log in to unmask]>
  */
-public final class SvtConditionsConverter implements ConditionsConverter<SvtConditions> {
+public final class SvtConditionsConverter extends AbstractSvtConditionsConverter<SvtConditions> {
 
-	private TableMetaData metaData = null; 
-	private String tableName = null; 
+	public SvtConditionsConverter(){
+		this.conditions = new SvtConditions();
+	}
 	
     /**
-     * Create and return the SVT conditions object.
+     * Create and return an {@link SvtConditions} object 
+     * 
      * @param manager The current conditions manager.
      * @param name The conditions key, which is ignored for now.
      */
+    @Override
     public SvtConditions getData(ConditionsManager manager, String name) {
-    
+    	
     	DatabaseConditionsManager dbConditionsManager = (DatabaseConditionsManager) manager;
-    	
-        // Get the table name containing the SVT channel map from the 
-    	// database configuration.  If it doesn't exist, use the default value.
-    	metaData = dbConditionsManager.findTableMetaData(SvtChannelCollection.class);
-    	if(metaData != null){
-    		tableName = metaData.getTableName();
-    	} else { 
-    		tableName = SVT_CHANNELS; 
-    	}
-    	// Get the SVT channel map from the conditions database
-    	SvtChannelCollection channels 
-    		= dbConditionsManager.getCachedConditions(SvtChannelCollection.class, tableName).getCachedData();
+
+    	// Get the channel map from the conditions database
+        SvtChannelCollection channels = dbConditionsManager.getCollection(SvtChannelCollection.class); 
+
+        // Create the SVT conditions object to use to encapsulate SVT condition collections
+        conditions.setChannelMap(channels);
+       
+    	// Get the DAQ map from the conditions database
+    	SvtDaqMappingCollection daqMap= dbConditionsManager.getCollection(SvtDaqMappingCollection.class);
+        conditions.setDaqMap(daqMap);
         
-        // Create the SVT conditions object to use to encapsulate SVT condition collections
-        SvtConditions conditions = new SvtConditions(channels);
-
-        // Get the table name containing the SVT DAQ map from the database
-        // configuration.  If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(SvtDaqMappingCollection.class);
-    	if(metaData != null){
-    		tableName = metaData.getTableName();
-    	} else { 
-    		tableName = SVT_DAQ_MAP; 
-    	}
-        // Get the DAQ map from the conditions database
-        SvtDaqMappingCollection daqMap = manager.getCachedConditions(SvtDaqMappingCollection.class, tableName).getCachedData();
-        conditions.setDaqMap(daqMap);
-
-        // Get the table name containing the SVT calibrations (baseline, noise)
-        // from the database configuration.  If it doesn't exist, use the 
-        // default value.
-        metaData = dbConditionsManager.findTableMetaData(SvtCalibrationCollection.class);
-    	if(metaData != null){
-    		tableName = metaData.getTableName();
-    	} else { 
-    		tableName = SVT_CALIBRATIONS; 
-    	}
-    	// Get the calibrations from the conditions database
-        SvtCalibrationCollection calibrations = manager.getCachedConditions(SvtCalibrationCollection.class, tableName).getCachedData();
-        for (SvtCalibration calibration : calibrations.getObjects()) {
-            SvtChannel channel = conditions.getChannelMap().findChannel(calibration.getChannelID());
-            conditions.getChannelConstants(channel).setCalibration(calibration);
-        }
-
-        // Get the table name containing the SVT pulse shape parameters from 
-        // the database configuration.  If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(SvtShapeFitParametersCollection.class);
-    	if(metaData != null){
-    		tableName = metaData.getTableName();
-    	} else { 
-    		tableName = SVT_PULSE_PARAMETERS; 
-    	}
-        // Add pulse parameters by channel.
-        SvtShapeFitParametersCollection shapeFitParametersCollection = manager.getCachedConditions(SvtShapeFitParametersCollection.class, tableName).getCachedData();
-        for (SvtShapeFitParameters shapeFitParameters : shapeFitParametersCollection.getObjects()) {
-            SvtChannel channel = conditions.getChannelMap().findChannel(shapeFitParameters.getChannelID());
-            conditions.getChannelConstants(channel).setShapeFitParameters(shapeFitParameters);
-        }
-
-        // Get the table name containing the SVT bad channel map from the 
-        // database configuration.  If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(SvtBadChannelCollection.class);
-    	if(metaData != null){
-    		tableName = metaData.getTableName();
-    	} else { 
-    	}
-    		tableName = SVT_BAD_CHANNELS; 
-    	
-        // Add bad channels.
-        // FIXME: This should be changed to catch a conditions record not found exception instead of 
-    	// 		  a runtime exception.
-    	try { 
-        	SvtBadChannelCollection badChannels = manager.getCachedConditions(SvtBadChannelCollection.class, tableName).getCachedData();
-        	for (SvtBadChannel badChannel : badChannels.getObjects()) {
-        		SvtChannel channel = conditions.getChannelMap().findChannel(badChannel.getChannelId());
-        		conditions.getChannelConstants(channel).setBadChannel(true);
-        	}
-        } catch(RuntimeException e){
-        	e.printStackTrace();
-        }
-
-        // Get the table name containing the SVT gains from the database
-        // configuration.  If it doesn't exist, use the default value.
-        metaData = dbConditionsManager.findTableMetaData(SvtGainCollection.class);
-    	if(metaData != null){
-    		tableName = metaData.getTableName();
-    	} else { 
-    		tableName = SVT_GAINS; 
-    	}
+        // Get the collection of T0 shifts from the conditions database
+        SvtT0ShiftCollection t0Shifts = dbConditionsManager.getCollection(SvtT0ShiftCollection.class);
+        conditions.setT0Shifts(t0Shifts);
         
-        // Add gains by channel.
-        SvtGainCollection gains = manager.getCachedConditions(SvtGainCollection.class, tableName).getCachedData();
-        for (SvtGain object : gains.getObjects()) {
-            int channelId = object.getChannelID();
-            SvtChannel channel = conditions.getChannelMap().findChannel(channelId);
-            conditions.getChannelConstants(channel).setGain(object);
-        }
-
-        // Get the table name containing the SVT t0 shifts. If it doesn't 
-        // exist, use the default value. 
-        metaData = dbConditionsManager.findTableMetaData(SvtT0ShiftCollection.class);
-    	if(metaData != null){
-    		tableName = metaData.getTableName();
-    	} else { 
-    		tableName = SVT_TIME_SHIFTS; 
-    	}	
-        // Set the t0 shifts by sensor.
-        SvtT0ShiftCollection t0Shifts = manager.getCachedConditions(SvtT0ShiftCollection.class, tableName).getCachedData();
-        conditions.setTimeShifts(t0Shifts);
-
+        conditions = super.getData(manager, name);
+        
         return conditions;
     }
 
@@ -157,6 +53,7 @@
      * Get the type handled by this converter.
      * @return The type handled by this converter.
      */
+    @Override
     public Class<SvtConditions> getType() {
         return SvtConditions.class;
     }

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConverterRegistry.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConverterRegistry.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConverterRegistry.java	Mon Nov  3 02:54:53 2014
@@ -10,9 +10,13 @@
 import org.hps.conditions.svt.SvtGain.SvtGainCollection;
 import org.hps.conditions.svt.SvtShapeFitParameters.SvtShapeFitParametersCollection;
 import org.hps.conditions.svt.SvtT0Shift.SvtT0ShiftCollection;
+import org.hps.conditions.svt.TestRunSvtChannel.TestRunSvtChannelCollection;
+import org.hps.conditions.svt.TestRunSvtDaqMapping.TestRunSvtDaqMappingCollection;
+import org.hps.conditions.svt.TestRunSvtT0Shift.TestRunSvtT0ShiftCollection;
 
 /**
  * Definitions of converters from the database to SVT specific conditions classes.
+ * 
  * @author Jeremy McCormick <[log in to unmask]>
  */
 @SuppressWarnings({ "unchecked", "rawtypes" })
@@ -71,4 +75,22 @@
             return SvtT0ShiftCollection.class;
         }
     }
+    
+    public static class TestRunSvtDaqMappingConverter extends ConditionsObjectConverter<TestRunSvtDaqMappingCollection> {
+        public Class getType() {
+            return TestRunSvtDaqMappingCollection.class;
+        }
+    }
+    
+    public static class TestRunSvtChannelConverter extends ConditionsObjectConverter<TestRunSvtChannelCollection> {
+        public Class getType(){
+            return TestRunSvtChannelCollection.class;
+        }
+    }
+
+    public static class TestRunSvtT0ShiftConverter extends ConditionsObjectConverter<TestRunSvtT0ShiftCollection> {
+        public Class getType() {
+            return TestRunSvtT0ShiftCollection.class;
+        }
+    }
 }

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDaqMapping.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDaqMapping.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDaqMapping.java	Mon Nov  3 02:54:53 2014
@@ -2,8 +2,6 @@
 
 import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 
-import org.hps.conditions.AbstractConditionsObject;
-import org.hps.conditions.ConditionsObjectCollection;
 import org.hps.util.Pair;
 
 /**
@@ -12,32 +10,19 @@
  * @author Jeremy McCormick <[log in to unmask]>
  * @author Omar Moreno <[log in to unmask]>
  */
-public final class SvtDaqMapping extends AbstractConditionsObject {
+public class SvtDaqMapping extends AbstractSvtDaqMapping {
 
-    public static class SvtDaqMappingCollection extends ConditionsObjectCollection<SvtDaqMapping> {
+    public static class SvtDaqMappingCollection 
+            extends AbstractSvtDaqMappingCollection<SvtDaqMapping> {
 
         /**
-         * Flag values for top or bottom half.
+         * Get a DAQ pair (FEB ID, FEB Hybrid ID) for the given 
+         * {@link HpsSiSensor}
+         * 
+		 * @param  sensor A sensor of type {@link HpsSiSensor}
+		 * @return The DAQ pair associated with the sensor 
          */
-        public static final String TOP_HALF = "T";
-        public static final String BOTTOM_HALF = "B";
-        
-        /**
-         * Flag values for axial or stereo sensors 
-         */
-        public static final String AXIAL = "A";
-        public static final String STEREO = "S";
-
-        /**
-         * Get a DAQ pair (FEB ID, FEB Hybrid ID) by SVT volume, layer number
-         * and module number.
-         * 
-         * @param svtHalf Value indicating top or bottom half of detector
-         * @param layerNumber The layer number
-         * @param moduleNumber The module number (needed to identify layer's 4-6)
-         * @return The DAQ pair for the half and layer number or null if does not exist.
-         */
-        Pair<Integer, Integer> getDaqPair(HpsSiSensor sensor) {
+        public Pair<Integer, Integer> getDaqPair(HpsSiSensor sensor) {
         	
         	String svtHalf = sensor.isTopLayer() ? TOP_HALF : BOTTOM_HALF;
         	for (SvtDaqMapping object : this.getObjects()) {
@@ -120,19 +105,7 @@
     	return getFieldValue("feb_hybrid_id");
     }
     
-    public String getSvtHalf() {
-        return getFieldValue("svt_half");
-    }
-
-    public int getLayerNumber() {
-        return getFieldValue("layer");
-    }
-    
     public String getSide(){
     	return getFieldValue("side");
     }
-
-    public String getOrientation() { 
-    	return getFieldValue("orientation");
-    }
 }

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDetectorSetup.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDetectorSetup.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtDetectorSetup.java	Mon Nov  3 02:54:53 2014
@@ -98,7 +98,7 @@
             }
 
             // Set the t0 shift for the sensor.
-            SvtT0Shift sensorT0Shift = t0Shifts.find(daqPair).get(0);
+            SvtT0Shift sensorT0Shift = t0Shifts.getT0Shift(daqPair);
             sensor.setT0Shift(sensorT0Shift.getT0Shift());
         }
     }

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtT0Shift.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtT0Shift.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtT0Shift.java	Mon Nov  3 02:54:53 2014
@@ -1,8 +1,5 @@
 package org.hps.conditions.svt;
 
-import org.hps.conditions.AbstractConditionsObject;
-import org.hps.conditions.ConditionsObjectCollection;
-import org.hps.conditions.ConditionsObjectException;
 import org.hps.util.Pair;
 
 /**
@@ -12,48 +9,46 @@
  * @author Jeremy McCormick <[log in to unmask]>
  * @author Omar Moreno <[log in to unmask]>
  */
-public final class SvtT0Shift extends AbstractConditionsObject {
+public final class SvtT0Shift extends AbstractSvtT0Shift {
 
-    public static class SvtT0ShiftCollection extends ConditionsObjectCollection<SvtT0Shift> {
+    public static class SvtT0ShiftCollection 
+        extends AbstractSvtT0Shift.AbstractSvtT0ShiftCollection<SvtT0Shift> {
 
-        SvtT0ShiftCollection find(Pair<Integer, Integer> pair) {
-            SvtT0ShiftCollection t0Shifts = new SvtT0ShiftCollection();
+        /**
+         * Get the {@link SvtT0Shift} associated with a given DAQ pair
+         * 
+         * @param DAQ pair for a given sensor
+         * @return The {@link SvtT0Shift} associated with the DAQ pair.  If a t0 shift
+         *         for a given DAQ pair can't be found, it returns null.
+         */
+        @Override
+        public SvtT0Shift getT0Shift(Pair<Integer, Integer> pair) {
             int febID = pair.getFirstElement();
             int febHybridID = pair.getSecondElement();
-            for (SvtT0Shift timeShift : getObjects()) {
-                if (timeShift.getFebID() == febID && timeShift.getFebHybridID() == febHybridID) {
-                    try {
-                        t0Shifts.add(timeShift);
-                    } catch (ConditionsObjectException e) {
-                        throw new RuntimeException(e);
-                    }
+            for (SvtT0Shift t0Shift : this.getObjects()) {
+                if (t0Shift.getFebID() == febID && t0Shift.getFebHybridID() == febHybridID) {
+                    return t0Shift;
                 }
             }
-            return t0Shifts;
+            return null;
         }
     }
 
     /**
-     * Get the FPGA number.
-     * @return The FPGA number.
+     * Get the FEB ID.
+     * 
+     * @return The FEB ID.
      */
     int getFebID() {
         return getFieldValue("feb_id");
     }
 
     /**
-     * Get the hybrid number.
-     * @return The hybrid number.
+     * Get the FEB hybrid ID.
+     *
+     * @return The FEB hybrid ID.
      */
     int getFebHybridID() {
         return getFieldValue("feb_hybrid_id");
     }
-
-    /**
-     * Get the time shift.
-     * @return The time shift.
-     */
-    double getT0Shift() {
-        return getFieldValue("t0_shift");
-    }
 }

Modified: java/trunk/conditions/src/main/resources/org/hps/conditions/config/conditions_database_testrun_2012.xml
 =============================================================================
--- java/trunk/conditions/src/main/resources/org/hps/conditions/config/conditions_database_testrun_2012.xml	(original)
+++ java/trunk/conditions/src/main/resources/org/hps/conditions/config/conditions_database_testrun_2012.xml	Mon Nov  3 02:54:53 2014
@@ -6,18 +6,14 @@
         <converter class="org.hps.conditions.ConditionsRecordConverter"/>
 
         <!-- SVT converters -->
-        <!--          
-        <converter class="org.hps.conditions.svt.SvtConditionsConverter"/>
+        <converter class="org.hps.conditions.svt.TestRunSvtConditionsConverter"/>
+        <converter class="org.hps.conditions.svt.SvtConverterRegistry$TestRunSvtChannelConverter"/>
+        <converter class="org.hps.conditions.svt.SvtConverterRegistry$TestRunSvtDaqMappingConverter"/>
+        <converter class="org.hps.conditions.svt.SvtConverterRegistry$TestRunSvtT0ShiftConverter"/>
+        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtCalibrationConverter"/>
+        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtShapeFitParametersConverter"/>
+        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtGainConverter"/>
         <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtBadChannelConverter"/>
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtCalibrationConverter"/>
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtChannelConverter"/>
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtDaqMappingConverter"/>
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtGainConverter"/>
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtPulseParametersConverter"/> 
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtShapeFitParametersConverter"/>
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtTimeShiftConverter"/>
-        <converter class="org.hps.conditions.svt.SvtConverterRegistry$SvtT0ShiftConverter"/>
-        -->
 
         <!-- ECal converters -->
         <converter class="org.hps.conditions.ecal.EcalConditionsConverter"/>
@@ -33,7 +29,7 @@
 
     <tables>
     
-        <table key="conditions_records" name="conditions_dev">
+        <table key="conditions_records" name="conditions">
             <classes> 
                 <object class="org.hps.conditions.ConditionsRecord"/>
                 <collection class="org.hps.conditions.ConditionsRecord$ConditionsRecordCollection"/>
@@ -54,11 +50,10 @@
             </fields>
         </table>
 
-<!--      
-        <table key="svt_channels" name="svt_channels">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtChannel"/>
-                <collection class="org.hps.conditions.svt.SvtChannel$SvtChannelCollection"/>
+        <table key="test_run_svt_channels" name="test_run_svt_channels">
+            <classes>
+                <object class="org.hps.conditions.svt.TestRunSvtChannel"/>
+                <collection class="org.hps.conditions.svt.TestRunSvtChannel$TestRunSvtChannelCollection"/>
             </classes>
             <fields>
                 <field name="channel_id" />
@@ -68,7 +63,42 @@
             </fields>
         </table>
     
-        <table key="svt_gains" name="svt_gains">
+        <table key="test_run_svt_calibrations" name="test_run_svt_calibrations">
+            <classes>
+                <object class="org.hps.conditions.svt.SvtCalibration"/>
+                <collection class="org.hps.conditions.svt.SvtCalibration$SvtCalibrationCollection"/>
+            </classes>
+            <fields>
+                <field name="svt_channel_id" />
+                <field name="pedestal_0" />
+                <field name="pedestal_1" />
+                <field name="pedestal_2" />
+                <field name="pedestal_3" />
+                <field name="pedestal_4" />
+                <field name="pedestal_5" />
+                <field name="noise_0" />
+                <field name="noise_1" />
+                <field name="noise_2" />
+                <field name="noise_3" />
+                <field name="noise_4" />
+                <field name="noise_5" />
+            </fields>        
+        </table>
+
+        <table key="test_run_svt_shape_fit_parameters" name="test_run_svt_shape_fit_parameters">
+            <classes>
+                <object class="org.hps.conditions.svt.SvtShapeFitParameters"/>
+                <collection class="org.hps.conditions.svt.SvtShapeFitParameters$SvtShapeFitParametersCollection"/>
+            </classes>
+            <fields>
+                <field name="svt_channel_id"    />
+                <field name="amplitude"         />
+                <field name="t0"                />
+                <field name="tp"                />
+            </fields>        
+        </table>
+
+        <table key="test_run_svt_gains" name="test_run_svt_gains">
             <classes>
                 <object class="org.hps.conditions.svt.SvtGain"/> 
                 <collection class="org.hps.conditions.svt.SvtGain$SvtGainCollection"/>
@@ -78,137 +108,78 @@
                 <field name="gain" />
                 <field name="offset" />
             </fields>
-        </table>        
-        
-        <table key="svt_pulse_parameters" name="svt_pulse_parameters">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtShapeFitParameters"/>
-                <collection class="org.hps.conditions.svt.SvtShapeFitParameters$SvtShapeFitParametersCollection"/>
+        </table>       
+         
+        <table key="test_run_svt_t0_shifts" name="test_run_svt_t0_shifts">
+            <classes>
+                <object class="org.hps.conditions.svt.TestRunSvtT0Shift"/>
+                <collection class="org.hps.conditions.svt.TestRunSvtT0Shift$TestRunSvtT0ShiftCollection"/>
+            </classes>
+            <fields>
+                <field name="fpga"        />
+                <field name="hybrid" />
+                <field name="t0_shift"      />
+            </fields>        
+        </table>
+         
+        <table key="test_run_svt_bad_channels" name="test_run_svt_bad_channels">
+            <classes>
+                <object class="org.hps.conditions.svt.SvtBadChannel"/>
+                <collection class="org.hps.conditions.svt.SvtBadChannel$SvtBadChannelCollection"/>
             </classes>
             <fields>
                 <field name="svt_channel_id" />
-                <field name="amplitude" />
-                <field name="t0" />
-                <field name="tp" />
-            </fields>        
-        </table>
--->        
-
-<!--         
-        <table key="svt_pulse_parameters" name="svt_pulse_parameters">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtPulseParameters"/>
-                <collection class="org.hps.conditions.svt.SvtPulseParameters$SvtPulseParametersCollection"/>
-            </classes>
-            <fields>
-                <field name="svt_channel_id" />
-                <field name="amplitude" />
-                <field name="t0" />
-                <field name="tp" />
-                <field name="chisq" />
-            </fields>        
-        </table>
--->
-        
-<!--          
-        <table key="svt_calibrations" name="svt_calibrations">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtCalibration"/>
-                <collection class="org.hps.conditions.svt.SvtCalibration$SvtCalibrationCollection"/>
-            </classes>
-            <fields>
-                <field name="svt_channel_id" />
+            </fields>        
+        </table>
+       
+       <table key="test_run_svt_daq_map" name="test_run_svt_daq_map">
+            <classes>
+                <object class="org.hps.conditions.svt.TestRunSvtDaqMapping"/>
+                <collection class="org.hps.conditions.svt.TestRunSvtDaqMapping$TestRunSvtDaqMappingCollection"/>
+            </classes>
+            <fields>
+                <field name="fpga" />
+                <field name="hybrid" />
+                <field name="svt_half" />
+                <field name="layer" />
+                <field name="orientation" />
+            </fields>  
+        </table>   
+        
+        <table key="test_run_ecal_bad_channels" name="test_run_ecal_bad_channels">
+            <classes>
+                <object class="org.hps.conditions.ecal.EcalBadChannel"/>
+                <collection class="org.hps.conditions.ecal.EcalBadChannel$EcalBadChannelCollection"/>
+            </classes>
+            <fields>
+                <field name="ecal_channel_id" />
+            </fields>  
+        </table>
+        
+        <table key="test_run_ecal_gains" name="test_run_ecal_gains">
+            <classes>
+                <object class="org.hps.conditions.ecal.EcalGain"/>
+                <collection class="org.hps.conditions.ecal.EcalGain$EcalGainCollection"/>
+            </classes>
+            <fields>
+                <field name="ecal_channel_id" />
+                <field name="gain" />
+            </fields>  
+        </table>
+        
+        <table key="test_run_ecal_calibrations" name="test_run_ecal_calibrations">
+            <classes>
+                <object class="org.hps.conditions.ecal.EcalCalibration"/>
+                <collection class="org.hps.conditions.ecal.EcalCalibration$EcalCalibrationCollection"/>
+            </classes>
+            <fields>
+                <field name="ecal_channel_id" />
                 <field name="noise" />
                 <field name="pedestal" />
-            </fields>        
-        </table>
--->        
-
-<!--                  
-        <table key="svt_t0_shifts" name="svt_t0_shifts">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtT0Shift"/>
-                <collection class="org.hps.conditions.svt.SvtT0Shift$SvtT0ShiftCollection"/>
-            </classes>
-            <fields>
-                <field name="feb_id" />
-                <field name="feb_hybrid_id" />
-                <field name="t0_shift" />
-            </fields>        
-        </table>
-        
-        <table key="svt_time_shifts" name="svt_time_shifts">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtTimeShift"/>
-                <collection class="org.hps.conditions.svt.SvtTimeShift$SvtTimeShiftCollection"/>
-            </classes>
-            <fields>
-                <field name="fpga" />
-                <field name="hybrid" />
-                <field name="time_shift" />
-            </fields>        
-        </table>
--->        
-
-<!--          
-        <table key="svt_bad_channels" name="svt_bad_channels">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtBadChannel"/>
-                <collection class="org.hps.conditions.svt.SvtBadChannel$SvtBadChannelCollection"/>
-            </classes>
-            <fields>
-                <field name="svt_channel_id" />
-            </fields>        
-        </table>
-        
-        <table key="svt_daq_map" name="svt_daq_map">
-            <classes>
-                <object class="org.hps.conditions.svt.SvtDaqMapping"/>
-                <collection class="org.hps.conditions.svt.SvtDaqMapping$SvtDaqMappingCollection"/>
-            </classes>
-            <fields>
-                <field name="half" />
-                <field name="layer" />
-                <field name="fpga" />
-                <field name="hybrid" />
-            </fields>  
-        </table>
--->        
-        
-        <table key="ecal_bad_channels" name="ecal_bad_channels">
-            <classes>
-                <object class="org.hps.conditions.ecal.EcalBadChannel"/>
-                <collection class="org.hps.conditions.ecal.EcalBadChannel$EcalBadChannelCollection"/>
-            </classes>
-            <fields>
-                <field name="ecal_channel_id" />
-            </fields>  
-        </table>
-        
-        <table key="ecal_gains" name="ecal_gains">
-            <classes>
-                <object class="org.hps.conditions.ecal.EcalGain"/>
-                <collection class="org.hps.conditions.ecal.EcalGain$EcalGainCollection"/>
-            </classes>
-            <fields>
-                <field name="ecal_channel_id" />
-                <field name="gain" />
-            </fields>  
-        </table>
-        
-        <table key="ecal_calibrations" name="ecal_calibrations">
-            <classes>
-                <object class="org.hps.conditions.ecal.EcalCalibration"/>
-                <collection class="org.hps.conditions.ecal.EcalCalibration$EcalCalibrationCollection"/>
-            </classes>
-            <fields>
-                <field name="ecal_channel_id" />
-                <field name="noise" />
-                <field name="pedestal" />
-            </fields>  
-        </table>
-        
-        <table key="ecal_channels" name="ecal_channels">
+            </fields>  
+        </table>
+        
+        <table key="test_run_ecal_channels" name="test_run_ecal_channels">
             <classes>
                 <object class="org.hps.conditions.ecal.EcalChannel"/>
                 <collection class="org.hps.conditions.ecal.EcalChannel$EcalChannelCollection"/>
@@ -223,7 +194,7 @@
             </fields>  
         </table>
         
-        <table key="ecal_time_shifts" name="ecal_time_shifts">
+        <table key="test_run_ecal_time_shifts" name="test_run_ecal_time_shifts">
             <classes>
                 <object class="org.hps.conditions.ecal.EcalTimeShift"/>
                 <collection class="org.hps.conditions.ecal.EcalTimeShift$EcalTimeShiftCollection"/>

Modified: java/trunk/conditions/src/test/java/org/hps/conditions/ConditionsTestRunTest.java
 =============================================================================
--- java/trunk/conditions/src/test/java/org/hps/conditions/ConditionsTestRunTest.java	(original)
+++ java/trunk/conditions/src/test/java/org/hps/conditions/ConditionsTestRunTest.java	Mon Nov  3 02:54:53 2014
@@ -11,7 +11,7 @@
 public class ConditionsTestRunTest extends TestCase {
         
     static String config = "/org/hps/conditions/config/conditions_database_testrun_2012.xml";
-    static String prop = "/org/hps/conditions/config/conditions_database_testrun_2012_connection.properties";
+    static String prop = "/org/hps/conditions/config/conditions_dev.properties";
     
     public void testConditionsTestRun() {
 
@@ -40,4 +40,4 @@
             }
         }
     }
-}
+}

Modified: java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalConditionsConverterTest.java
 =============================================================================
--- java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalConditionsConverterTest.java	(original)
+++ java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalConditionsConverterTest.java	Mon Nov  3 02:54:53 2014
@@ -3,7 +3,7 @@
 import junit.framework.TestCase;
 
 import org.hps.conditions.DatabaseConditionsManager;
-import org.hps.conditions.config.TestRunReadOnlyConfiguration;
+import org.hps.conditions.config.DevReadOnlyConfiguration;
 
 /**
  * Tests that a {@link EcalConditions} objects loads without errors.
@@ -13,8 +13,8 @@
 
     DatabaseConditionsManager conditionsManager;
     
-    public void setUp() {
-        new TestRunReadOnlyConfiguration(true);
+    public void setUp() {                
+        new DevReadOnlyConfiguration().setup().load("HPS-Proposal2014-v7-2pt2", 0);
         conditionsManager = DatabaseConditionsManager.getInstance();
     }
 

Modified: java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalGainCompareTest.java
 =============================================================================
--- java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalGainCompareTest.java	(original)
+++ java/trunk/conditions/src/test/java/org/hps/conditions/ecal/EcalGainCompareTest.java	Mon Nov  3 02:54:53 2014
@@ -34,8 +34,8 @@
         calibrationDriver.detectorChanged(conditionsManager.getDetectorObject());
         
         // Fetch conditions from the database.
-        EcalGainCollection gains = conditionsManager.getConditionsData(EcalGainCollection.class, TableConstants.ECAL_GAINS);
-        EcalChannelCollection channels = conditionsManager.getConditionsData(EcalChannelCollection.class, TableConstants.ECAL_CHANNELS);
+        EcalGainCollection gains = conditionsManager.getConditionsData(EcalGainCollection.class, "test_run_ecal_gains");
+        EcalChannelCollection channels = conditionsManager.getConditionsData(EcalChannelCollection.class, "test_run_ecal_channels");
         
         // Loop over the gain values and compare them with each other.
         int nCompared = 0;

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v1/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v1/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v1/compact.xml	Mon Nov  3 02:54:53 2014
@@ -51,7 +51,7 @@
     <detectors>
         <detector id="1" name="SVT" type="HPSTracker2" readout="SVTSimTrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v2/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v2/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v2/compact.xml	Mon Nov  3 02:54:53 2014
@@ -156,7 +156,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v3-split/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v3-split/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v3-split/compact.xml	Mon Nov  3 02:54:53 2014
@@ -212,7 +212,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v3/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v3/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v3/compact.xml	Mon Nov  3 02:54:53 2014
@@ -168,7 +168,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v4/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v4/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v4/compact.xml	Mon Nov  3 02:54:53 2014
@@ -502,7 +502,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v5/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v5/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v5/compact.xml	Mon Nov  3 02:54:53 2014
@@ -514,7 +514,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v6/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v6/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v6/compact.xml	Mon Nov  3 02:54:53 2014
@@ -514,7 +514,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v7-2/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v7-2/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v7-2/compact.xml	Mon Nov  3 02:54:53 2014
@@ -759,7 +759,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v7-3/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v7-3/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v7-3/compact.xml	Mon Nov  3 02:54:53 2014
@@ -757,7 +757,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material="Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v7/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v7/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v7/compact.xml	Mon Nov  3 02:54:53 2014
@@ -514,7 +514,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v8-4/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v8-4/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v8-4/compact.xml	Mon Nov  3 02:54:53 2014
@@ -738,7 +738,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material="Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v8-5/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v8-5/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v8-5/compact.xml	Mon Nov  3 02:54:53 2014
@@ -738,7 +738,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material="Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/detector-data/detectors/HPS-TestRun-v8/compact.xml
 =============================================================================
--- java/trunk/detector-data/detectors/HPS-TestRun-v8/compact.xml	(original)
+++ java/trunk/detector-data/detectors/HPS-TestRun-v8/compact.xml	Mon Nov  3 02:54:53 2014
@@ -737,7 +737,7 @@
     <detectors>
         <detector id="1" name="Tracker" type="HPSTracker2" readout="TrackerHits" combineHits="true">
             <comment>The Silicon Vertex Tracker</comment>
-            <module name="TestRunModule">
+            <module name="TestRunModule" type="HpsTestRunSiSensor">
                 <box x="moduleLength" y="moduleWidth" />
                 <module_component thickness="0.032*cm" material = "Silicon" sensitive="true">
                     <dimensions x="sensorLength" y="sensorWidth" /> 

Modified: java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/FADCEcalReadoutDriver.java
 =============================================================================
--- java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/FADCEcalReadoutDriver.java	(original)
+++ java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/FADCEcalReadoutDriver.java	Mon Nov  3 02:54:53 2014
@@ -15,7 +15,10 @@
 import java.util.PriorityQueue;
 import java.util.Set;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalChannelConstants;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
 import org.hps.recon.ecal.ECalUtils;
 import org.hps.recon.ecal.HPSRawCalorimeterHit;
 import org.lcsim.event.CalorimeterHit;
@@ -43,8 +46,9 @@
     private static final int ECAL_WINDOW_MODE = 1;
     private static final int ECAL_PULSE_MODE = 2;
     private static final int ECAL_PULSE_INTEGRAL_MODE = 3;
-    String ecalName = "Ecal";
-    Subdetector ecal;
+    private String ecalName = "Ecal";
+    private Subdetector ecal;
+    private EcalConditions ecalConditions = null;
     //buffer for preamp signals (units of volts, no pedestal)
     private Map<Long, RingBuffer> signalMap = null;
     //ADC pipeline for readout (units of ADC counts)
@@ -229,9 +233,12 @@
 
             FADCPipeline pipeline = pipelineMap.get(cellID);
             pipeline.step();
+            
+            // Get the channel data.
+            EcalChannelConstants channelData = findChannel(cellID);
 
             double currentValue = signalBuffer.currentValue() * ((Math.pow(2, nBit) - 1) / maxVolt); //12-bit ADC with maxVolt V range
-            int pedestal = (int) Math.round(EcalConditions.physicalToPedestal(cellID));
+            int pedestal = (int) Math.round(channelData.getCalibration().getPedestal());
             int digitizedValue = Math.min((int) Math.round(pedestal + currentValue), (int) Math.pow(2, nBit)); //ADC can't return a value larger than 4095; 4096 (overflow) is returned for any input >2V
             pipeline.writeValue(digitizedValue);
             int pedestalSubtractedValue = digitizedValue - pedestal;
@@ -374,6 +381,10 @@
             int pointerOffset = 0;
             int numSamplesToRead = 0;
             int thresholdCrossing = 0;
+            
+            // Get the channel data.
+            EcalChannelConstants channelData = findChannel(cellID);
+            
             for (int i = 0; i < readoutWindow; i++) {
                 if (numSamplesToRead != 0) {
                     adcValues[adcValues.length - numSamplesToRead] = window[i - pointerOffset];
@@ -381,7 +392,7 @@
                     if (numSamplesToRead == 0) {
                         hits.add(new BaseRawTrackerHit(cellID, thresholdCrossing, adcValues));
                     }
-                } else if ((i == 0 || window[i - 1] <= EcalConditions.physicalToPedestal(cellID) + readoutThreshold) && window[i] > EcalConditions.physicalToPedestal(cellID) + readoutThreshold) {
+                } else if ((i == 0 || window[i - 1] <= channelData.getCalibration().getPedestal() + readoutThreshold) && window[i] > channelData.getCalibration().getPedestal() + readoutThreshold) {
                     thresholdCrossing = i;
                     pointerOffset = Math.min(numSamplesBefore, i);
                     numSamplesToRead = pointerOffset + Math.min(numSamplesAfter, readoutWindow - i - pointerOffset - 1);
@@ -401,6 +412,10 @@
             int pointerOffset = 0;
             int numSamplesToRead = 0;
             int thresholdCrossing = 0;
+            
+            // Get the channel data.
+            EcalChannelConstants channelData = findChannel(cellID);
+            
             if (window != null) {
                 for (int i = 0; i < readoutWindow; i++) {
                     if (numSamplesToRead != 0) {
@@ -412,7 +427,7 @@
                         if (numSamplesToRead == 0) {
                             hits.add(new BaseRawCalorimeterHit(cellID, adcSum, 64 * thresholdCrossing));
                         }
-                    } else if ((i == 0 || window[i - 1] <= EcalConditions.physicalToPedestal(cellID) + readoutThreshold) && window[i] > EcalConditions.physicalToPedestal(cellID) + readoutThreshold) {
+                    } else if ((i == 0 || window[i - 1] <= channelData.getCalibration().getPedestal() + readoutThreshold) && window[i] > channelData.getCalibration().getPedestal() + readoutThreshold) {
                         thresholdCrossing = i;
                         pointerOffset = Math.min(numSamplesBefore, i);
                         numSamplesToRead = pointerOffset + Math.min(numSamplesAfter, readoutWindow - i - pointerOffset - 1);
@@ -430,13 +445,15 @@
         for (CalorimeterHit hit : hits) {
             RingBuffer eDepBuffer = signalMap.get(hit.getCellID());
             double energyAmplitude = hit.getRawEnergy();
+            // Get the channel data.
+            EcalChannelConstants channelData = findChannel(hit.getCellID());
             if (addNoise) {
                 //add preamp noise and photoelectron Poisson noise in quadrature
                 double noise;
                 if (use2014Gain) {
-                    noise = Math.sqrt(Math.pow(EcalConditions.physicalToNoise(hit.getCellID()) * EcalConditions.physicalToGain(hit.getCellID()) * ECalUtils.gainFactor * ECalUtils.ecalReadoutPeriod, 2) + hit.getRawEnergy() / (ECalUtils.lightYield * ECalUtils.quantumEff * ECalUtils.surfRatio));
+                    noise = Math.sqrt(Math.pow(channelData.getCalibration().getNoise() * channelData.getGain().getGain() * ECalUtils.gainFactor * ECalUtils.ecalReadoutPeriod, 2) + hit.getRawEnergy() / (ECalUtils.lightYield * ECalUtils.quantumEff * ECalUtils.surfRatio));
                 } else {
-                    noise = Math.sqrt(Math.pow(EcalConditions.physicalToNoise(hit.getCellID()) * EcalConditions.physicalToGain(hit.getCellID()) * ECalUtils.MeV, 2) + hit.getRawEnergy() * ECalUtils.MeV / pePerMeV);
+                    noise = Math.sqrt(Math.pow(channelData.getCalibration().getNoise() * channelData.getGain().getGain() * ECalUtils.MeV, 2) + hit.getRawEnergy() * ECalUtils.MeV / pePerMeV);
                 }
                 energyAmplitude += RandomGaussian.getGaussian(0, noise);
             }
@@ -459,6 +476,11 @@
     public void detectorChanged(Detector detector) {
         // Get the Subdetector.
         ecal = detector.getSubdetector(ecalName);
+        
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+        
         resetFADCBuffers();
     }
 
@@ -470,20 +492,24 @@
         pipelineMap = new HashMap<Long, FADCPipeline>();
         Set<Long> cells = ((HPSEcal3) ecal).getNeighborMap().keySet();
         for (Long cellID : cells) {
+        	EcalChannelConstants channelData = findChannel(cellID);
             signalMap.put(cellID, new RingBuffer(bufferLength));
-            pipelineMap.put(cellID, new FADCPipeline(pipelineLength, (int) Math.round(EcalConditions.physicalToPedestal(cellID))));
+            pipelineMap.put(cellID, new FADCPipeline(pipelineLength, (int) Math.round(channelData.getCalibration().getPedestal())));
         }
         return true;
     }
 
     private double pulseAmplitude(double time, long cellID) {
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(cellID);
+    	
         if (use2014Gain) {
             //if fixedGain is set, multiply the default gain by this factor
             double corrGain;
             if (fixedGain > 0) {
                 corrGain = fixedGain;
             } else {
-                corrGain = 1.0 / EcalConditions.physicalToGain(cellID);
+                corrGain = 1.0 / channelData.getGain().getGain();
             }
 
             return corrGain * readoutGain * pulseAmplitude(time, pulseShape, tp);
@@ -493,7 +519,7 @@
             if (fixedGain > 0) {
                 gain = readoutPeriod / (fixedGain * ECalUtils.MeV * ((Math.pow(2, nBit) - 1) / maxVolt));
             } else {
-                gain = readoutPeriod / (EcalConditions.physicalToGain(cellID) * ECalUtils.MeV * ((Math.pow(2, nBit) - 1) / maxVolt));
+                gain = readoutPeriod / (channelData.getGain().getGain() * ECalUtils.MeV * ((Math.pow(2, nBit) - 1) / maxVolt));
             }
 
             return gain * pulseAmplitude(time, pulseShape, tp);
@@ -539,8 +565,8 @@
 
     public class FADCPipeline {
 
-        private int[] array;
-        private int size;
+        private final int[] array;
+        private final int size;
         private int ptr;
 
         public FADCPipeline(int size) {
@@ -584,4 +610,14 @@
             return array[((ptr - pos) % size + size) % size];
         }
     }
+    
+    /** 
+     * Convert physical ID to gain value.
+     * @param cellID (long)
+     * @return channel constants (EcalChannelConstants)
+     */
+    private EcalChannelConstants findChannel(long cellID) {
+        return ecalConditions.getChannelConstants(ecalConditions.getChannelCollection().findGeometric(cellID));
+    }
+    
 }

Modified: java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/MollerTriggerDriver.java
 =============================================================================
--- java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/MollerTriggerDriver.java	(original)
+++ java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/MollerTriggerDriver.java	Mon Nov  3 02:54:53 2014
@@ -493,4 +493,4 @@
     private int clusterHitCountCount = 0;                          // Track the clusters which pass the hit count cut.
     private int clusterTotalEnergyCount = 0;                       // Track the clusters which pass the total energy cut.
     private int clusterPositionCount = 0;                          // Track the clusters which pass the positional cut.
-}
+}

Modified: java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/SimpleEcalReadoutDriver.java
 =============================================================================
--- java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/SimpleEcalReadoutDriver.java	(original)
+++ java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/SimpleEcalReadoutDriver.java	Mon Nov  3 02:54:53 2014
@@ -8,19 +8,22 @@
 import org.lcsim.event.CalorimeterHit;
 
 /**
- * Performs readout of ECal hits.
- * No time evolution - this just integrates all hits in a cycle.
+ * Performs readout of ECal hits. No time evolution - this just integrates all
+ * hits in a cycle.
  *
  * @author Sho Uemura <[log in to unmask]>
- * @version $Id: SimpleEcalReadoutDriver.java,v 1.1 2013/02/25 22:39:26 meeg Exp $
+ * @version $Id: SimpleEcalReadoutDriver.java,v 1.1 2013/02/25 22:39:26 meeg Exp
+ * $
  */
 public class SimpleEcalReadoutDriver extends EcalReadoutDriver<HPSCalorimeterHit> {
+
     //buffer for deposited energy
+
     Map<Long, Double> eDepMap = null;
 
-	public SimpleEcalReadoutDriver() {
-		hitClass = HPSCalorimeterHit.class;
-	}
+    public SimpleEcalReadoutDriver() {
+        hitClass = HPSCalorimeterHit.class;
+    }
 
     @Override
     protected void readHits(List<HPSCalorimeterHit> hits) {
@@ -31,8 +34,10 @@
 //            int side = dec.getValue("side");
 //            if (iy == 1 && ix*side >= -10 && ix*side <= -2)
 //                continue;
-            if (eDepMap.get(cellID) > threshold)
-                hits.add(new HPSCalorimeterHit(eDepMap.get(cellID), readoutTime(), cellID, hitType));
+            if (eDepMap.get(cellID) > threshold) {
+                HPSCalorimeterHit h = new HPSCalorimeterHit(eDepMap.get(cellID), readoutTime(), cellID, hitType);
+                hits.add(h);
+            }
         }
         //reset hit integration
         eDepMap = new HashMap<Long, Double>();

Modified: java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/TimeEvolutionEcalReadoutDriver.java
 =============================================================================
--- java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/TimeEvolutionEcalReadoutDriver.java	(original)
+++ java/trunk/ecal-readout-sim/src/main/java/org/hps/readout/ecal/TimeEvolutionEcalReadoutDriver.java	Mon Nov  3 02:54:53 2014
@@ -15,14 +15,13 @@
  * @version $Id: TimeEvolutionEcalReadoutDriver.java,v 1.1 2013/02/25 22:39:26 meeg Exp $
  */
 public class TimeEvolutionEcalReadoutDriver extends EcalReadoutDriver<HPSCalorimeterHit> {
-
     //buffer for deposited energy
     Map<Long, RingBuffer> eDepMap = null;
     //length of ring buffer (in readout cycles)
     int bufferLength = 20;
     //shaper time constant in ns; negative values generate square pulses of the given width
     double t0 = 18.0;
-
+    
     public TimeEvolutionEcalReadoutDriver() {
 		hitClass = HPSCalorimeterHit.class;
     }
@@ -41,11 +40,8 @@
         for (Long cellID : eDepMap.keySet()) {
             RingBuffer eDepBuffer = eDepMap.get(cellID);
             if (eDepBuffer.currentValue() > threshold) {
-//                int ix = dec.getValue("ix");
-//                int iy = dec.getValue("iy");
-//                if (iy == 1 && ix == -2)
-//                    System.out.printf("Time %f, output signal %f\n", ClockSingleton.getTime(), eDepBuffer.currentValue());
-                hits.add(new HPSCalorimeterHit(eDepBuffer.currentValue(), readoutTime(), cellID, hitType));
+            	HPSCalorimeterHit h = new HPSCalorimeterHit(eDepBuffer.currentValue(), readoutTime(), cellID, hitType);
+            	hits.add(h);
             }
             eDepBuffer.step();
         }
@@ -55,11 +51,6 @@
     protected void putHits(List<CalorimeterHit> hits) {
         //fill the readout buffers
         for (CalorimeterHit hit : hits) {
-//            int ix = dec.getValue("ix");
-//            int iy = dec.getValue("iy");
-//            if (iy == 1 && ix == -2)
-//                System.out.printf("Time %f, input hit %f)\n", ClockSingleton.getTime() + hit.getTime(), hit.getRawEnergy());
-
             RingBuffer eDepBuffer = eDepMap.get(hit.getCellID());
             if (eDepBuffer == null) {
                 eDepBuffer = new RingBuffer(bufferLength);

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/CTPEcalClusterer.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/CTPEcalClusterer.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/CTPEcalClusterer.java	Mon Nov  3 02:54:53 2014
@@ -30,6 +30,8 @@
  * @version $Id: CTPEcalClusterer.java,v 1.1 2013/02/25 22:39:24 meeg Exp $
  */
 public class CTPEcalClusterer extends Driver {
+	
+	Detector detector = null;
     // The calorimeter object.
     HPSEcal3 ecal;
     IDDecoder dec;
@@ -73,6 +75,7 @@
         this.ecalName = ecalName;
     }
     
+    @Override
     public void startOfData() {
         // Make sure that there is a cluster collection name into which clusters may be placed.
         if (ecalCollectionName == null) {
@@ -87,6 +90,9 @@
     
     @Override
     public void detectorChanged(Detector detector) {
+    	
+    	this.detector = detector;
+    	
         // Get the Subdetector.
         ecal = (HPSEcal3) detector.getSubdetector(ecalName);
         
@@ -118,6 +124,7 @@
         }
     }
     
+    @Override
     public void process(EventHeader event) {
         // Make sure that this event has calorimeter hits.
         if (event.hasCollection(CalorimeterHit.class, ecalCollectionName)) {
@@ -127,7 +134,7 @@
             // Define a list of clusters to be filled.
             List<HPSEcalCluster> clusters;
             
-            // If there is a cluster window, run the clsuter window code. A cluster window is a time
+            // If there is a cluster window, run the cluster window code. A cluster window is a time
             // period in nanoseconds during which hits can be applied to the same cluster.
             if (clusterWindow >= 0) {
                 // Create priority queues. These are sorted by the time variable associated with each hit.
@@ -344,17 +351,16 @@
                 }
                 
                 // Generate a new cluster seed hit from the above results.
-                CalorimeterHit seedHit = new HPSCalorimeterHit(0.0, clusterTime, possibleCluster, hits.get(0).getType());
+                HPSCalorimeterHit seedHit = new HPSCalorimeterHit(0.0, clusterTime, possibleCluster, hits.get(0).getType());               
                 seedHit.setMetaData(hits.get(0).getMetaData());
                 
                 // Generate a new cluster from the seed hit.
-                HPSEcalCluster cluster = new HPSEcalCluster(seedHit);
-                
+                HPSEcalCluster cluster = new HPSEcalCluster();
+                cluster.setSeedHit(seedHit);
                 // Populate the cluster with each of the chosen neighbors.
                 for (CalorimeterHit clusterHit : hits) {
                     cluster.addHit(clusterHit);
                 }
-                
                 // Add the cluster to the cluster list.
                 clusters.add(cluster);
             }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/ECalUtils.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/ECalUtils.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/ECalUtils.java	Mon Nov  3 02:54:53 2014
@@ -75,7 +75,6 @@
         }
     }
     
-    
     /*These methods have been added by A. Celentano: they're mostly used in the monitoring drivers related to Ecal:
      * however, instead of keeping them in a class "EcalMonitoringUtils", it seems better to have them here.
      */
@@ -99,6 +98,4 @@
         }
         return ret;
     }
-    
-    
 }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterICBasic.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterICBasic.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterICBasic.java	Mon Nov  3 02:54:53 2014
@@ -188,7 +188,7 @@
             }
             if (biggestSeed == null) { //if no neighbors had more energy than this hit, this hit is a seed
                 hitToSeed.put(hit, hit);
-                HPSEcalCluster cluster = new HPSEcalCluster(hit);
+                HPSEcalCluster cluster = new HPSEcalCluster(hit.getCellID());
                 clusters.add(cluster);
                 seedToCluster.put(hit, cluster);
             } else {

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterer.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterer.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterer.java	Mon Nov  3 02:54:53 2014
@@ -26,6 +26,8 @@
  * @version $Id: EcalClusterer.java,v 1.1 2013/02/25 22:39:24 meeg Exp $
  */
 public class EcalClusterer extends Driver {
+	
+	Detector detector = null;
 
     HPSEcal3 ecal;
     String ecalCollectionName;
@@ -77,6 +79,9 @@
     }
 
     public void detectorChanged(Detector detector) {
+    	
+    	this.detector = detector;
+    	
         // Get the Subdetector.
         ecal = (HPSEcal3) detector.getSubdetector(ecalName);
 
@@ -158,7 +163,8 @@
             // Did we find a seed?
             if (isSeed) {
                 // Make a cluster from the hit list.
-                HPSEcalCluster cluster = new HPSEcalCluster(hit);
+                HPSEcalCluster cluster = new HPSEcalCluster();
+                cluster.setSeedHit(hit);
                 cluster.addHit(hit);
                 for (CalorimeterHit clusHit : neighborHits) {
                     cluster.addHit(clusHit);

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalConverterDriver.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalConverterDriver.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalConverterDriver.java	Mon Nov  3 02:54:53 2014
@@ -2,9 +2,11 @@
 
 import java.util.ArrayList;
 import java.util.List;
+
 import org.lcsim.event.CalorimeterHit;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawCalorimeterHit;
+import org.lcsim.geometry.Detector;
 import org.lcsim.util.Driver;
 import org.lcsim.lcio.LCIOConstants;
 
@@ -14,6 +16,8 @@
  * @version $Id: EcalConverterDriver.java,v 1.1 2013/02/25 22:39:24 meeg Exp $
  */
 public class EcalConverterDriver extends Driver {
+	
+	Detector detector = null;
 
     String rawCollectionName;
     String ecalReadoutName = "EcalHits";
@@ -51,6 +55,11 @@
             throw new RuntimeException("The parameter ecalCollectionName was not set!");
         }
     }
+    
+    @Override
+    public void detectorChanged(Detector detector) {
+    	this.detector = detector;
+    }
 
     @Override
     public void process(EventHeader event) {
@@ -77,7 +86,8 @@
     }
 
     private CalorimeterHit HitDtoA(RawCalorimeterHit hit) {
-        return new HPSCalorimeterHit(DtoA(hit.getAmplitude(), hit.getCellID()), period * hit.getTimeStamp() + dt, hit.getCellID(), 0);
+    	HPSCalorimeterHit h = new HPSCalorimeterHit(DtoA(hit.getAmplitude(), hit.getCellID()), period * hit.getTimeStamp() + dt, hit.getCellID(), 0);
+    	return h;
     }
 
 //    private RawCalorimeterHit HitAtoD(CalorimeterHit hit) {

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalEdepToTriggerConverterDriver.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalEdepToTriggerConverterDriver.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalEdepToTriggerConverterDriver.java	Mon Nov  3 02:54:53 2014
@@ -3,12 +3,18 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.EcalConditions;
+
+//import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalChannelConstants;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
 import org.hps.util.RandomGaussian;
 import org.lcsim.event.CalorimeterHit;
 import org.lcsim.event.EventHeader;
 import org.lcsim.geometry.Detector;
 import org.lcsim.util.Driver;
+
 
 /**
  *
@@ -16,22 +22,26 @@
  * phansson Exp $
  */
 public class EcalEdepToTriggerConverterDriver extends Driver {
-
-    private String ecalReadoutName = "EcalHits";
+	
+    private EcalConditions ecalConditions = null;
+    
+    private static final boolean isBadChannelLoaded = true;
+	
+    private final String ecalReadoutName = "EcalHits";
     private String inputCollection = "EcalHits";
     private String readoutCollection = "EcalCalHits";
     private String triggerCollection = "EcalTriggerHits";
     private boolean applyBadCrystalMap = true;
     private double tp = 14.0;
-    private double readoutPeriod = 4.0;
-    private int readoutThreshold = 50;
-    private int triggerThreshold = 80;
+    private final double readoutPeriod = 4.0;
+    private final int readoutThreshold = 50;
+    private final int triggerThreshold = 80;
     private int truncateScale = 128;
-    private double pulseIntegral = tp * Math.E / readoutPeriod;
-    private double gainScale = 1.0; //gain miscalibration factor
+    private final double pulseIntegral = tp * Math.E / readoutPeriod;
+    private final double gainScale = 1.0; //gain miscalibration factor
     private double _gain = -1.0; //constant gain, activated if >0
     private boolean addNoise = false;
-    private double pePerMeV = 2.0; //photoelectrons per MeV, used to calculate noise
+    private final double pePerMeV = 2.0; //photoelectrons per MeV, used to calculate noise
 
     public EcalEdepToTriggerConverterDriver() {
     }
@@ -77,10 +87,19 @@
 
     @Override
     public void detectorChanged(Detector detector) {
+    	
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+                
+        System.out.println("You are now using the database conditions for EcalEdepToTriggerConverterDriver.");
     }
 
     public boolean isBadCrystal(CalorimeterHit hit) {
-        return EcalConditions.badChannelsLoaded() ? EcalConditions.isBadChannel(hit.getCellID()) : false;
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(hit.getCellID());
+    	
+        return isBadChannelLoaded ? channelData.isBadChannel() : false;
     }
 
     @Override
@@ -141,7 +160,8 @@
 
         int truncatedIntegral = (int) Math.floor(triggerIntegral / truncateScale);
         if (truncatedIntegral > 0) {
-            return new HPSCalorimeterHit(truncatedIntegral, hit.getTime(), hit.getCellID(), 0);
+        	HPSCalorimeterHit h = new HPSCalorimeterHit(truncatedIntegral, hit.getTime(), hit.getCellID(), 0);
+            return h ;
         }
         return null;
     }
@@ -151,8 +171,12 @@
             return null;
         }
 
+        
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(hit.getCellID());
+        
 //        double integral = hit.getRawEnergy()/ECalUtils.GeV * gainScale;
-        double gain = _gain > 0 ? _gain : EcalConditions.physicalToGain(hit.getCellID());
+        double gain = _gain > 0 ? _gain : channelData.getGain().getGain();
         double integral = amplitude * gain * pulseIntegral * gainScale * ECalUtils.MeV / ECalUtils.GeV;
 
 //        double thresholdCrossingTime = 0 - hit.getTime();
@@ -176,19 +200,23 @@
 //        System.out.format("dumb: %f, full: %f\n",hit.getRawEnergy() * 1000.0,readoutIntegral * HPSEcalConditions.physicalToGain(id));
 
 //        System.out.format("readout: %f %f\n", amplitude, integral);
-        CalorimeterHit h = new HPSCalorimeterHit(integral, hit.getTime(), hit.getCellID(), 0);
+        HPSCalorimeterHit h = new HPSCalorimeterHit(integral, hit.getTime(), hit.getCellID(), 0);
         return h;
     }
 
     private double hitAmplitude(CalorimeterHit hit) {
         double energyAmplitude = hit.getRawEnergy();
+        
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(hit.getCellID());
+        
         if (addNoise) {
             //add preamp noise and photoelectron Poisson noise in quadrature
-            double noise = Math.sqrt(Math.pow(EcalConditions.physicalToNoise(hit.getCellID()) * EcalConditions.physicalToGain(hit.getCellID()) * ECalUtils.MeV, 2) + hit.getRawEnergy() * ECalUtils.MeV / pePerMeV);
+            double noise = Math.sqrt(Math.pow(channelData.getCalibration().getNoise() * channelData.getGain().getGain() * ECalUtils.MeV, 2) + hit.getRawEnergy() * ECalUtils.MeV / pePerMeV);
             energyAmplitude += RandomGaussian.getGaussian(0, noise);
         }
 
-        double gain = _gain > 0 ? _gain : EcalConditions.physicalToGain(hit.getCellID());
+        double gain = _gain > 0 ? _gain : channelData.getGain().getGain();
 //        System.out.format("amplitude: %f %f %f %f\n", hit.getRawEnergy(), energyAmplitude, gain, (energyAmplitude / ECalUtils.MeV) / (gain * pulseIntegral));
         return (energyAmplitude / ECalUtils.MeV) / (gain * pulseIntegral);
     }
@@ -207,4 +235,13 @@
             }
         }
     }
+    
+    /** 
+     * Convert physical ID to gain value.
+     * @param cellID (long)
+     * @return channel constants (EcalChannelConstants)
+     */
+    private EcalChannelConstants findChannel(long cellID) {
+        return ecalConditions.getChannelConstants(ecalConditions.getChannelCollection().findGeometric(cellID));
+    }
 }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverter.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverter.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverter.java	Mon Nov  3 02:54:53 2014
@@ -1,10 +1,14 @@
 package org.hps.recon.ecal;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalChannelConstants;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
 import org.lcsim.event.CalorimeterHit;
 import org.lcsim.event.RawCalorimeterHit;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.base.BaseRawCalorimeterHit;
+import org.lcsim.geometry.Detector;
 
 /**
  *
@@ -13,12 +17,18 @@
  */
 public class EcalRawConverter {
 
-    private boolean debug = false;
+    private final boolean debug = false;
     private boolean constantGain = false;
     private double gain;
     private boolean use2014Gain = true;
+    
+    //get the database condition manager
+    
+//    Detector detector = DatabaseConditionsManager.getInstance().getDetectorObject();
+    private EcalConditions ecalConditions = null;
 
-    public EcalRawConverter() {
+
+    public EcalRawConverter() {	
     }
 
     public void setGain(double gain) {
@@ -36,7 +46,11 @@
         if (debug) {
             System.out.println("Summing ADC for hit: " + hit.toString());
         }
-        double pedestal = EcalConditions.physicalToPedestal(hit.getCellID());
+        
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(hit.getCellID());
+        
+        double pedestal = channelData.getCalibration().getPedestal();
         short sum = 0;
         short samples[] = hit.getADCValues();
         for (int isample = 0; isample < samples.length; ++isample) {
@@ -52,10 +66,10 @@
         double time = hit.getTime();
         long id = hit.getCellID();
         double rawEnergy = adcToEnergy(sumADC(hit), id);
+        HPSCalorimeterHit h1 = new HPSCalorimeterHit(rawEnergy + 0.0000001, time, id, 0);
 //        double[] pos = hit.getDetectorElement().getGeometry().getPosition().v();
-        CalorimeterHit h = new HPSCalorimeterHit(rawEnergy + 0.0000001, time, id, 0);
         //+0.0000001 is a horrible hack to ensure rawEnergy!=BaseCalorimeterHit.UNSET_CORRECTED_ENERGY
-        return h;
+        return h1;
     }
 
     public CalorimeterHit HitDtoA(RawCalorimeterHit hit, int window, double timeOffset) {
@@ -64,21 +78,25 @@
         }
         double time = hit.getTimeStamp() / 16.0;
         long id = hit.getCellID();
-        double adcSum = hit.getAmplitude() - window * EcalConditions.physicalToPedestal(id);
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(id);
+        double adcSum = hit.getAmplitude() - window * channelData.getCalibration().getPedestal();
         double rawEnergy = adcToEnergy(adcSum, id);
-        CalorimeterHit h = new HPSCalorimeterHit(rawEnergy + 0.0000001, time + timeOffset, id, 0);
+        HPSCalorimeterHit h2 = new HPSCalorimeterHit(rawEnergy + 0.0000001, time + timeOffset, id, 0);
         //+0.0000001 is a horrible hack to ensure rawEnergy!=BaseCalorimeterHit.UNSET_CORRECTED_ENERGY
-        return h;
+        return h2;
     }
 
     public RawCalorimeterHit HitAtoD(CalorimeterHit hit, int window) {
         int time = (int) (Math.round(hit.getTime() / 4.0) * 64.0);
         long id = hit.getCellID();
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(id);
         int amplitude;
         if (constantGain) {
-            amplitude = (int) Math.round((hit.getRawEnergy() / ECalUtils.MeV) / gain + window * EcalConditions.physicalToPedestal(id));
+            amplitude = (int) Math.round((hit.getRawEnergy() / ECalUtils.MeV) / gain + window * channelData.getCalibration().getPedestal());
         } else {
-            amplitude = (int) Math.round((hit.getRawEnergy() / ECalUtils.MeV) / EcalConditions.physicalToGain(id) + window * EcalConditions.physicalToPedestal(id));
+            amplitude = (int) Math.round((hit.getRawEnergy() / ECalUtils.MeV) / channelData.getGain().getGain() + window * channelData.getCalibration().getPedestal());
         }
         RawCalorimeterHit h = new BaseRawCalorimeterHit(id, amplitude, time);
         return h;
@@ -88,17 +106,21 @@
      * return energy (units of GeV) corresponding to the ADC sum and crystal ID
      */
     private double adcToEnergy(double adcSum, long cellID) {
+    	
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(cellID);
+    	
         if (use2014Gain) {
             if (constantGain) {
                 return adcSum * ECalUtils.gainFactor * ECalUtils.ecalReadoutPeriod;
             } else {
-                return EcalConditions.physicalToGain(cellID) * adcSum * ECalUtils.gainFactor * ECalUtils.ecalReadoutPeriod; // should not be used for the moment (2014/02)
+                return channelData.getGain().getGain() * adcSum * ECalUtils.gainFactor * ECalUtils.ecalReadoutPeriod; // should not be used for the moment (2014/02)
             }
         } else {
             if (constantGain) {
                 return gain * adcSum * ECalUtils.MeV;
             } else {
-                return EcalConditions.physicalToGain(cellID) * adcSum * ECalUtils.MeV; //gain is defined as MeV/integrated ADC
+                return channelData.getGain().getGain() * adcSum * ECalUtils.MeV; //gain is defined as MeV/integrated ADC
             }
         }
     }
@@ -115,4 +137,25 @@
      return h;
      }
      */
-}
+    /** 
+     * Must be set when an object EcalRawConverter is created.
+     * @param detector (long)
+     */   
+    void setDetector(Detector detector) {
+    	
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+        
+        System.out.println("You are now using the database conditions for EcalRawConverter.");
+    }
+    
+    /** 
+     * Convert physical ID to gain value.
+     * @param cellID (long)
+     * @return channel constants (EcalChannelConstants)
+     */
+    private EcalChannelConstants findChannel(long cellID) {
+        return ecalConditions.getChannelConstants(ecalConditions.getChannelCollection().findGeometric(cellID));
+    }   
+}

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverterDriver.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverterDriver.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalRawConverterDriver.java	Mon Nov  3 02:54:53 2014
@@ -3,7 +3,10 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalChannelConstants;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
 import org.lcsim.event.CalorimeterHit;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.GenericObject;
@@ -20,15 +23,18 @@
  */
 public class EcalRawConverterDriver extends Driver {
 
-    EcalRawConverter converter = null;
-    String rawCollectionName = "EcalReadoutHits";
-    String ecalReadoutName = "EcalHits";
-    String ecalCollectionName = "EcalCalHits";
-    int integralWindow = 35;
-    boolean debug = false;
-    double threshold = Double.NEGATIVE_INFINITY;
-    boolean applyBadCrystalMap = true;
-    boolean dropBadFADC = false;
+    // To import database conditions
+    private EcalConditions ecalConditions = null;
+
+    private EcalRawConverter converter = null;
+    private String rawCollectionName = "EcalReadoutHits";
+    private final String ecalReadoutName = "EcalHits";
+    private String ecalCollectionName = "EcalCalHits";
+    private int integralWindow = 35;
+    private boolean debug = false;
+    private double threshold = Double.NEGATIVE_INFINITY;
+    private boolean applyBadCrystalMap = true;
+    private boolean dropBadFADC = false;
     private boolean runBackwards = false;
     private boolean useTimestamps = false;
     private boolean useTruthTime = false;
@@ -94,15 +100,34 @@
 
     @Override
     public void detectorChanged(Detector detector) {
-    }
-
-    public static boolean isBadCrystal(CalorimeterHit hit) {
-        return EcalConditions.badChannelsLoaded() ? EcalConditions.isBadChannel(hit.getCellID()) : false;
-    }
-
-    public static boolean isBadFADC(CalorimeterHit hit) {
-        long daqID = EcalConditions.physicalToDaqID(hit.getCellID());
-        return (EcalConditions.getCrate(daqID) == 1 && EcalConditions.getSlot(daqID) == 3);
+
+        // set the detector for the converter
+        converter.setDetector(detector);
+
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+
+        System.out.println("You are now using the database conditions for EcalRawConverterDriver.");
+    }
+
+    /**
+     * @return false if the channel is a good one, true if it is a bad one
+     * @param CalorimeterHit
+     */
+    public boolean isBadCrystal(CalorimeterHit hit) {
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(hit.getCellID());
+
+        return channelData.isBadChannel();
+    }
+
+    /**
+     * @return false if the ADC is a good one, true if it is a bad one
+     * @param CalorimeterHit
+     */
+    public boolean isBadFADC(CalorimeterHit hit) {
+        return (getCrate(hit.getCellID()) == 1 && getSlot(hit.getCellID()) == 3);
     }
 
     private static double getTimestamp(int system, EventHeader event) { //FIXME: copied from org.hps.readout.ecal.ReadoutTimestamp
@@ -136,7 +161,6 @@
             timeOffset += ((t0ECal + 250.0) % 500.0) - 250.0;
         }
 
-
         int flags = 0;
         flags += 1 << LCIOConstants.RCHBIT_TIME; //store hit time
         flags += 1 << LCIOConstants.RCHBIT_LONG; //store hit position; this flag has no effect for RawCalorimeterHits
@@ -150,7 +174,11 @@
 
                 for (RawTrackerHit hit : hits) {
                     CalorimeterHit newHit = converter.HitDtoA(hit);
-                    if (applyBadCrystalMap && isBadCrystal(newHit)) {
+
+                    // Get the channel data.
+                    EcalChannelConstants channelData = findChannel(newHit.getCellID());
+
+                    if (applyBadCrystalMap && channelData.isBadChannel()) {
                         continue;
                     }
                     if (dropBadFADC && isBadFADC(newHit)) {
@@ -170,6 +198,7 @@
                         System.out.format("old hit energy %d\n", hit.getAmplitude());
                     }
                     CalorimeterHit newHit = converter.HitDtoA(hit, integralWindow, timeOffset);
+
                     if (newHit.getRawEnergy() > threshold) {
                         if (applyBadCrystalMap && isBadCrystal(newHit)) {
                             continue;
@@ -206,4 +235,36 @@
             }
         }
     }
+
+    /**
+     * Convert physical ID to gain value.
+     *
+     * @param cellID (long)
+     * @return channel constants (EcalChannelConstants)
+     */
+    private EcalChannelConstants findChannel(long cellID) {
+        return ecalConditions.getChannelConstants(ecalConditions.getChannelCollection().findGeometric(cellID));
+    }
+
+    /**
+     * Return crate number from cellID
+     *
+     * @param cellID (long)
+     * @return Crate number (int)
+     */
+    private int getCrate(long cellID) {
+        // Find the ECAL channel and return the crate number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getCrate();
+    }
+
+    /**
+     * Return slot number from cellID
+     *
+     * @param cellID (long)
+     * @return Slot number (int)
+     */
+    private int getSlot(long cellID) {
+        // Find the ECAL channel and return the slot number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getSlot();
+    }
 }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalReadoutToTriggerConverterDriver.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalReadoutToTriggerConverterDriver.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalReadoutToTriggerConverterDriver.java	Mon Nov  3 02:54:53 2014
@@ -3,7 +3,10 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalChannelConstants;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
 import org.lcsim.event.CalorimeterHit;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.base.BaseRawCalorimeterHit;
@@ -17,20 +20,23 @@
  */
 public class EcalReadoutToTriggerConverterDriver extends Driver {
 
-    String rawCollectionName = "EcalReadoutHits";
-    String ecalReadoutName = "EcalHits";
-    String ecalCollectionName = "EcalCalHits";
-    int integralWindow = 30;
-    boolean debug = false;
-    double threshold = Double.NEGATIVE_INFINITY;
-    boolean applyBadCrystalMap = true;
-    boolean dropBadFADC = false;
-    double tp = 14.0;
-    double readoutPeriod = 4.0;
-    private int readoutThreshold = 50;
-    private int triggerThreshold = 80;
+    // To import database conditions
+    private EcalConditions ecalConditions = null;
+
+    private String rawCollectionName = "EcalReadoutHits";
+    private final String ecalReadoutName = "EcalHits";
+    private String ecalCollectionName = "EcalCalHits";
+    private int integralWindow = 30;
+    private double threshold = Double.NEGATIVE_INFINITY;
+    private boolean applyBadCrystalMap = true;
+    private boolean dropBadFADC = false;
+    private double tp = 14.0;
+    private final double readoutPeriod = 4.0;
+    private final int readoutThreshold = 50;
+    private final int triggerThreshold = 80;
     private double timeShift = 0;
     private int truncateScale = 128;
+    private static final boolean isBadChannelLoaded = true;
 
     public EcalReadoutToTriggerConverterDriver() {
     }
@@ -76,15 +82,23 @@
 
     @Override
     public void detectorChanged(Detector detector) {
+
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+
+        System.out.println("You are now using the database conditions for EcalReadoutToTriggerConverterDriver.");
     }
 
     public boolean isBadCrystal(CalorimeterHit hit) {
-        return EcalConditions.badChannelsLoaded() ? EcalConditions.isBadChannel(hit.getCellID()) : false;
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(hit.getCellID());
+
+        return isBadChannelLoaded ? channelData.isBadChannel() : false;
     }
 
     public boolean isBadFADC(CalorimeterHit hit) {
-        long daqID = EcalConditions.physicalToDaqID(hit.getCellID());
-        return (EcalConditions.getCrate(daqID) == 1 && EcalConditions.getSlot(daqID) == 3);
+        return (getCrate(hit.getCellID()) == 1 && getSlot(hit.getCellID()) == 3);
     }
 
     @Override
@@ -112,8 +126,12 @@
     }
 
     public CalorimeterHit HitDtoA(BaseRawCalorimeterHit hit, int window) {
+
+        // Get the channel data.
+        EcalChannelConstants channelData = findChannel(hit.getCellID());
+
         double integral = tp * Math.E / readoutPeriod;
-        double readoutIntegral = (hit.getAmplitude() - window * EcalConditions.physicalToPedestal(hit.getCellID()));
+        double readoutIntegral = (hit.getAmplitude() - window * channelData.getCalibration().getPedestal());
         double amplitude = readoutIntegral / integral;
 
 //        double time = readoutPeriod * (Math.random() - 1);
@@ -149,7 +167,6 @@
         }
 
 //        System.out.format("%f %f %f\n", readoutIntegral, amplitude, triggerIntegral);
-
         if (hit.getTimeStamp() % 64 != 0) {
             System.out.println("unexpected timestamp " + hit.getTimeStamp());
         }
@@ -168,7 +185,7 @@
         if (truncatedIntegral <= 0) {
             truncatedIntegral = 0;
         }
-        CalorimeterHit h = new HPSCalorimeterHit(truncatedIntegral, hitTime, id, 0);
+        HPSCalorimeterHit h = new HPSCalorimeterHit(truncatedIntegral, hitTime, id, 0);
 //        CalorimeterHit h = new HPSRawCalorimeterHit(triggerIntegral + 0.0000001, hit.getPosition(), hitTime, id, 0);
         //+0.0000001 is a horrible hack to ensure rawEnergy!=BaseCalorimeterHit.UNSET_CORRECTED_ENERGY
         return h;
@@ -188,4 +205,36 @@
             }
         }
     }
+
+    /**
+     * Convert physical ID to gain value.
+     *
+     * @param cellID (long)
+     * @return channel constants (EcalChannelConstants)
+     */
+    private EcalChannelConstants findChannel(long cellID) {
+        return ecalConditions.getChannelConstants(ecalConditions.getChannelCollection().findGeometric(cellID));
+    }
+
+    /**
+     * Return crate number from cellID
+     *
+     * @param cellID (long)
+     * @return Crate number (int)
+     */
+    private int getCrate(long cellID) {
+        // Find the ECAL channel and return the crate number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getCrate();
+    }
+
+    /**
+     * Return slot number from cellID
+     *
+     * @param cellID (long)
+     * @return Slot number (int)
+     */
+    private int getSlot(long cellID) {
+        // Find the ECAL channel and return the slot number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getSlot();
+    }
 }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalTriggerFilterDriver.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalTriggerFilterDriver.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalTriggerFilterDriver.java	Mon Nov  3 02:54:53 2014
@@ -4,8 +4,12 @@
 import java.util.List;
 import java.util.Queue;
 import java.util.concurrent.ArrayBlockingQueue;
+import org.hps.conditions.TableConstants;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.ecal.EcalChannel.GeometryId;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
+import org.lcsim.detector.identifier.IIdentifierHelper;
 import org.lcsim.event.CalorimeterHit;
 import org.lcsim.event.EventHeader;
 import org.lcsim.geometry.Detector;
@@ -13,16 +17,23 @@
 
 /**
  * Changes ECal hit IDs to match what the test run trigger sees.
+ *
  * @version $Id: HPSEcalRawConverterDriver.java,v 1.2 2012/05/03 00:17:54
  * phansson Exp $
  */
 public class EcalTriggerFilterDriver extends Driver {
 
-    private String ecalReadoutName = "EcalHits";
+    // To import database conditions
+    private EcalConditions ecalConditions = null;
+
+    private IIdentifierHelper helper = null;
+    private int systemId;
+
+    private final String ecalReadoutName = "EcalHits";
     private String inputCollection = "EcalReadoutHits";
     private String outputCollection = "EcalCalHits";
-    private int topDelay = 0;
-    private int bottomDelay = 5;
+    private final int topDelay = 0;
+    private final int bottomDelay = 5;
     private Queue<List<CalorimeterHit>> topHitsQueue = null;
     private Queue<List<CalorimeterHit>> bottomHitsQueue = null;
 
@@ -55,6 +66,16 @@
 
     @Override
     public void detectorChanged(Detector detector) {
+        // ID helper.
+        helper = detector.getSubdetector("Ecal").getDetectorElement().getIdentifierHelper();
+
+        systemId = detector.getSubdetector("Ecal").getSystemID();
+
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+
+        System.out.println("You are now using the database conditions for EcalTriggerFilterDriver.");
     }
 
     @Override
@@ -69,7 +90,8 @@
             for (CalorimeterHit hit : hits) {
                 CalorimeterHit newHit = filterHit(hit);
                 if (newHit != null) {
-                    if (hit.getIdentifierFieldValue("iy") > 0) { //should really be checking newHit, but it doesn't have metadata yet
+                    newHit.setMetaData(hit.getMetaData());
+                    if (newHit.getIdentifierFieldValue("iy") > 0) {
                         topHits.add(newHit);
                     } else {
                         bottomHits.add(newHit);
@@ -85,15 +107,20 @@
         }
     }
 
+    /**
+     * This method takes input hits and makes new hits with different ix
+     *
+     * @param CalorimeterHit hit
+     * @return new HPSCalorimeterHit
+     */
     private CalorimeterHit filterHit(CalorimeterHit hit) {
         int ix = hit.getIdentifierFieldValue("ix");
         int iy = hit.getIdentifierFieldValue("iy");
-        long daqID = EcalConditions.physicalToDaqID(hit.getCellID());
-        int crate = EcalConditions.getCrate(daqID);
-        short slot = EcalConditions.getSlot(daqID);
-        short channel = EcalConditions.getChannel(daqID);
+        int crate = getCrate(hit.getCellID());
+        int slot = getSlot(hit.getCellID());
 
-        int delay = iy>0?topDelay:bottomDelay;
+        int delay = iy > 0 ? topDelay : bottomDelay;
+
         // no triggers from crate 1, slot 3 
         if (crate == 1 && slot == 3) {
             return null;
@@ -103,8 +130,37 @@
         if (ix > 0 && iy > 0) {
             ix = 24 - ix;
         }
-        long newID = EcalConditions.makePhysicalID(ix, iy);
+
+        int values[] = {systemId, ix, iy};
+        GeometryId geomId = new GeometryId(helper, values);
+        // Creating the new channel from cell id, ix and iy, then reading its ID       
+        long newID = geomId.encode();
+
         //make new hit; set position to null so it gets recalculated
-        return new HPSCalorimeterHit(hit.getRawEnergy(), hit.getTime()+delay*4, newID, hit.getType());
+        HPSCalorimeterHit h = new HPSCalorimeterHit(hit.getRawEnergy(), hit.getTime() + delay * 4, newID, hit.getType());
+        return h;
     }
+
+    /**
+     * Return crate number from cellID
+     *
+     * @param cellID (long)
+     * @return Crate number (int)
+     */
+    private int getCrate(long cellID) {
+        // Find the ECAL channel and return the crate number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getCrate();
+    }
+
+    /**
+     * Return slot number from cellID
+     *
+     * @param cellID (long)
+     * @return Slot number (int)
+     */
+    private int getSlot(long cellID) {
+        // Find the ECAL channel and return the slot number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getSlot();
+    }
+
 }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/FADCConverterDriver.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/FADCConverterDriver.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/FADCConverterDriver.java	Mon Nov  3 02:54:53 2014
@@ -3,7 +3,10 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalChannelConstants;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.base.BaseRawCalorimeterHit;
@@ -16,13 +19,13 @@
  */
 public class FADCConverterDriver extends Driver {
 
-    String rawCollectionName = "EcalReadoutHits";
-    String ecalReadoutName = "EcalHits";
-    String ecalCollectionName = "EcalIntegralHits";
-    boolean debug = false;
-    int numSamplesBefore = 5;
-    int numSamplesAfter = 30;
-    int threshold = 50;
+    private EcalConditions ecalConditions = null;
+    private String rawCollectionName = "EcalReadoutHits";
+    private String ecalReadoutName = "EcalHits";
+    private String ecalCollectionName = "EcalIntegralHits";
+    private int numSamplesBefore = 5;
+    private int numSamplesAfter = 30;
+    private int threshold = 50;
 
     public FADCConverterDriver() {
     }
@@ -60,12 +63,16 @@
 
     @Override
     public void detectorChanged(Detector detector) {
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+
+        System.out.println("You are now using the database conditions for FADCConverterDriver");
     }
 
     @Override
     public void process(EventHeader event) {
         ArrayList<BaseRawCalorimeterHit> readoutHits = new ArrayList<BaseRawCalorimeterHit>();
-        ArrayList<BaseRawCalorimeterHit> triggerHits = new ArrayList<BaseRawCalorimeterHit>();
 
         // Get the list of ECal hits.
         if (event.hasCollection(RawTrackerHit.class, rawCollectionName)) {
@@ -74,8 +81,12 @@
             for (RawTrackerHit hit : hits) {
                 short[] window = hit.getADCValues();
                 long id = hit.getCellID();
+
+                // Get the channel data.
+                EcalChannelConstants channelData = findChannel(id);
+
                 //do DAQ readout
-                double crystalThreshold = EcalConditions.physicalToPedestal(id) + threshold;
+                double crystalThreshold = channelData.getCalibration().getPedestal() + threshold;
                 int adcSum = 0;
                 int pointerOffset = 0;
                 int numSamplesToRead = 0;
@@ -85,7 +96,7 @@
                         adcSum += window[i - pointerOffset];
                         numSamplesToRead--;
                         if (numSamplesToRead == 0) {
-                            readoutHits.add(new BaseRawCalorimeterHit(id, adcSum, 64*thresholdCrossing));
+                            readoutHits.add(new BaseRawCalorimeterHit(id, adcSum, 64 * thresholdCrossing));
                         }
                     } else if ((i == 0 || window[i - 1] <= crystalThreshold) && window[i] > crystalThreshold) {
                         thresholdCrossing = i;
@@ -100,4 +111,15 @@
         int flags = 0;
         event.put(ecalCollectionName, readoutHits, BaseRawCalorimeterHit.class, flags, ecalReadoutName);
     }
+
+    /**
+     * Convert physical ID to gain value.
+     *
+     * @param cellID (long)
+     * @return channel constants (EcalChannelConstants)
+     */
+    private EcalChannelConstants findChannel(long cellID) {
+        return ecalConditions.getChannelConstants(ecalConditions.getChannelCollection().findGeometric(cellID));
+    }
+
 }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/GTPEcalClusterer.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/GTPEcalClusterer.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/GTPEcalClusterer.java	Mon Nov  3 02:54:53 2014
@@ -32,6 +32,9 @@
  * @author Sho Uemura
  */
 public class GTPEcalClusterer extends Driver {
+	Detector detector = null;
+	
+	
     /**
      * <b>calorimeter</b><br/><br/>
      * <code>private HPSEcal3 <b>calorimeter</b></code><br/><br/>
@@ -112,6 +115,9 @@
      */
     @Override
     public void detectorChanged(Detector detector) {
+    	
+    	this.detector = detector;
+    	
         // Get the calorimeter object.
         calorimeter = (HPSEcal3) detector.getSubdetector(ecalName);
         
@@ -153,7 +159,8 @@
             
             // Store the crystals that are part of this potential cluster, 
             // starting with the cluster seed candidate.
-            HPSEcalCluster cluster = new HPSEcalCluster(currentHit);
+            HPSEcalCluster cluster = new HPSEcalCluster();
+            cluster.setSeedHit(currentHit);
             cluster.addHit(currentHit);
             
             // Get the set of neighbors for this hit.

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSCalorimeterHit.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSCalorimeterHit.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSCalorimeterHit.java	Mon Nov  3 02:54:53 2014
@@ -4,7 +4,6 @@
 
 import java.util.Comparator;
 
-import org.hps.conditions.deprecated.EcalConditions;
 import org.lcsim.detector.IDetectorElement;
 import org.lcsim.detector.IDetectorElementContainer;
 import org.lcsim.event.CalorimeterHit;
@@ -27,8 +26,48 @@
      * @param time     Time of energy deposition
      * @param id       Cell ID
      * @param type     Type
+     * WARNING: setDetector(detector° must be called after initialization
      */
     public HPSCalorimeterHit(double energy, double time, long id, int type) {
+        this.rawEnergy = energy;
+        this.correctedEnergy = energy;
+        this.time = time;
+        this.id = id;
+        this.type = type;
+    }
+    
+//    /**
+//     * Fully qualified constructor that sets rawEnergy
+//     *
+//     * @param energy   Raw energy for this cell
+//     * @param position Global Cartesian coordinate for this cell
+//     * @param time     Time of energy deposition
+//     * @param id       Cell ID
+//     * @param type     Type
+//     * WARNING: setDetector(detector) must be called after initialization
+//     */
+//    public HPSCalorimeterHit(CalorimeterHit hit) {
+//        this.rawEnergy = hit.getRawEnergy();
+////      if (position != null) {
+////          this.positionVec = new BasicHep3Vector(position);
+////      } else {
+////          positionVec = null;
+////      }
+//      this.time = hit.getTime();
+//      this.id = hit.getCellID();
+//      this.type = hit.getType();
+//    }
+    
+    /**
+     * Fully qualified constructor that sets rawEnergy
+     *
+     * @param energy   Raw energy for this cell
+     * @param position Global Cartesian coordinate for this cell
+     * @param time     Time of energy deposition
+     * @param id       Cell ID
+     * @param type     Type
+     */
+    public void setParameters(double energy, double time, long id, int type) {
         this.rawEnergy = energy;
 //        if (position != null) {
 //            this.positionVec = new BasicHep3Vector(position);
@@ -44,7 +83,7 @@
     public IDetectorElement getDetectorElement() {
         if (de == null) {
 //            findDetectorElementByPosition();
-            IDetectorElementContainer detectorElements = EcalConditions.getSubdetector().getDetectorElement().findDetectorElement(getIdentifier());
+            IDetectorElementContainer detectorElements = getSubdetector().getDetectorElement().findDetectorElement(getIdentifier());
             if (detectorElements.size() != 1) {
                 throw new RuntimeException("Expected exactly one DetectorElement matching ID " + getIdentifier() + ", got " + detectorElements.size());
             } else {
@@ -57,12 +96,18 @@
 
     @Override
     public double[] getPosition() {
-        return getPositionVec().v();
+        if (positionVec == null) {
+            positionVec = this.getDetectorElement().getGeometry().getPosition();
+        }
+        return super.getPosition();
     }
 
     @Override
     public Hep3Vector getPositionVec() {
-        return this.getDetectorElement().getGeometry().getPosition();
+        if (positionVec == null) {
+            positionVec = this.getDetectorElement().getGeometry().getPosition();
+        }
+        return super.getPositionVec();
     }
 
     static class TimeComparator implements Comparator<CalorimeterHit> {

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSEcalCluster.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSEcalCluster.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSEcalCluster.java	Mon Nov  3 02:54:53 2014
@@ -3,7 +3,9 @@
 import hep.physics.vec.BasicHep3Vector;
 import hep.physics.vec.Hep3Vector;
 import hep.physics.vec.VecOp;
+
 import java.util.List;
+
 import org.lcsim.detector.IGeometryInfo;
 import org.lcsim.detector.solids.Trd;
 import org.lcsim.event.CalorimeterHit;
@@ -20,23 +22,41 @@
 
     private CalorimeterHit seedHit = null;
     private long cellID;
-    
-    static final double eCriticalW = 800.0*ECalUtils.MeV/(74+1);
+
+    static final double eCriticalW = 800.0 * ECalUtils.MeV / (74 + 1);
     static final double radLenW = 8.8; //mm
     double[] electronPosAtDepth = new double[3];
     private boolean needsElectronPosCalculation = true;
     double[] photonPosAtDepth = new double[3];
     private boolean needsPhotonPosCalculation = true;
-    
+
+    /**
+     * @param cellID (long)
+     */
+    public HPSEcalCluster() {
+    }
+
+    /**
+     *
+     * @param cellID (long)
+     */
     public HPSEcalCluster(Long cellID) {
         this.cellID = cellID;
     }
 
-    public HPSEcalCluster(CalorimeterHit seedHit) {
+    /**
+     *
+     * @param CalorimeterHit
+     */
+    public void setSeedHit(CalorimeterHit seedHit) {
         this.seedHit = seedHit;
         this.cellID = seedHit.getCellID();
     }
 
+    /**
+     *
+     * @return CalorimeterHit
+     */
     public CalorimeterHit getSeedHit() {
         if (seedHit == null) {
             CalorimeterHit hit = hits.get(0);
@@ -44,16 +64,20 @@
                 throw new RuntimeException("HPSEcalCluster has no hits");
             }
             seedHit = new HPSCalorimeterHit(0.0, 0.0, cellID, hit.getType());
+//            seedHit.setDetector(detector);
             seedHit.setMetaData(hit.getMetaData());
         }
         return seedHit;
     }
-    
+
     /**
-     * Find highest-energy hit in a cluster. For clusters made by GTPEcalClusterer, HPSEcalCluster.getSeedHit(cluster) should be equivalent to cluster.getSeedHit().
-     * Since this method doesn't require that the cluster be an HPSEcalCluster, it will work on clusters read from LCIO.
+     * Find highest-energy hit in a cluster. For clusters made by
+     * GTPEcalClusterer, HPSEcalCluster.getSeedHit(cluster) should be equivalent
+     * to cluster.getSeedHit(). Since this method doesn't require that the
+     * cluster be an HPSEcalCluster, it will work on clusters read from LCIO.
+     *
      * @param cluster
-     * @return
+     * @return CalorimeterHit
      */
     public static CalorimeterHit getSeedHit(Cluster cluster) {
         CalorimeterHit seedHit = null;
@@ -64,7 +88,7 @@
         }
         return seedHit;
     }
-    
+
 //    public double[] getPosition() {
 //        return getSeedHit().getPosition();
 //    }
@@ -74,45 +98,40 @@
         //Electron by default!?
         return this.getPositionAtShowerMax(true);
     }
-        
+
     public double[] getPositionAtShowerMax(boolean isElectron) {
-        if( isElectron) {
-            if(needsElectronPosCalculation) {
+        if (isElectron) {
+            if (needsElectronPosCalculation) {
                 this.calcPositionAtShowerMax(true);
             }
             return this.electronPosAtDepth;
-        }
-        else {
-            if(needsPhotonPosCalculation) {
+        } else {
+            if (needsPhotonPosCalculation) {
                 this.calcPositionAtShowerMax(false);
             }
             return this.photonPosAtDepth;
-        }  
-    }
-        
+        }
+    }
+
     public void calcPositionAtShowerMax(boolean isElectron) {
         double E = this.getEnergy();
-        double y = E/eCriticalW;
+        double y = E / eCriticalW;
         double Cj = isElectron ? -0.5 : 0.5;
         double tmax = Math.log(y) + Cj; //Maximum of dE/dt profile in units of rad. len. 
-        double dmax = tmax*radLenW; //mm
-        if(isElectron) {
-            electronPosAtDepth =  calculatePositionAtDepth(dmax);
+        double dmax = tmax * radLenW; //mm
+        if (isElectron) {
+            electronPosAtDepth = calculatePositionAtDepth(dmax);
         } else {
-            photonPosAtDepth =  calculatePositionAtDepth(dmax);
-        }
-            
-    }
-    
-    
-    
-    public double[] calculatePositionAtDepth(double dmax) 
-    {
+            photonPosAtDepth = calculatePositionAtDepth(dmax);
+        }
+
+    }
+
+    public double[] calculatePositionAtDepth(double dmax) {
         return this.calculatePositionAtDepth(this.getCalorimeterHits(), dmax);
-    }    
-    
-    public double[] calculatePositionAtDepth(List<CalorimeterHit> hits, double dmax)
-    {
+    }
+
+    public double[] calculatePositionAtDepth(List<CalorimeterHit> hits, double dmax) {
         //copy from package org.lcsim.recon.cluster.util.TensorClusterPropertyCalculator;
 
         double positionErrorLocal[] = new double[6];
@@ -121,17 +140,16 @@
         double positionLocal[] = new double[3];
         double ithetaLocal;
         double iphiLocal;
-        
-        
+
         double[] mm_NE = new double[3];
         double[] mm_CE = new double[3];
         double[][] mm_PA = new double[3][3];
-        for(int i=0;i<3;++i)
-        {
+        for (int i = 0; i < 3; ++i) {
             mm_NE[i] = 0.;
             mm_CE[i] = 0.;
-            for(int j=0;j<3;++j)
-            {mm_PA[i][j]= 0.;}
+            for (int j = 0; j < 3; ++j) {
+                mm_PA[i][j] = 0.;
+            }
         }
         double Etot = 0.0;
         double Exx = 0.0;
@@ -154,8 +172,7 @@
         double M = 0.0;
         double Det = 0.0;
         int nhits = hits.size();
-        for(int i=0;i<hits.size();i++)
-        {
+        for (int i = 0; i < hits.size(); i++) {
             CalorimeterHit hit = hits.get(i);
             //	CalorimeterIDDecoder decoder = hit.getDecoder();
             //	decoder.setID(hit.getCellID());
@@ -166,52 +183,50 @@
             //double[] pos = hit.getPosition();
             //Find position at shower max
             IGeometryInfo geom = hit.getDetectorElement().getGeometry();
-            double[] pos = geom.transformLocalToGlobal(VecOp.add(geom.transformGlobalToLocal(geom.getPosition()),(Hep3Vector)new BasicHep3Vector(0,0,dmax-1*((Trd)geom.getLogicalVolume().getSolid()).getZHalfLength()))).v();
-                        
+            double[] pos = geom.transformLocalToGlobal(VecOp.add(geom.transformGlobalToLocal(geom.getPosition()), (Hep3Vector) new BasicHep3Vector(0, 0, dmax - 1 * ((Trd) geom.getLogicalVolume().getSolid()).getZHalfLength()))).v();
+
 //            System.out.println("global pos " + global_pos.toString());
 //            System.out.println("local pos " + local_pos.toString());
 //            System.out.println("local pos tmax " + local_pos_tmax.toString());
 //            System.out.println("global pos tmax " + global_pos_tmax.toString());
 //            
             //pos = global_pos_tmax.v();
-            
             double E = hit.getCorrectedEnergy();
             Etot += E;
-            CEx += E*pos[0];
-            CEy += E*pos[1];
-            CEz += E*pos[2];
-            Exx += E*(pos[1]*pos[1] + pos[2]*pos[2]);
-            Eyy += E*(pos[0]*pos[0] + pos[2]*pos[2]);
-            Ezz += E*(pos[1]*pos[1] + pos[0]*pos[0]);
-            Exy -= E*pos[0]*pos[1];
-            Eyz -= E*pos[1]*pos[2];
-            Exz -= E*pos[0]*pos[2];
-        }
-        CEx = CEx/Etot;
-        CEy = CEy/Etot;
-        CEz = CEz/Etot;
-        double CErSq = CEx*CEx + CEy*CEy + CEz*CEz;
+            CEx += E * pos[0];
+            CEy += E * pos[1];
+            CEz += E * pos[2];
+            Exx += E * (pos[1] * pos[1] + pos[2] * pos[2]);
+            Eyy += E * (pos[0] * pos[0] + pos[2] * pos[2]);
+            Ezz += E * (pos[1] * pos[1] + pos[0] * pos[0]);
+            Exy -= E * pos[0] * pos[1];
+            Eyz -= E * pos[1] * pos[2];
+            Exz -= E * pos[0] * pos[2];
+        }
+        CEx = CEx / Etot;
+        CEy = CEy / Etot;
+        CEz = CEz / Etot;
+        double CErSq = CEx * CEx + CEy * CEy + CEz * CEz;
         CEr = Math.sqrt(CErSq);
         // now go to center of energy coords.
-        if (nhits > 3 )
-        {
-            Exx = Exx - Etot*(CErSq - CEx*CEx);
-            Eyy = Eyy - Etot*(CErSq - CEy*CEy);
-            Ezz = Ezz - Etot*(CErSq - CEz*CEz);
-            Exy = Exy + Etot*CEx*CEy;
-            Eyz = Eyz + Etot*CEy*CEz;
-            Exz = Exz + Etot*CEz*CEx;
+        if (nhits > 3) {
+            Exx = Exx - Etot * (CErSq - CEx * CEx);
+            Eyy = Eyy - Etot * (CErSq - CEy * CEy);
+            Ezz = Ezz - Etot * (CErSq - CEz * CEz);
+            Exy = Exy + Etot * CEx * CEy;
+            Eyz = Eyz + Etot * CEy * CEz;
+            Exz = Exz + Etot * CEz * CEx;
 
             //
             Tr = Exx + Eyy + Ezz;
-            double Dxx = Eyy*Ezz - Eyz*Eyz;
-            double Dyy = Ezz*Exx - Exz*Exz;
-            double Dzz = Exx*Eyy - Exy*Exy;
+            double Dxx = Eyy * Ezz - Eyz * Eyz;
+            double Dyy = Ezz * Exx - Exz * Exz;
+            double Dzz = Exx * Eyy - Exy * Exy;
             M = Dxx + Dyy + Dzz;
-            double Dxy = Exy*Ezz - Exz*Eyz;
-            double Dxz = Exy*Eyz - Exz*Eyy;
-            Det = Exx*Dxx - Exy*Dxy + Exz*Dxz;
-            double xt = Tr*Tr - 3*M;
+            double Dxy = Exy * Ezz - Exz * Eyz;
+            double Dxz = Exy * Eyz - Exz * Eyy;
+            Det = Exx * Dxx - Exy * Dxy + Exz * Dxz;
+            double xt = Tr * Tr - 3 * M;
             double sqrtxt = Math.sqrt(xt);
             // eqn to solve for eigenvalues is x**3 - x**2*Tr + x*M - Det = 0
             // crosses y axis at -Det and inflection points are
@@ -219,180 +234,165 @@
             double mE1 = 0.;
             double mE2 = 0.;
             double mE3 = 0.;
-            double a = (3*M - Tr*Tr)/3.;
-            double b = (-2*Tr*Tr*Tr + 9*Tr*M -27*Det)/27.;
-            double test = b*b/4. + a*a*a/27.;
-            if(test >= 0.01)
-            {
+            double a = (3 * M - Tr * Tr) / 3.;
+            double b = (-2 * Tr * Tr * Tr + 9 * Tr * M - 27 * Det) / 27.;
+            double test = b * b / 4. + a * a * a / 27.;
+            if (test >= 0.01) {
                 //System.out.println("AbstractCluster: Only 1 real root!!!");
                 //System.out.println("  nhits = " + nhits + "\n");
                 //System.out.println(" a,b,test = " + a + " " + b + " " + test + "\n");
-            }
-            else
-            {
+            } else {
                 double temp;
-                if(test >= 0.)temp = 1.;
-                else temp = Math.sqrt(b*b*27./(-a*a*a*4.));
-                if(b > 0.)temp = -temp;
+                if (test >= 0.) {
+                    temp = 1.;
+                } else {
+                    temp = Math.sqrt(b * b * 27. / (-a * a * a * 4.));
+                }
+                if (b > 0.) {
+                    temp = -temp;
+                }
                 double phi = Math.acos(temp);
-                double temp1 = 2.*Math.sqrt(-a/3.);
-                mE1 = Tr/3. + 2.*Math.sqrt(-a/3.)*Math.cos(phi/3.);
-                mE2 = Tr/3. + 2.*Math.sqrt(-a/3.)*Math.cos(phi/3. + 2.*Math.PI/3.);
-                mE3 = Tr/3. + 2.*Math.sqrt(-a/3.)*Math.cos(phi/3. + 4.*Math.PI/3.);
-            }
-            if(mE1 < mE2)
-            {
-                if(mE1 < mE3)
-                {
+                double temp1 = 2. * Math.sqrt(-a / 3.);
+                mE1 = Tr / 3. + 2. * Math.sqrt(-a / 3.) * Math.cos(phi / 3.);
+                mE2 = Tr / 3. + 2. * Math.sqrt(-a / 3.) * Math.cos(phi / 3. + 2. * Math.PI / 3.);
+                mE3 = Tr / 3. + 2. * Math.sqrt(-a / 3.) * Math.cos(phi / 3. + 4. * Math.PI / 3.);
+            }
+            if (mE1 < mE2) {
+                if (mE1 < mE3) {
                     E1 = mE1;
-                    if(mE2 < mE3)
-                    {
+                    if (mE2 < mE3) {
                         E2 = mE2;
                         E3 = mE3;
-                    }
-                    else
-                    {
+                    } else {
                         E2 = mE3;
                         E3 = mE2;
                     }
-                }
-                else
-                {
+                } else {
                     E1 = mE3;
                     E2 = mE1;
                     E3 = mE2;
                 }
-            }
-            else
-            {
-                if(mE2 < mE3)
-                {
+            } else {
+                if (mE2 < mE3) {
                     E1 = mE2;
-                    if(mE1 < mE3)
-                    {
+                    if (mE1 < mE3) {
                         E2 = mE1;
                         E3 = mE3;
-                    }
-                    else
-                    {
+                    } else {
                         E2 = mE3;
                         E3 = mE1;
                     }
-                }
-                else
-                {
+                } else {
                     E1 = mE3;
                     E2 = mE2;
                     E3 = mE1;
                 }
             }
 
-            NE1 = E1/Etot;
-            NE2 = E2/Etot;
-            NE3 = E3/Etot;
+            NE1 = E1 / Etot;
+            NE2 = E2 / Etot;
+            NE3 = E3 / Etot;
             double[] EV = new double[3];
             EV[0] = E1;
             EV[1] = E2;
             EV[2] = E3;
             // Now calculate principal axes
-	    // For eigenvalue EV, the axis is (nx, ny, nz) where:
-	    //    (Exx - EV)nx + (Exy)ny + (Exz)nz = 0
-	    //    (Eyx)nx + (Eyy - EV)ny + (Eyz)nz = 0
-	    //    (Ezx)nx + (Ezy)ny + (Ezz - EV)nz = 0
-	    // Setting nx = 1, we have:
-	    //    (Exx - EV) + (Exy)ny + (Exz)nz = 0
-	    //    (Eyx) + (Eyy - EV)ny + (Eyz)nz = 0
-	    //    (Ezx) + (Ezy)ny + (Ezz - EV)nz = 0
-	    // and so
-	    //    (Exy)ny = EV - Exx - (Exz)nz  =>  ny = (EV - Exx - Exz*nz)/Exy
-	    // What if Exy = 0? Then provided Eyz is non-zero we can write:
-	    //    (Ezx) + (Ezy)ny + (Ezz - EV)nz = 0
-	    //    ny = (Exz - (Ezz-EV)*nz)/Eyz
-	    // What if Exy = 0 and Eyz = 0 but (Eyy - EV) is non-zero?
-	    //    (Eyy - EV)ny + (Eyz)nz = 0
-	    //    ny = -(Eyz*nz)/(Eyy-EV)
-
-	    // In the pathological case where Exz = Eyz = Ezz = 0:
-	    //    (Exx - EV)nx + (Exy)ny = 0  =>  ny/nx = -(Exx-EV)/Exy
-	    //    (Eyx)nx + (Eyy - EV)ny = 0  =>  ny/nx = -Eyx/(Eyy-EV)
-	    //    (EV)nz = 0
-	    // so
-	    //     -ny/nx = (EV-Exx)/Exy = Eyx/(EV-Eyy)
-	    // But watch out for order! Recalculate eigenvalues for this pathological case.
-	    //     (EV-Exx)(EV-Eyy) = Eyx*Exy
-	    //     EV^2 - EV(Exx+Eyy) + Exx*Eyy - Eyx*Exy = 0
-	    // 
-	    // In another pathological case, Exz = Exy = 0:
-	    //    (Exx - EV)nx = 0
-	    //    (Eyy - EV)ny + (Eyz)nz = 0 => ny/nz = -(Eyz)/(Eyy-EV)
-	    //    (Ezy)ny + (Ezz - EV)nz = 0 => ny/nz = -(Ezz-EV)/(Ezy)
-	    // so we cannot set nx = 1. Instead, write:
-	    //    -ny/nz = (Eyz)/(Eyy-EV) = (Ezz-EV)/(Ezy)
-	    // Then
-	    //    (Eyz)(Ezy) = (Eyy-EV)(Ezz-EV)
-	    //    (Eyz)^2 = (Eyy)(Ezz) - (Eyy)(EV) - (Ezz)(EV) + (EV)^2
-	    //    EV^2 - EV(Eyy+Ezz) + Eyy*Ezz - Eyz*Eyz = 0
-
-	    // Handle pathological case
-	    if (Exz == 0.0 && Eyz == 0.0) {
-		// Recompute eigenvectors.
-		EV[0] = 0.5*(Exx+Eyy) + 0.5*Math.sqrt((Exx+Eyy)*(Exx+Eyy) + 4.0*Exy*Exy);
-		EV[1] = 0.5*(Exx+Eyy) - 0.5*Math.sqrt((Exx+Eyy)*(Exx+Eyy) + 4.0*Exy*Exy);
-		EV[2] = 0.0;
-		for( int i = 0 ; i < 2 ; i++ ) {
-		    double nx_over_ny = Exy / (Exx-EV[i]);
-		    double nx_unnormalized = nx_over_ny;
-		    double ny_unnormalized = 1.0;
-		    double norm = Math.sqrt(nx_unnormalized*nx_unnormalized + ny_unnormalized*ny_unnormalized);
-		    mm_PA[i][0] = ny_unnormalized/norm;
-		    mm_PA[i][1] = nx_unnormalized/norm;
-		    mm_PA[i][2] = 0.0;
-		}
-		// ... and now set third eigenvector to the z direction:
-		mm_PA[2][0] = 0.0;
-		mm_PA[2][1] = 0.0;
-		mm_PA[2][2] = 1.0;
-	    } else if (Exz == 0.0 && Exy == 0.0) {
-		// Another pathological case
-		EV[0] = 0.5*(Eyy+Ezz) + 0.5*Math.sqrt((Eyy+Ezz)*(Eyy+Ezz) + 4.0*Eyz*Eyz);
-		EV[1] = 0.5*(Eyy+Ezz) - 0.5*Math.sqrt((Eyy+Ezz)*(Eyy+Ezz) + 4.0*Eyz*Eyz);
-		EV[2] = 0.0;
-		for( int i = 0 ; i < 2 ; i++ ) {
-		    double ny_over_nz = Eyz / (Eyy-EV[i]);
-		    double ny_unnormalized = ny_over_nz;
-		    double nz_unnormalized = 1.0;
-		    double norm = Math.sqrt(ny_unnormalized*ny_unnormalized + nz_unnormalized*nz_unnormalized);
-		    mm_PA[i][0] = nz_unnormalized/norm;
-		    mm_PA[i][1] = ny_unnormalized/norm;
-		    mm_PA[i][2] = 0.0;
-		}
-		mm_PA[2][0] = 0.0;
-		mm_PA[2][1] = 0.0;
-		mm_PA[2][2] = 1.0;
-	    } else {
-		for( int i = 0 ; i < 3 ; i++ )
-		    {
-			double[] C = new double[3];
-			C[0] = 1.0;
-			C[2] = (Exy*Exy + (Eyy - EV[i])*(EV[i] - Exx))/
-			    ((Eyy - EV[i])*Exz - Eyz*Exy);
-			C[1] = (EV[i] - Exx - Exz*C[2])/Exy;
-			if (Exy == 0.0) {
-			    // Recompute
-			    if (Eyz != 0.0) {
-				// ny = (Exz - (Ezz-EV)*nz)/Eyz
-				C[1] = (Exz - (Ezz-EV[i])*C[2])/Eyz;
-			    } else {
-				// ny = -(Eyz*nz)/(Eyy-EV)
-				C[1] = -(Eyz*C[2])/(Eyy-EV[i]);
-			    }
-			}
-			double norm = Math.sqrt(C[0]*C[0] + C[1]*C[1] + C[2]*C[2]);
-			mm_PA[i][0] = C[0]/norm;
-			mm_PA[i][1] = C[1]/norm;
-			mm_PA[i][2] = C[2]/norm;
-		    }
-	    }
+            // For eigenvalue EV, the axis is (nx, ny, nz) where:
+            //    (Exx - EV)nx + (Exy)ny + (Exz)nz = 0
+            //    (Eyx)nx + (Eyy - EV)ny + (Eyz)nz = 0
+            //    (Ezx)nx + (Ezy)ny + (Ezz - EV)nz = 0
+            // Setting nx = 1, we have:
+            //    (Exx - EV) + (Exy)ny + (Exz)nz = 0
+            //    (Eyx) + (Eyy - EV)ny + (Eyz)nz = 0
+            //    (Ezx) + (Ezy)ny + (Ezz - EV)nz = 0
+            // and so
+            //    (Exy)ny = EV - Exx - (Exz)nz  =>  ny = (EV - Exx - Exz*nz)/Exy
+            // What if Exy = 0? Then provided Eyz is non-zero we can write:
+            //    (Ezx) + (Ezy)ny + (Ezz - EV)nz = 0
+            //    ny = (Exz - (Ezz-EV)*nz)/Eyz
+            // What if Exy = 0 and Eyz = 0 but (Eyy - EV) is non-zero?
+            //    (Eyy - EV)ny + (Eyz)nz = 0
+            //    ny = -(Eyz*nz)/(Eyy-EV)
+
+            // In the pathological case where Exz = Eyz = Ezz = 0:
+            //    (Exx - EV)nx + (Exy)ny = 0  =>  ny/nx = -(Exx-EV)/Exy
+            //    (Eyx)nx + (Eyy - EV)ny = 0  =>  ny/nx = -Eyx/(Eyy-EV)
+            //    (EV)nz = 0
+            // so
+            //     -ny/nx = (EV-Exx)/Exy = Eyx/(EV-Eyy)
+            // But watch out for order! Recalculate eigenvalues for this pathological case.
+            //     (EV-Exx)(EV-Eyy) = Eyx*Exy
+            //     EV^2 - EV(Exx+Eyy) + Exx*Eyy - Eyx*Exy = 0
+            // 
+            // In another pathological case, Exz = Exy = 0:
+            //    (Exx - EV)nx = 0
+            //    (Eyy - EV)ny + (Eyz)nz = 0 => ny/nz = -(Eyz)/(Eyy-EV)
+            //    (Ezy)ny + (Ezz - EV)nz = 0 => ny/nz = -(Ezz-EV)/(Ezy)
+            // so we cannot set nx = 1. Instead, write:
+            //    -ny/nz = (Eyz)/(Eyy-EV) = (Ezz-EV)/(Ezy)
+            // Then
+            //    (Eyz)(Ezy) = (Eyy-EV)(Ezz-EV)
+            //    (Eyz)^2 = (Eyy)(Ezz) - (Eyy)(EV) - (Ezz)(EV) + (EV)^2
+            //    EV^2 - EV(Eyy+Ezz) + Eyy*Ezz - Eyz*Eyz = 0
+            // Handle pathological case
+            if (Exz == 0.0 && Eyz == 0.0) {
+                // Recompute eigenvectors.
+                EV[0] = 0.5 * (Exx + Eyy) + 0.5 * Math.sqrt((Exx + Eyy) * (Exx + Eyy) + 4.0 * Exy * Exy);
+                EV[1] = 0.5 * (Exx + Eyy) - 0.5 * Math.sqrt((Exx + Eyy) * (Exx + Eyy) + 4.0 * Exy * Exy);
+                EV[2] = 0.0;
+                for (int i = 0; i < 2; i++) {
+                    double nx_over_ny = Exy / (Exx - EV[i]);
+                    double nx_unnormalized = nx_over_ny;
+                    double ny_unnormalized = 1.0;
+                    double norm = Math.sqrt(nx_unnormalized * nx_unnormalized + ny_unnormalized * ny_unnormalized);
+                    mm_PA[i][0] = ny_unnormalized / norm;
+                    mm_PA[i][1] = nx_unnormalized / norm;
+                    mm_PA[i][2] = 0.0;
+                }
+                // ... and now set third eigenvector to the z direction:
+                mm_PA[2][0] = 0.0;
+                mm_PA[2][1] = 0.0;
+                mm_PA[2][2] = 1.0;
+            } else if (Exz == 0.0 && Exy == 0.0) {
+                // Another pathological case
+                EV[0] = 0.5 * (Eyy + Ezz) + 0.5 * Math.sqrt((Eyy + Ezz) * (Eyy + Ezz) + 4.0 * Eyz * Eyz);
+                EV[1] = 0.5 * (Eyy + Ezz) - 0.5 * Math.sqrt((Eyy + Ezz) * (Eyy + Ezz) + 4.0 * Eyz * Eyz);
+                EV[2] = 0.0;
+                for (int i = 0; i < 2; i++) {
+                    double ny_over_nz = Eyz / (Eyy - EV[i]);
+                    double ny_unnormalized = ny_over_nz;
+                    double nz_unnormalized = 1.0;
+                    double norm = Math.sqrt(ny_unnormalized * ny_unnormalized + nz_unnormalized * nz_unnormalized);
+                    mm_PA[i][0] = nz_unnormalized / norm;
+                    mm_PA[i][1] = ny_unnormalized / norm;
+                    mm_PA[i][2] = 0.0;
+                }
+                mm_PA[2][0] = 0.0;
+                mm_PA[2][1] = 0.0;
+                mm_PA[2][2] = 1.0;
+            } else {
+                for (int i = 0; i < 3; i++) {
+                    double[] C = new double[3];
+                    C[0] = 1.0;
+                    C[2] = (Exy * Exy + (Eyy - EV[i]) * (EV[i] - Exx))
+                            / ((Eyy - EV[i]) * Exz - Eyz * Exy);
+                    C[1] = (EV[i] - Exx - Exz * C[2]) / Exy;
+                    if (Exy == 0.0) {
+                        // Recompute
+                        if (Eyz != 0.0) {
+                            // ny = (Exz - (Ezz-EV)*nz)/Eyz
+                            C[1] = (Exz - (Ezz - EV[i]) * C[2]) / Eyz;
+                        } else {
+                            // ny = -(Eyz*nz)/(Eyy-EV)
+                            C[1] = -(Eyz * C[2]) / (Eyy - EV[i]);
+                        }
+                    }
+                    double norm = Math.sqrt(C[0] * C[0] + C[1] * C[1] + C[2] * C[2]);
+                    mm_PA[i][0] = C[0] / norm;
+                    mm_PA[i][1] = C[1] / norm;
+                    mm_PA[i][2] = C[2] / norm;
+                }
+            }
         }
         mm_NE[0] = NE1;
         mm_NE[1] = NE2;
@@ -400,40 +400,34 @@
         mm_CE[0] = CEx;
         mm_CE[1] = CEy;
         mm_CE[2] = CEz;
-        for(int i=0;i<6;i++)
-        {
+        for (int i = 0; i < 6; i++) {
             positionErrorLocal[i] = 0.;
             directionErrorLocal[i] = 0.;
             shapeParametersLocal[i] = 0.;
         }
-        for(int i=0;i<3;i++)
-        {
+        for (int i = 0; i < 3; i++) {
             positionLocal[i] = mm_CE[i];
             shapeParametersLocal[i] = mm_NE[i];
         }
-        if(nhits > 3)
-        {
-            double dr = Math.sqrt(  (position[0]+mm_PA[0][0])*(position[0]+mm_PA[0][0]) +
-                    (position[1]+mm_PA[0][1])*(position[1]+mm_PA[0][1]) +
-                    (position[2]+mm_PA[0][2])*(position[2]+mm_PA[0][2]) ) -
-                    Math.sqrt(	(position[0])*(position[0]) +
-                    (position[1])*(position[1]) +
-                    (position[2])*(position[2]) ) ;
+        if (nhits > 3) {
+            double dr = Math.sqrt((position[0] + mm_PA[0][0]) * (position[0] + mm_PA[0][0])
+                    + (position[1] + mm_PA[0][1]) * (position[1] + mm_PA[0][1])
+                    + (position[2] + mm_PA[0][2]) * (position[2] + mm_PA[0][2]))
+                    - Math.sqrt((position[0]) * (position[0])
+                            + (position[1]) * (position[1])
+                            + (position[2]) * (position[2]));
             double sign = 1.;
-            if(dr < 0.)sign = -1.;
-            itheta = Math.acos(sign*mm_PA[0][2]);
-            iphi = Math.atan2(sign*mm_PA[0][1],sign*mm_PA[0][0]);
-        }
-        else
-        {
+            if (dr < 0.) {
+                sign = -1.;
+            }
+            itheta = Math.acos(sign * mm_PA[0][2]);
+            iphi = Math.atan2(sign * mm_PA[0][1], sign * mm_PA[0][0]);
+        } else {
             itheta = 999.;
             iphi = 999.;
         }
-    
+
         return positionLocal;
     }
-    
-    
-    
-    
+
 }

Modified: java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSRawCalorimeterHit.java
 =============================================================================
--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSRawCalorimeterHit.java	(original)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/HPSRawCalorimeterHit.java	Mon Nov  3 02:54:53 2014
@@ -53,6 +53,7 @@
 
 	public static class TimeComparator implements Comparator<RawCalorimeterHit> {
 
+        @Override
 		public int compare(RawCalorimeterHit o1, RawCalorimeterHit o2) {
 			return o1.getTimeStamp() - o2.getTimeStamp();
 		}

Modified: java/trunk/evio/src/main/java/org/hps/evio/ECalEvioReader.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/ECalEvioReader.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/ECalEvioReader.java	Mon Nov  3 02:54:53 2014
@@ -3,18 +3,27 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.DatabaseConditionsManager;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalChannel;
+import org.hps.conditions.ecal.EcalChannel.DaqId;
+import org.hps.conditions.ecal.EcalChannel.GeometryId;
+import org.hps.conditions.ecal.EcalConditions;
+import org.lcsim.conditions.ConditionsManager;
+import org.lcsim.detector.identifier.IIdentifierHelper;
+import org.lcsim.detector.identifier.Identifier;
+//import org.hps.conditions.deprecated.EcalConditions;
 import org.jlab.coda.jevio.BaseStructure;
 import org.jlab.coda.jevio.BaseStructureHeader;
 import org.jlab.coda.jevio.CompositeData;
 import org.jlab.coda.jevio.EvioEvent;
 import org.jlab.coda.jevio.EvioException;
-import org.lcsim.detector.identifier.Identifier;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.SimTrackerHit;
 import org.lcsim.event.base.BaseRawCalorimeterHit;
 import org.lcsim.event.base.BaseRawTrackerHit;
+import org.lcsim.geometry.Subdetector;
 import org.lcsim.lcio.LCIOConstants;
 
 /**
@@ -25,11 +34,32 @@
 public class ECalEvioReader extends EvioReader {
     // Names of subdetectors.
 
-    private int bankTag = EventConstants.ECAL_PULSE_INTEGRAL_BANK_TAG;
+    private int bankTag = 0;
     private Class hitClass = BaseRawCalorimeterHit.class;
+
+    // FIXME: Hard-coded detector names.
+    private static final String readoutName = "EcalHits";
+    private static final String subdetectorName = "Ecal";
+//    private Detector detector;
+    private final Subdetector subDetector;
+
+    private static EcalConditions ecalConditions = null;
+    private static IIdentifierHelper helper = null;
 
     public ECalEvioReader() {
         hitCollectionName = "EcalReadoutHits";
+
+        subDetector =  DatabaseConditionsManager.getInstance().getDetectorObject().getSubdetector(subdetectorName);
+
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+
+        helper = subDetector.getDetectorElement().getIdentifierHelper();
+
+        System.out.println("You are now using the database conditions for ECalEvioReader.java");
+        // ID helper.
+//        helper = detector.getSubdetector("Ecal").getDetectorElement().getIdentifierHelper();
     }
 
     @Override
@@ -91,7 +121,7 @@
                 }
             }
         }
-        String readoutName = EcalConditions.getSubdetector().getReadout().getName();
+//        String readoutName = ;
         lcsimEvent.put(hitCollectionName, hits, hitClass, flags, readoutName);
 //        for (Object hit : hits) {
 //            System.out.println(((RawTrackerHit) hit).getIDDecoder().getIDDescription().toString());
@@ -126,7 +156,11 @@
                 if (debug) {
                     System.out.println("  channel=" + channel + "; nSamples=" + nSamples);
                 }
-                Long id = EcalConditions.daqToPhysicalID(crate, slot, channel);
+
+                Long id = daqToGeometryId(crate, slot, channel);
+//                Long id = EcalConditions.daqToPhysicalID(crate, slot, channel);
+
+                System.out.println("The long id is: " + id);
 
                 short[] adcValues = new short[nSamples];
                 for (int i = 0; i < nSamples; i++) {
@@ -135,11 +169,30 @@
                 if (id == null) {
                     System.out.printf("Crate %d, slot %d, channel %d not found in map\n", crate, slot, channel);
                 } else {
-                    hits.add(new BaseRawTrackerHit(0, id, adcValues, new ArrayList<SimTrackerHit>(), EcalConditions.getSubdetector().getDetectorElement().findDetectorElement(new Identifier(id)).get(0)));
+                    hits.add(new BaseRawTrackerHit(
+                            0,
+                            id,
+                            adcValues,
+                            new ArrayList<SimTrackerHit>(),
+                            subDetector
+                            .getDetectorElement().findDetectorElement(new Identifier(id)).get(0)));
                 }
             }
         }
         return hits;
+    }
+
+    private Long daqToGeometryId(int crate, short slot, short channel) {
+        DaqId daqId = new DaqId(new int[]{crate, slot, channel});
+        EcalChannel ecalChannel = ecalConditions.getChannelCollection().findChannel(daqId);
+        if (ecalChannel == null) {
+            return null;
+        }
+        int ix = ecalChannel.getX();
+        int iy = ecalChannel.getY();
+        GeometryId geometryId = new GeometryId(helper, new int[]{subDetector.getSystemID(), ix, iy});
+        Long id = geometryId.encode();
+        return id;
     }
 
     private List<BaseRawTrackerHit> makePulseHits(CompositeData cdata, int crate) {
@@ -168,7 +221,7 @@
                 if (debug) {
                     System.out.println("  channel=" + channel + "; npulses=" + npulses);
                 }
-                Long id = EcalConditions.daqToPhysicalID(crate, slot, channel);
+                Long id = daqToGeometryId(crate, slot, channel);
                 for (int k = 0; k < npulses; k++) {
                     short pulseNum = cdata.getByte();
                     int sampleCount = cdata.getNValue();
@@ -179,7 +232,7 @@
                     if (id == null) {
                         System.out.printf("Crate %d, slot %d, channel %d not found in map\n", crate, slot, channel);
                     } else {
-                        hits.add(new BaseRawTrackerHit(pulseNum, id, adcValues, new ArrayList<SimTrackerHit>(), EcalConditions.getSubdetector().getDetectorElement().findDetectorElement(new Identifier(id)).get(0)));
+                        hits.add(new BaseRawTrackerHit(pulseNum, id, adcValues, new ArrayList<SimTrackerHit>(), subDetector.getDetectorElement().findDetectorElement(new Identifier(id)).get(0)));
                     }
                 }
             }
@@ -213,7 +266,7 @@
                 if (debug) {
                     System.out.println("  channel=" + channel + "; npulses=" + npulses);
                 }
-                Long id = EcalConditions.daqToPhysicalID(crate, slot, channel);
+                Long id = daqToGeometryId(crate, slot, channel);
 
                 for (int k = 0; k < npulses; k++) {
                     short pulseTime = cdata.getShort();

Modified: java/trunk/evio/src/main/java/org/hps/evio/ECalHitWriter.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/ECalHitWriter.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/ECalHitWriter.java	Mon Nov  3 02:54:53 2014
@@ -5,17 +5,21 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.EcalConditions;
+import org.hps.conditions.TableConstants;
+import org.hps.conditions.ecal.EcalConditions;
 import org.jlab.coda.jevio.BaseStructure;
 import org.jlab.coda.jevio.CompositeData;
 import org.jlab.coda.jevio.DataType;
 import org.jlab.coda.jevio.EventBuilder;
 import org.jlab.coda.jevio.EvioBank;
 import org.jlab.coda.jevio.EvioException;
+import org.lcsim.conditions.ConditionsManager;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawCalorimeterHit;
 import org.lcsim.event.RawTrackerHit;
+import org.lcsim.geometry.Detector;
 import org.lcsim.geometry.IDDecoder;
+import org.lcsim.geometry.Subdetector;
 import org.lcsim.lcio.LCIOConstants;
 
 import static org.hps.evio.EventConstants.*;
@@ -30,7 +34,29 @@
     private String hitCollectionName = "EcalReadoutHits";
     private int mode = EventConstants.ECAL_PULSE_INTEGRAL_MODE;
 
+    // FIXME: Hard-coded detector names.
+    private static final String subdetectorName = "Ecal";
+    private Subdetector subDetector;
+
+    private static EcalConditions ecalConditions = null;
+
     public ECalHitWriter() {
+    }
+
+    /**
+     * Must be set when an object EcalHitWriter is created.
+     *
+     * @param detector (long)
+     */
+    void setDetector(Detector detector) {
+
+        subDetector = detector.getSubdetector(subdetectorName);
+
+        // ECAL combined conditions object.
+        ecalConditions = ConditionsManager.defaultInstance()
+                .getCachedConditions(EcalConditions.class, TableConstants.ECAL_CONDITIONS).getCachedData();
+
+        System.out.println("You are now using the database conditions for ECalHitWriter.java");
     }
 
     public void setHitCollectionName(String hitCollectionName) {
@@ -86,8 +112,8 @@
         List<Object> topHits = new ArrayList<Object>();
         List<Object> bottomHits = new ArrayList<Object>();
         for (Object hit : rawCalorimeterHits) {
-            Long daqID = EcalConditions.physicalToDaqID(getCellID(hit));
-            int crate = EcalConditions.getCrate(daqID);
+//            Long daqID = EcalConditions.physicalToDaqID(getCellID(hit));
+            int crate = getCrate(getCellID(hit));
             if (crate == ECAL_BOTTOM_BANK_TAG) {
                 bottomHits.add(hit);
             } else {
@@ -163,7 +189,7 @@
         }
 
         // Get the ID decoder.
-        IDDecoder dec = EcalConditions.getSubdetector().getIDDecoder();
+        IDDecoder dec = subDetector.getIDDecoder();
 
         // Make a hit map; allow for multiple hits in a crystal.
         Map<Long, List<RawCalorimeterHit>> hitMap = new HashMap<Long, List<RawCalorimeterHit>>();
@@ -182,9 +208,9 @@
             dec.setID(id);
 //			System.out.println(dec.getIDDescription());
 //			System.out.printf("ix = %d, iy = %d\n", dec.getValue("ix"), dec.getValue("iy"));
-            Long daqID = EcalConditions.physicalToDaqID(id);
+//            Long daqID = EcalConditions.physicalToDaqID(id);
 //			System.out.printf("physicalID %d, daqID %d\n", id, daqID);
-            int slot = EcalConditions.getSlot(daqID);
+            int slot = getSlot(id);
             if (slotMap.get(slot) == null) {
                 slotMap.put(slot, new ArrayList<Long>());
             }
@@ -205,7 +231,7 @@
             data.addN(nhits); // number of channels
             for (Long id : hitIDs) {
                 dec.setID(id);
-                int channel = EcalConditions.getChannel(EcalConditions.physicalToDaqID(id));
+                int channel = getChannel(id);
                 data.addUchar((byte) channel); // channel #
                 List<RawCalorimeterHit> channelHits = hitMap.get(id);
                 data.addN(channelHits.size()); // number of pulses
@@ -216,7 +242,7 @@
             }
         }
         // New bank for this slot.
-        EvioBank cdataBank = new EvioBank(EventConstants.ECAL_PULSE_BANK_TAG, DataType.COMPOSITE, 0);
+        EvioBank cdataBank = new EvioBank(EventConstants.ECAL_PULSE_INTEGRAL_BANK_TAG, DataType.COMPOSITE, 0);
         List<CompositeData> cdataList = new ArrayList<CompositeData>();
 
         // Add CompositeData to bank.
@@ -236,7 +262,7 @@
         }
 
         // Get the ID decoder.
-        IDDecoder dec = EcalConditions.getSubdetector().getIDDecoder();
+        IDDecoder dec = subDetector.getIDDecoder();
 
         // Make a hit map; allow for multiple hits in a crystal.
         Map<Long, List<RawTrackerHit>> hitMap = new HashMap<Long, List<RawTrackerHit>>();
@@ -255,9 +281,9 @@
             dec.setID(id);
 //			System.out.println(dec.getIDDescription());
 //			System.out.printf("ix = %d, iy = %d\n", dec.getValue("ix"), dec.getValue("iy"));
-            Long daqID = EcalConditions.physicalToDaqID(id);
+//            Long daqID = EcalConditions.physicalToDaqID(id);
 //			System.out.printf("physicalID %d, daqID %d\n", id, daqID);
-            int slot = EcalConditions.getSlot(daqID);
+            int slot = getSlot(id);
             if (slotMap.get(slot) == null) {
                 slotMap.put(slot, new ArrayList<Long>());
             }
@@ -278,7 +304,7 @@
             data.addN(nhits); // number of channels
             for (Long id : hitIDs) {
                 dec.setID(id);
-                int channel = EcalConditions.getChannel(EcalConditions.physicalToDaqID(id));
+                int channel = getChannel(id);
                 data.addUchar((byte) channel); // channel #
                 List<RawTrackerHit> channelHits = hitMap.get(id);
                 data.addN(channelHits.size()); // number of pulses
@@ -313,7 +339,7 @@
         }
 
         // Get the ID decoder.
-        IDDecoder dec = EcalConditions.getSubdetector().getIDDecoder();
+        IDDecoder dec = subDetector.getIDDecoder();
 
         // Make a hit map; allow for multiple hits in a crystal.
         Map<Long, RawTrackerHit> hitMap = new HashMap<Long, RawTrackerHit>();
@@ -328,9 +354,9 @@
             dec.setID(id);
 //			System.out.println(dec.getIDDescription());
 //			System.out.printf("ix = %d, iy = %d\n", dec.getValue("ix"), dec.getValue("iy"));
-            Long daqID = EcalConditions.physicalToDaqID(id);
+//            Long daqID = EcalConditions.physicalToDaqID(id);
 //			System.out.printf("physicalID %d, daqID %d\n", id, daqID);
-            int slot = EcalConditions.getSlot(daqID);
+            int slot = getSlot(id);
             if (slotMap.get(slot) == null) {
                 slotMap.put(slot, new ArrayList<Long>());
             }
@@ -346,7 +372,6 @@
 
             // New bank for this slot.
 //            EvioBank slotBank = new EvioBank(EventConstants.ECAL_WINDOW_BANK_TAG, DataType.COMPOSITE, slot);
-
             data.addUchar((byte) slot); // slot #
             data.addUint(0); // trigger #
             data.addUlong(0); // timestamp    		
@@ -355,7 +380,7 @@
             data.addN(nhits); // number of channels
             for (Long id : hitIDs) {
                 dec.setID(id);
-                int channel = EcalConditions.getChannel(EcalConditions.physicalToDaqID(id));
+                int channel = getChannel(id);
                 data.addUchar((byte) channel); // channel #
                 RawTrackerHit hit = hitMap.get(id);
                 data.addN(hit.getADCValues().length); // number of samples
@@ -382,7 +407,7 @@
 
     @Override
     public void writeData(EventHeader event, EventHeader toEvent) {
-        String readoutName = EcalConditions.getSubdetector().getReadout().getName();
+        String readoutName = ((org.lcsim.geometry.compact.Subdetector) subDetector).getReadout().getName();
         switch (mode) {
             case EventConstants.ECAL_WINDOW_MODE:
             case EventConstants.ECAL_PULSE_MODE:
@@ -401,4 +426,37 @@
                 break;
         }
     }
+
+    /**
+     * Return crate number from cellID
+     *
+     * @param cellID (long)
+     * @return Crate number (int)
+     */
+    private int getCrate(long cellID) {
+        // Find the ECAL channel and return the crate number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getCrate();
+    }
+
+    /**
+     * Return slot number from cellID
+     *
+     * @param cellID (long)
+     * @return Slot number (int)
+     */
+    private int getSlot(long cellID) {
+        // Find the ECAL channel and return the slot number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getSlot();
+    }
+
+    /**
+     * Return channel number from cellID
+     *
+     * @param cellID (long)
+     * @return Slot number (int)
+     */
+    private int getChannel(long cellID) {
+        // Find the ECAL channel and return the slot number.
+        return ecalConditions.getChannelCollection().findGeometric(cellID).getChannel();
+    }
 }

Modified: java/trunk/evio/src/main/java/org/hps/evio/LCSimTestRunEventBuilder.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/LCSimTestRunEventBuilder.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/LCSimTestRunEventBuilder.java	Mon Nov  3 02:54:53 2014
@@ -6,7 +6,7 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.EcalConditions;
+//import org.hps.conditions.deprecated.EcalConditions;
 import org.hps.readout.ecal.TriggerData;
 import org.jlab.coda.jevio.BaseStructure;
 import org.jlab.coda.jevio.EvioEvent;
@@ -45,7 +45,7 @@
         // Make a dummy event to setup the conditions system.
         EventHeader dummyEvent = new BaseLCSimEvent(0, 0, detectorName);
         detector = dummyEvent.getDetector();
-        EcalConditions.loadDaqMap(detector, "Ecal");
+//        EcalConditions.loadDaqMap(detector, "Ecal");
     }
 
     @Override

Modified: java/trunk/evio/src/main/java/org/hps/evio/SVTEvioReader.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/SVTEvioReader.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/SVTEvioReader.java	Mon Nov  3 02:54:53 2014
@@ -1,40 +1,55 @@
 package org.hps.evio;
 
-//--- java ---//
 import java.util.ArrayList;
+import java.util.HashMap;
 import java.util.List;
-
+import java.util.Map;
+
+import org.jlab.coda.jevio.BaseStructure;
+import org.jlab.coda.jevio.EvioEvent;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
+import org.lcsim.detector.tracker.silicon.HpsTestRunSiSensor;
+import org.lcsim.event.EventHeader;
+import org.lcsim.event.GenericObject;
+import org.lcsim.event.RawTrackerHit;
+import org.lcsim.event.base.BaseRawTrackerHit;
+import org.lcsim.geometry.compact.Subdetector;
+import org.lcsim.lcio.LCIOUtil;
+import org.hps.conditions.DatabaseConditionsManager;
 import org.hps.conditions.deprecated.HPSSVTConstants;
-import org.hps.conditions.deprecated.SvtUtils;
+import org.hps.conditions.svt.TestRunSvtConditions;
+import org.hps.conditions.svt.TestRunSvtDetectorSetup;
+//import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.readout.svt.FpgaData;
 import org.hps.readout.svt.SVTData;
-//--- Coda ---//
-import org.jlab.coda.jevio.BaseStructure;
-import org.jlab.coda.jevio.EvioEvent;
-//--- org.lcsim ---//
-import org.lcsim.detector.tracker.silicon.SiSensor;
-import org.lcsim.event.EventHeader;
-import org.lcsim.event.GenericObject;
-//--- hps-java ---//
-import org.lcsim.event.RawTrackerHit;
-import org.lcsim.event.base.BaseRawTrackerHit;
 import org.hps.util.Pair;
-import org.lcsim.lcio.LCIOUtil;
-
-
-//--- Constants ---//
+
+import static org.hps.conditions.TableConstants.SVT_CONDITIONS;
 import static org.hps.evio.EventConstants.SVT_BANK_TAG;
 
 /**
  *
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: SVTEvioReader.java,v 1.10 2013/07/27 01:52:49 omoreno Exp $
  */
+// TODO: Update this class so it works correctly with the database conditions system
 public class SVTEvioReader extends EvioReader {
 
-    String fpgaDataCollectionName = "FPGAData";
+    
+	// A Map from FPGA and Hybrid daq pair to the corresponding sensor
+    private Map<Pair<Integer /* FPGA */, Integer /* Hybrid */>,
+    			HpsSiSensor /* Sensor*/> daqPairToSensor = new HashMap<Pair<Integer, Integer>, HpsSiSensor>();
+	
+    
+    // Subdetector name
+    private static final String subdetectorName = "Tracker";
+   
+    // Flag indicating whether the DAQ map has been setup 
+    boolean isDaqMapSetup = false; 
+   
+    // Collection names
+	String fpgaDataCollectionName = "FPGAData";
     String readoutName = "TrackerHits";
-
+    
     /**
      *
      */
@@ -46,6 +61,24 @@
     public void setReadoutName(String readoutName) {
         this.readoutName = readoutName;
     }
+    
+    // TODO: Move this class to the DaqMapping class instead
+    private void setupDaqMap(Subdetector subdetector){
+        DatabaseConditionsManager manager = DatabaseConditionsManager.getInstance();
+        
+        TestRunSvtConditions conditions = manager.getCachedConditions(TestRunSvtConditions.class, SVT_CONDITIONS).getCachedData();
+        TestRunSvtDetectorSetup loader = new TestRunSvtDetectorSetup();
+        loader.load(subdetector, conditions); 
+    	
+        List<HpsSiSensor> sensors = subdetector.getDetectorElement().findDescendants(HpsSiSensor.class);
+    	
+        for(HpsSiSensor sensor : sensors){
+        	Pair<Integer, Integer> daqPair 
+    			= new Pair<Integer, Integer>(((HpsTestRunSiSensor) sensor).getFpgaID(), ((HpsTestRunSiSensor) sensor).getHybridID());
+        	daqPairToSensor.put(daqPair, sensor);
+        }
+        isDaqMapSetup = true; 
+    }
 
     /**
      *
@@ -53,10 +86,15 @@
     @Override
     public boolean makeHits(EvioEvent event, EventHeader lcsimEvent) {
         // Create DAQ Maps
-        if (!SvtUtils.getInstance().isSetup()) {
-            SvtUtils.getInstance().setup(lcsimEvent.getDetector());
-        }
-
+        //===> if (!SvtUtils.getInstance().isSetup()) {
+        //===>     SvtUtils.getInstance().setup(lcsimEvent.getDetector());
+        //===> }
+
+    	// TODO: This needs to be done in a smarter way
+    	if(!isDaqMapSetup){
+    		setupDaqMap(lcsimEvent.getDetector().getSubdetector(subdetectorName));
+    	}
+    	
         // Create a list to hold the temperatures 
         List<FpgaData> fpgaDataCollection = new ArrayList<FpgaData>();
 
@@ -149,14 +187,18 @@
         return foundBank;
     }
 
-    private static RawTrackerHit makeHit(int[] data) {
+    private RawTrackerHit makeHit(int[] data) {
         int hitTime = 0;
         Pair<Integer, Integer> daqPair = new Pair<Integer, Integer>(SVTData.getFPGAAddress(data), SVTData.getHybridNumber(data));
-        SiSensor sensor = SvtUtils.getInstance().getSensor(daqPair);
+        HpsSiSensor sensor = daqPairToSensor.get(daqPair);
+        //===> SiSensor sensor = SvtUtils.getInstance().getSensor(daqPair);
 
         int sensorChannel = SVTData.getSensorChannel(data);
-        long cell_id = SvtUtils.makeCellID(sensor, sensorChannel);
+        long cell_id = sensor.makeChannelID(sensorChannel);
+        //===> long cell_id = SvtUtils.makeCellID(sensor, sensorChannel);
+        
 
         return new BaseRawTrackerHit(hitTime, cell_id, SVTData.getAllSamples(data), null, sensor);
     }
+    
 }

Modified: java/trunk/evio/src/main/java/org/hps/evio/SVTHitWriter.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/SVTHitWriter.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/SVTHitWriter.java	Mon Nov  3 02:54:53 2014
@@ -5,19 +5,22 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.HPSSVTConstants;
-import org.hps.conditions.deprecated.SvtUtils;
-import org.hps.readout.svt.FpgaData;
-import org.hps.readout.svt.SVTData;
 import org.jlab.coda.jevio.DataType;
 import org.jlab.coda.jevio.EventBuilder;
 import org.jlab.coda.jevio.EvioBank;
 import org.jlab.coda.jevio.EvioException;
+import org.lcsim.detector.tracker.silicon.HpsTestRunSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.LCRelation;
 import org.lcsim.event.RawTrackerHit;
+import org.lcsim.geometry.Subdetector;
 import org.lcsim.lcio.LCIOConstants;
+import org.hps.conditions.deprecated.HPSSVTConstants;
+//===> import org.hps.conditions.deprecated.SvtUtils;
+import org.hps.readout.svt.FpgaData;
+import org.hps.readout.svt.SVTData;
 
 import static org.hps.evio.EventConstants.SVT_BANK_NUMBER;
 import static org.hps.evio.EventConstants.SVT_BANK_TAG;
@@ -25,16 +28,23 @@
 /**
  *
  * @author Sho Uemura <[log in to unmask]>
- * @version $Id: SVTHitWriter.java,v 1.5 2013/05/22 18:45:33 jeremy Exp $
  */
+// TODO: Update this class so it works correctly with the database conditions system
 public class SVTHitWriter implements HitWriter {
 
     boolean debug = false;
+    
+    // Subdetector name
+    private static final String subdetectorName = "Tracker";
+
+    // Collection names
     private String hitCollectionName = "SVTRawTrackerHits";
     private String fpgaDataCollectionName = "FPGAData";
     private String relationCollectionName = "SVTTrueHitRelations";
-    String readoutName = "TrackerHits";
-
+    private String readoutName = "TrackerHits";
+    
+    List<Integer> fpgaNumbers = new ArrayList<Integer>(); 
+    
     public SVTHitWriter() {
     }
 
@@ -46,15 +56,24 @@
     public boolean hasData(EventHeader event) {
         return event.hasCollection(RawTrackerHit.class, hitCollectionName);
     }
-
+    
     //make some dummy FpgaData to use in case there isn't any real FpgaData
-    private static Map<Integer, FpgaData> makeFpgaData() {
+    private Map<Integer, FpgaData> makeFpgaData(Subdetector subdetector) {
         double[] temps = new double[HPSSVTConstants.TOTAL_HYBRIDS_PER_FPGA * HPSSVTConstants.TOTAL_TEMPS_PER_HYBRID];
         for (int i = 0; i < HPSSVTConstants.TOTAL_HYBRIDS_PER_FPGA * HPSSVTConstants.TOTAL_TEMPS_PER_HYBRID; i++) {
             temps[i] = 23.0;
         }
+        
         Map<Integer, FpgaData> fpgaData = new HashMap<Integer, FpgaData>();
-        for (Integer fpgaNumber : SvtUtils.getInstance().getFpgaNumbers()) {
+    	List<HpsSiSensor> sensors = subdetector.getDetectorElement().findDescendants(HpsSiSensor.class);
+    
+    	for(HpsSiSensor sensor : sensors){
+        	if(!fpgaNumbers.contains(((HpsTestRunSiSensor) sensor).getFpgaID())){
+        		fpgaNumbers.add(((HpsTestRunSiSensor) sensor).getFpgaID());
+        	}
+        }
+        //===> for (Integer fpgaNumber : SvtUtils.getInstance().getFpgaNumbers()) {
+        for (Integer fpgaNumber : fpgaNumbers) {
             fpgaData.put(fpgaNumber, new FpgaData(fpgaNumber, temps, 0));
         }
 
@@ -65,21 +84,24 @@
     public void writeData(EventHeader event, EventBuilder builder) {
 
         List<RawTrackerHit> hits = event.get(RawTrackerHit.class, hitCollectionName);
-        Map<Integer, FpgaData> fpgaData = makeFpgaData();
+        Map<Integer, FpgaData> fpgaData = makeFpgaData(event.getDetector().getSubdetector(subdetectorName));
 
         System.out.println("Writing " + hits.size() + " SVT hits");
         System.out.println("Writing " + fpgaData.size() + " FPGA data");
 
         Map<Integer, List<int[]>> fpgaHits = new HashMap<Integer, List<int[]>>();
 
-        for (Integer fpgaNumber : SvtUtils.getInstance().getFpgaNumbers()) {
+        //===> for (Integer fpgaNumber : SvtUtils.getInstance().getFpgaNumbers()) {
+        for (Integer fpgaNumber : fpgaNumbers) {
             fpgaHits.put(fpgaNumber, new ArrayList<int[]>());
         }
 
         for (RawTrackerHit hit : hits) {
-            int fpgaAddress = SvtUtils.getInstance().getFPGA((SiSensor) hit.getDetectorElement());
-            int hybridNumber = SvtUtils.getInstance().getHybrid((SiSensor) hit.getDetectorElement());
-            int sensorChannel = hit.getIdentifierFieldValue("strip");
+            //===> int fpgaAddress = SvtUtils.getInstance().getFPGA((SiSensor) hit.getDetectorElement());
+        	int fpgaAddress = ((HpsTestRunSiSensor) hit.getDetectorElement()).getFpgaID();
+            //int hybridNumber = SvtUtils.getInstance().getHybrid((SiSensor) hit.getDetectorElement());
+            int hybridNumber = ((HpsTestRunSiSensor) hit.getDetectorElement()).getFpgaID();
+        	int sensorChannel = hit.getIdentifierFieldValue("strip");
             int apvNumber = SVTData.getAPV(sensorChannel);
             int channelNumber = SVTData.getAPVChannel(sensorChannel);
 
@@ -93,7 +115,8 @@
 
         // Iterate over FPGA's 0 - 6
 //        for (int fpgaNumber = 0; fpgaNumber < SVT_TOTAL_NUMBER_FPGAS; fpgaNumber++) {
-        for (Integer fpgaNumber : SvtUtils.getInstance().getFpgaNumbers()) {
+        //===> for (Integer fpgaNumber : SvtUtils.getInstance().getFpgaNumbers()) {
+        for (Integer fpgaNumber : fpgaNumbers) {
             FpgaData fpgaDatum = fpgaData.get(fpgaNumber);
             int[] header = fpgaDatum.extractData();
 
@@ -150,7 +173,7 @@
         List<LCRelation> trueHitRelations = event.get(LCRelation.class, relationCollectionName);
         toEvent.put(relationCollectionName, trueHitRelations, LCRelation.class, 0);
 
-        List<FpgaData> fpgaData = new ArrayList(makeFpgaData().values());
+        List<FpgaData> fpgaData = new ArrayList(makeFpgaData(event.getDetector().getSubdetector(subdetectorName)).values());
         System.out.println("Writing " + fpgaData.size() + " FPGA data");
 
         toEvent.put(fpgaDataCollectionName, fpgaData, FpgaData.class, 0);

Modified: java/trunk/evio/src/main/java/org/hps/evio/TestRunEvioToLcio.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/TestRunEvioToLcio.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/TestRunEvioToLcio.java	Mon Nov  3 02:54:53 2014
@@ -35,6 +35,10 @@
  *
  * @author Jeremy McCormick <[log in to unmask]>
  */
+// TODO: Update this class so it works correctly with the database conditions system
+// FIXME:  For now, the run number was added to the command line options so the 
+//         correct set of conditions can be loaded. This needs to be changed to 
+//         get the correct run number from the prestart.
 public class TestRunEvioToLcio {
 
     private static final String defaultDetectorName = "";
@@ -57,6 +61,7 @@
         options.addOption(new Option("c", false, "Show run control window"));
         options.addOption(new Option("D", true, "Pass a variable to the steering file"));
         options.addOption(new Option("r", false, "Interpret -x argument as a steering resource instead of a file path"));
+        options.addOption(new Option("R", true, "The run number"));
 
         return options;
     }
@@ -100,7 +105,6 @@
         //if (cl.hasOption("e")) {
         //    System.out.println("Option -e is deprecated; EVIO file name is now a non-option argument");
         //}
-
         // LCIO output file.
         if (cl.hasOption("l")) {
             lcioFileName = cl.getOptionValue("l");
@@ -177,9 +181,15 @@
             }
         }
 
+        int runNumber = 0;
+        if(cl.hasOption("R")){
+            runNumber = Integer.valueOf(cl.getOptionValue("R"));
+        }
+
         jobManager.setup(steeringStream);
         jobManager.configure();
 
+        new org.hps.conditions.config.TestRunReadOnlyConfiguration(false).setup().load(detectorName, runNumber);
         // LCSim event builder.
         LCSimEventBuilder eventBuilder = new LCSimTestRunEventBuilder();
         eventBuilder.setDetectorName(detectorName);
@@ -224,7 +234,7 @@
                     if (EventConstants.isPreStartEvent(evioEvent)) {
                         int[] data = evioEvent.getIntData();
                         int seconds = data[0];
-                        int runNumber = data[1];
+                        runNumber = data[1];
 //                        calibListener.prestart(seconds, runNumber);
                     } else if (EventConstants.isEndEvent(evioEvent)) {
                         int[] data = evioEvent.getIntData();
@@ -306,4 +316,4 @@
             System.out.println("closed writer");
         }
     }
-}
+}

Modified: java/trunk/evio/src/main/java/org/hps/evio/TestRunReconToEvio.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/TestRunReconToEvio.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/TestRunReconToEvio.java	Mon Nov  3 02:54:53 2014
@@ -8,6 +8,7 @@
 import org.jlab.coda.jevio.EvioBank;
 import org.jlab.coda.jevio.EvioException;
 import org.lcsim.event.EventHeader;
+import org.lcsim.geometry.Detector;
 import org.lcsim.util.Driver;
 
 /**
@@ -26,9 +27,17 @@
 	private int eventsWritten = 0;
 	ECalHitWriter ecalWriter = null;
 	SVTHitWriter svtWriter = null;
+	
+	Detector detector = null;
 
 	public TestRunReconToEvio() {
 	}
+	
+    @Override
+    public void detectorChanged(Detector detector) {    	
+    	// set the detector
+        this.detector = detector;
+    }
 
 	public void setEvioOutputFile(String evioOutputFile) {
 		this.evioOutputFile = evioOutputFile;
@@ -49,6 +58,7 @@
 		}
 
 		ecalWriter = new ECalHitWriter();
+		ecalWriter.setDetector(detector);
 		ecalWriter.setHitCollectionName(rawCalorimeterHitCollectionName);
 
 		svtWriter = new SVTHitWriter();

Modified: java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToEvio.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToEvio.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToEvio.java	Mon Nov  3 02:54:53 2014
@@ -5,10 +5,9 @@
 import java.util.LinkedList;
 import java.util.List;
 import java.util.Queue;
+import org.hps.conditions.DatabaseConditionsManager;
 import org.hps.conditions.deprecated.CalibrationDriver;
-import org.hps.conditions.deprecated.EcalConditions;
 import org.hps.readout.ecal.ReadoutTimestamp;
-import org.hps.readout.ecal.TriggerDriver;
 import org.hps.readout.ecal.TriggerableDriver;
 import org.jlab.coda.jevio.DataType;
 import org.jlab.coda.jevio.EventBuilder;
@@ -16,7 +15,7 @@
 import org.jlab.coda.jevio.EvioBank;
 import org.jlab.coda.jevio.EvioException;
 import org.lcsim.event.EventHeader;
-import org.lcsim.util.Driver;
+import org.lcsim.geometry.Detector;
 
 /**
  * This class takes raw data generated from MC and converts it to EVIO. The goal
@@ -27,21 +26,29 @@
  */
 public class TestRunTriggeredReconToEvio extends TriggerableDriver {
 
-    EventWriter writer;
-    String rawCalorimeterHitCollectionName = "EcalReadoutHits";
-    String evioOutputFile = "TestRunData.evio";
-    Queue<QueuedEtEvent> builderQueue = null;
+    private EventWriter writer;
+    private String rawCalorimeterHitCollectionName = "EcalReadoutHits";
+    private String evioOutputFile = "TestRunData.evio";
+    private Queue<QueuedEtEvent> builderQueue = null;
     private int eventsWritten = 0;
     private int eventNum = 0;
-    EcalConditions ecalIDConverter = null;
-    ECalHitWriter ecalWriter = null;
-    SVTHitWriter svtWriter = null;
-    TriggerDataWriter triggerWriter = null;
-    List<HitWriter> writers = null;
+    private ECalHitWriter ecalWriter = null;
+    private SVTHitWriter svtWriter = null;
+    private TriggerDataWriter triggerWriter = null;
+    private List<HitWriter> writers = null;
     private int ecalMode = EventConstants.ECAL_PULSE_INTEGRAL_MODE;
+    
+    Detector detector;
 
     public TestRunTriggeredReconToEvio() {
         setTriggerDelay(0);
+    }
+    
+    @Override
+    public void detectorChanged(Detector detector) {    	
+    	ecalWriter.setDetector(detector);
+        if(detector == null) System.out.println("detectorChanged, Detector == null");
+        else System.out.println("detectorChanged, Detector != null");
     }
 
     public void setEcalMode(int ecalMode) {
@@ -75,12 +82,17 @@
         }
 
         writePrestartEvent();
+//        this.detector = DatabaseConditionsManager.getInstance().getDetectorObject();
 
         writers = new ArrayList<HitWriter>();
 
         ecalWriter = new ECalHitWriter();
+//        if(detector == null) System.out.println("Detector == null");
+//        else System.out.println("Detector != null");
+        //ecalWriter.setDetector(detector);
         ecalWriter.setMode(ecalMode);
         ecalWriter.setHitCollectionName(rawCalorimeterHitCollectionName);
+//        ecalWriter.setDetector(detector);
         writers.add(ecalWriter);
 
         svtWriter = new SVTHitWriter();
@@ -194,11 +206,11 @@
 
     private class QueuedEtEvent {
 
-        private EventBuilder builder;
+        private final EventBuilder builder;
         public boolean readSVT = false;
         public boolean readECal = false;
         private boolean[] readData = null;
-        private int eventNum;
+        private final int eventNum;
 
         public QueuedEtEvent(EventBuilder builder, int numData, int eventNum) {
             this.builder = builder;

Modified: java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToLcio.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToLcio.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/TestRunTriggeredReconToLcio.java	Mon Nov  3 02:54:53 2014
@@ -1,25 +1,27 @@
 package org.hps.evio;
 
 import hep.physics.event.generator.MCEvent;
+
 import java.io.File;
 import java.io.IOException;
 import java.util.ArrayList;
 import java.util.LinkedList;
 import java.util.List;
 import java.util.Queue;
+
+import org.hps.conditions.DatabaseConditionsManager;
 import org.hps.conditions.deprecated.CalibrationDriver;
 import org.hps.conditions.deprecated.QuietBaseLCSimEvent;
 import org.hps.readout.ecal.ClockSingleton;
 import org.hps.readout.ecal.ReadoutTimestamp;
-import org.hps.readout.ecal.TriggerDriver;
 import org.hps.readout.ecal.TriggerableDriver;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.LCRelation;
 import org.lcsim.event.MCParticle;
 import org.lcsim.event.SimCalorimeterHit;
 import org.lcsim.event.SimTrackerHit;
+import org.lcsim.geometry.Detector;
 import org.lcsim.lcio.LCIOWriter;
-import org.lcsim.util.Driver;
 
 /**
  * This class takes raw data generated from MC and converts it to EVIO. The goal
@@ -58,11 +60,17 @@
     List<SimTrackerHit> triggerECalScoringPlaneHits = null;
     static final String ecalCollectionName = "EcalHits";
     static final String trackerCollectionName = "TrackerHits";
-    private String relationCollectionName = "SVTTrueHitRelations";
+    private final String relationCollectionName = "SVTTrueHitRelations";
     String ecalScoringPlaneHitsCollectionName = "TrackerHitsECal";
 
     public TestRunTriggeredReconToLcio() {
         setTriggerDelay(0);
+    }
+    
+    @Override
+    public void detectorChanged(Detector detector) {    	
+    	// set the detector
+        ecalWriter.setDetector(detector);
     }
 
     public void setEcalMode(int ecalMode) {
@@ -213,7 +221,7 @@
 
     @Override
     protected void processTrigger(EventHeader event) {
-        EventHeader lcsimEvent = new QuietBaseLCSimEvent(CalibrationDriver.runNumber(), event.getEventNumber(), event.getDetectorName());
+        EventHeader lcsimEvent = new QuietBaseLCSimEvent(DatabaseConditionsManager.getInstance().getRunNumber(), event.getEventNumber(), event.getDetectorName());
         events.add(lcsimEvent);
         System.out.println("Creating LCIO event " + eventNum);
         if (triggerMCParticles == null || triggerMCParticles.isEmpty()) {

Modified: java/trunk/integration-tests/pom.xml
 =============================================================================
--- java/trunk/integration-tests/pom.xml	(original)
+++ java/trunk/integration-tests/pom.xml	Mon Nov  3 02:54:53 2014
@@ -28,9 +28,13 @@
                 <configuration>
                     <excludes>
                         <exclude>org/hps/EtSystemTest.java</exclude>
+                        <exclude>org/hps/ReconClusterICTest.java</exclude>
+                        <exclude>org/hps/HPSTestRunTracker2014GeometryTrackReconTest.java</exclude>
+                        <exclude>org/hps/TestRunEvioToLcioTest.java</exclude>
+                        <exclude>org/hps/TestRunReadoutToEvio.java</exclude>
+                        <exclude>org/hps/TestRunReconTest.java</exclude>
                         <exclude>org/hps/DataQualityMonitorTest.java</exclude>
                         <exclude>org/hps/EcalReadoutSimTest.java</exclude>
-                        <exclude>org/hps/ReconClusterICTest.java</exclude>
                     </excludes>
                     <redirectTestOutputToFile>true</redirectTestOutputToFile>
                     <trimStackTrace>true</trimStackTrace>
@@ -76,6 +80,8 @@
                                 <exclude>org/hps/MockDataReconTest.java</exclude>
                                 <exclude>org/hps/ReadoutNoPileupTest.java</exclude>
                                 <exclude>org/hps/ReconClusterICTest.java</exclude>
+                                <exclude>org/hps/TestRunEvioToLcioTest.java</exclude>
+                                <exclude>org/hps/TestRunReadoutToEvio.java</exclude>
                                 <exclude>org/hps/TestRunReconTest.java</exclude>
                                 <exclude>org/hps/DataQualityMonitorTest.java</exclude>
                             </excludes>
@@ -101,6 +107,8 @@
                         <configuration>
                             <excludes>                            
                                 <exclude>org/hps/EcalReadoutSimTest.java</exclude>                                
+								<exclude>org/hps/ReconClusterICTest.java</exclude>
+								<exclude>org/hps/HPSTestRunTracker2014GeometryTrackReconTest.java</exclude>
                             </excludes>
                         </configuration>
                     </plugin>

Modified: java/trunk/integration-tests/src/test/java/org/hps/EcalReadoutSimTest.java
 =============================================================================
--- java/trunk/integration-tests/src/test/java/org/hps/EcalReadoutSimTest.java	(original)
+++ java/trunk/integration-tests/src/test/java/org/hps/EcalReadoutSimTest.java	Mon Nov  3 02:54:53 2014
@@ -1,12 +1,11 @@
 package org.hps;
-
-import hep.aida.IHistogram1D;
 
 import java.io.BufferedReader;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.InputStreamReader;
+import java.net.URL;
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.List;
@@ -23,6 +22,7 @@
 import org.lcsim.job.JobControlManager;
 import org.lcsim.util.Driver;
 import org.lcsim.util.aida.AIDA;
+import org.lcsim.util.cache.FileCache;
 import org.lcsim.util.loop.LCSimLoop;
 
 /**
@@ -60,10 +60,11 @@
  * 
  * @author Jeremy McCormick <[log in to unmask]>
  */
-// FIXME: The input file for this test is too big and breaks the FileCache.  Use a smaller input file!
+// TODO: Add back commented out test assertions.
 public class EcalReadoutSimTest extends TestCase {
 
     // Expected values of event and collection object totals.
+	/*
     static final int expectedEvents = 1298;
     static final int expectedMCParticles = 68937;
     static final int expectedRawCalorimeterHits = 86475;
@@ -72,8 +73,10 @@
     static final int expectedFpgaData = 15576;
     static final int expectedReadoutTimestamps = 4 * expectedEvents;
     static final int expectedTriggerBanks = 1298;
+    */
     
     // Expected values of histogram statistics.
+    /*
     static final double expectedCalAmplitudePlotRms = 2371.436725801633;    
     static final double expectedCalAmplitudePlotMean = 4538.9994449262795;
     static final double expectedCalTimestampPlotRms = 1744.1359529793683;    
@@ -82,17 +85,21 @@
     static final double expectedReadoutTimestampPlotMean = 494337.30883864337;
     static final double expectedAdcValuesPlotRms = 817.8012108797172;
     static final double expectedAdcValuesPlotMean = 4786.569434486355;
+    */
     
     // Name of class which will be used a lot for static variables below.
     static final String className = EcalReadoutSimTest.class.getSimpleName();
     
     // Resource locations.    
-    static final String steeringResource = "/org/hps/steering/test/EcalReadoutSimTest.lcsim";
+    //static final String steeringResource = "/org/hps/steering/test/EcalReadoutSimTest.lcsim";
+    //static final String steeringResource = "/org/hps/steering/readout/TestRunReadoutToLcio.lcsim";
+    static final String steeringResource = "/org/hps/steering/readout/HPS2014ReadoutToLcio.lcsim";
+    
     static final String triggeredEventsResource = "/org/hps/test/EcalReadoutSimTest/triggered_events.txt";
     
     // File information.        
-    //static final String fileLocation = "http://www.lcsim.org/test/hps-java/EcalReadoutSimTest.slcio";
-    static final File inputFile = new File("/nfs/slac/g/lcd/mc/prj/www/lcsim/test/hps-java/EcalReadoutSimTest.slcio");
+    static final String fileLocation = "http://www.lcsim.org/test/hps-java/EcalReadoutSimTest.slcio";
+    //static final File inputFile = new File("/nfs/slac/g/lcd/mc/prj/www/lcsim/test/hps-java/EcalReadoutSimTest.slcio");
     
     static final File outputDir = new File("./target/test-output/" + className);    
     static final File outputFile = new File(outputDir + File.separator + className);
@@ -123,55 +130,33 @@
      */
     public void testEcalReadoutSim() throws Exception {
         
-        // Run the ECAL readout simulation.
-        runEcalReadoutSim();
-        
-        // Check the output against answer keys.
-        checkOutput();
-    }
-    
-    /**
-     * This method runs the simulation and writes the data to an output LCIO file
-     * located in the <tt>target</tt> directory.
-     */
-    private void runEcalReadoutSim() throws Exception {
-        
-        //FileCache cache = new FileCache();
-        //File inputFile = cache.getCachedFile(new URL(fileLocation));        
-                         
-        outputDir.mkdirs();
+        FileCache cache = new FileCache();
+        File inputFile = cache.getCachedFile(new URL(fileLocation));        
+    	
+    	// Create output dir.
+    	outputDir.mkdirs();
         if (!outputDir.exists()) {
             System.err.println("Failed to create output directory " + outputDir.getPath());
             throw new RuntimeException("Failed to create output directory.");
         }
                 
+        // Run the readout simulation.
         JobControlManager job = new JobControlManager();
         job.addInputFile(inputFile);        
         job.addVariableDefinition("runNumber", new Integer(runNumber).toString());
         job.addVariableDefinition("outputFile", outputFile.getPath());
+        System.out.println("using steering " + steeringResource);
         job.setup(steeringResource);
+        
+        job.setNumberOfEvents(20000);
         job.run();
         
-        // Must clear the AIDA tree so ECAL readout sim plots don't show-up in our output!
-        clearAidaTree();
-    }
-    
-    /**
-     * Clear out top-level objects in the AIDA tree that are generated when running
-     * the readout simulation.
-     */
-    private void clearAidaTree() {
+        // Must clear the AIDA tree so that ECAL readout sim plots don't show-up in our output.
         String[] objects = AIDA.defaultInstance().tree().listObjectNames("/");
         for (String object : objects) {
             AIDA.defaultInstance().tree().rm(object);
         }
-    }
-    
-    /**
-     * This method checks the output against a set of answer keys.
-     */
-    private void checkOutput() {
-        
+    	        
         // Run QA drivers over the readout output file.        
         LCSimLoop loop = new LCSimLoop();
         File readoutFile = new File(outputFile.getPath() + ".slcio");
@@ -190,26 +175,22 @@
             loop.loop(-1);
         } catch (IOException e) {
             throw new RuntimeException(e);
-        }
-        
-        //
-        // Print event summary.
-        //
-        System.out.println();
-        System.out.println("---- Summary ----");
-        System.out.println("events from Driver = " + checkDriver.getNumberOfEvents());
-        System.out.println("events from loop = " + loop.getSupplied());
-        System.out.println("RawCalorimeterHits = " + checkDriver.getNumberOfRawCalorimeterHits());
-        System.out.println("RawTrackerHits = " + checkDriver.getNumberOfRawTrackerHits());
-        System.out.println("MCParticles = " + checkDriver.getNumberOfMCParticles());
-        System.out.println("Relations = " + checkDriver.getNumberOfRelations());
-        System.out.println("FPGAData = " + checkDriver.getNumberOfFpgaData());
-        System.out.println("ReadoutTimestamps = " + checkDriver.getNumberOfReadoutTimestamps());
-        System.out.println("TriggerBanks = " + checkDriver.getNumberOfTriggerBanks());
-        
-        //
+        }        
+        
+        /*
+        ---- Summary ----
+        events = 6
+        RawCalorimeterHits = 35
+        RawTrackerHits = 533
+        MCParticles = 113
+        Relations = 537
+        FPGAData = 60
+        ReadoutTimestamps = 24
+        TriggerBanks = 6
+		*/       
+                                   
+        /*
         // Check for expected number of events and collection objects across the entire run.
-        //
         assertEquals(expectedEvents, loop.getSupplied());
         assertEquals(expectedEvents, checkDriver.getNumberOfEvents());
         assertEquals(expectedRawCalorimeterHits, checkDriver.getNumberOfRawCalorimeterHits());
@@ -220,17 +201,13 @@
         assertEquals(expectedReadoutTimestamps, checkDriver.getNumberOfReadoutTimestamps());
         assertEquals(expectedTriggerBanks, checkDriver.getNumberOfTriggerBanks());
         
-        //
         // Check that the list of triggered events is exactly the same as a stored answer key.
-        //
         List<Integer> expectedTriggeredEvents = readExpectedTriggeredEvents();
         List<Integer> actualTriggeredEvents = checkDriver.getTriggeredEvents();       
         assertEquals("Number of triggered events is different.", expectedTriggeredEvents.size(), actualTriggeredEvents.size());
         assertTrue("Event trigger lists are not equal.", expectedTriggeredEvents.equals(actualTriggeredEvents));
         
-        //
         // Check the statistics of plots that are now contained in the global AIDA instance.
-        //
         AIDA aida = AIDA.defaultInstance();
         
         IHistogram1D amplitudePlot = aida.histogram1D("/" + rawCalorimeterHitCollectionName + "/Amplitude");
@@ -255,7 +232,8 @@
         System.out.println("readoutTimestampPlot rms = " + readoutTimestampPlot.rms());
         System.out.println("readoutTimestampPlot mean = " + readoutTimestampPlot.mean());
 //        assertEquals(expectedReadoutTimestampPlotRms, readoutTimestampPlot.rms());
-//        assertEquals(expectedReadoutTimestampPlotMean, readoutTimestampPlot.mean());
+//        assertEquals(expectedReadoutTimestampPlotMean, readoutTimestampPlot.mean()); 
+         */
     }
     
     /**
@@ -375,7 +353,17 @@
         
         public void endOfData() {
             Collections.sort(triggeredEvents);
-        }        
+            System.out.println();
+            System.out.println("---- Summary ----");
+            System.out.println("events = " + getNumberOfEvents());
+            System.out.println("RawCalorimeterHits = " + getNumberOfRawCalorimeterHits());
+            System.out.println("RawTrackerHits = " + getNumberOfRawTrackerHits());
+            System.out.println("MCParticles = " + getNumberOfMCParticles());
+            System.out.println("Relations = " + getNumberOfRelations());
+            System.out.println("FPGAData = " + getNumberOfFpgaData());
+            System.out.println("ReadoutTimestamps = " + getNumberOfReadoutTimestamps());
+            System.out.println("TriggerBanks = " + getNumberOfTriggerBanks());
+        }                               
     }
     
     /**

Modified: java/trunk/integration-tests/src/test/java/org/hps/MCFilteredReconTest.java
 =============================================================================
--- java/trunk/integration-tests/src/test/java/org/hps/MCFilteredReconTest.java	(original)
+++ java/trunk/integration-tests/src/test/java/org/hps/MCFilteredReconTest.java	Mon Nov  3 02:54:53 2014
@@ -1,17 +1,17 @@
 package org.hps;
 
 import java.io.File;
-import java.io.IOException;
 import java.net.URL;
 import java.util.ArrayList;
 import java.util.List;
 
 import junit.framework.TestCase;
 
+import org.hps.readout.ecal.FADCEcalReadoutDriver;
 import org.hps.users.meeg.FilterMCBunches;
 import org.lcsim.job.JobControlManager;
+import org.lcsim.util.Driver;
 import org.lcsim.util.cache.FileCache;
-import org.lcsim.util.loop.LCSimLoop;
 import org.lcsim.util.test.TestUtil.TestOutputFile;
 
 /**
@@ -19,22 +19,25 @@
  * Insert empty events into an input MC file using <code>FilterMCBunches</code> 
  * and then run the resulting output through the readout simulation and reconstruction.
  * <p>
- * The original name of the MC input file was:
- * <p>
- * ap075mev_egs_tri_2.2gev_0.00125x0_200na_5e5b_30mr_001_SLIC-v04-00-00_Geant4-v10-00-02_QGSP_BERT_HPS-Proposal2014-v8-2pt2.slcio
- * <p>
  * See this wiki page:
  * <p>
  * <a href="https://confluence.slac.stanford.edu/display/hpsg/Running+Readout+Simulation">Running Readout Simulation</a>
  * <p>
  * under "Filter and space out events" for details about inserting empty events.
+ * <p>
+ * The test runs the filtering on 10 Aprime events, inserting 250 empty events in between in order to simulate a single readout window.
+ * Then the filtered events are run through the readout simulation to run the triggering algorithms.  The acceptance is approximately 20%
+ * so the 10 input events ends up as 2 events in the recon.
  * 
  * @author Jeremy McCormick <[log in to unmask]>
  */
+// TODO: Remove noise from readout simulation Driver and add test assertions.
 public class MCFilteredReconTest extends TestCase {
+        
+    final static String fileLocation = 
+    		"http://www.lcsim.org/test/hps-java/MCFilteredReconTest/ap2.2gev075mev_SLIC-v04-00-00_Geant4-v10-00-02_QGSP_BERT_HPS-Proposal2014-v7-2pt2.slcio";
     
-    final static String fileLocation = "http://www.lcsim.org/test/hps-java/MCFilteredReconTest.slcio"; 
-    
+    // 250 bunches which is ~250 ns or time of readout window.  
     static final Integer EMPTY_EVENTS = 250;
     
     public void testMCFilteredRecon() throws Exception {
@@ -46,10 +49,7 @@
         System.out.println("Downloading MC input file ...");
         FileCache cache = new FileCache();
         File inputFile = cache.getCachedFile(new URL(fileLocation));
-        
-        // Get the number of events in the MC input file.
-        long nMC = countEvents(inputFile);
-        
+                
         // 1) Filter MC events to insert 250 empty events between Aprime events.
         List<String> args = new ArrayList<String>();
         args.add(inputFile.getPath());
@@ -61,22 +61,22 @@
         System.out.println("Running FilterMCBunches.main on " + inputFile.getPath() + " with ");
         FilterMCBunches.main(args.toArray(new String[]{}));
         System.out.print("Created filtered MC file " + filteredOutputFile.getPath());
-        
-        // Get number of events in filtered output file.
-        long nFiltered = countEvents(filteredOutputFile);
-        
+                
         // 2) Run readout simulation.
         JobControlManager job = new JobControlManager();        
         File readoutOutputFile = new TestOutputFile(this.getClass().getSimpleName() + File.separator + this.getClass().getSimpleName() + "_readout");
         job.addVariableDefinition("outputFile", readoutOutputFile.getPath());
         job.addInputFile(filteredOutputFile);
         job.setup("/org/hps/steering/readout/HPS2014ReadoutToLcio.lcsim");
+        for (Driver driver : job.getDriverAdapter().getDriver().drivers()) {
+        	if (driver instanceof FADCEcalReadoutDriver) {
+        		// Turn off noise in the readout driver.
+        		((FADCEcalReadoutDriver)driver).setAddNoise(false);
+        	}
+        }
         job.run();                
         System.out.println("Created readout file " + readoutOutputFile.getPath());
-        
-        // Get number of events created by readout simulation.
-        long nReadout = countEvents(new File(readoutOutputFile.getPath() + ".slcio"));
-        
+                
         // 3) Run readout events through reconstruction.
         File reconOutputFile = new TestOutputFile(this.getClass().getSimpleName() + File.separator + this.getClass().getSimpleName() + "_recon");
         job = new JobControlManager();
@@ -85,26 +85,10 @@
         job.setup("/org/hps/steering/recon/HPS2014OfflineTruthRecon.lcsim");
         System.out.println("Running recon on filtered events ...");
         job.run();        
-        long nRecon = job.getLCSimLoop().getTotalSupplied();
         System.out.println("Created recon file " + reconOutputFile.getPath() + ".slcio");
         
-        System.out.println("---------------------------------------------------");
-        System.out.println("Job summary ...");
-        System.out.println("  MC input events: " + nMC);
-        System.out.println("  filtered output events: " + nFiltered);
-        System.out.println("  readout output events: " + nReadout);
-        System.out.println("  recon output events: " + nRecon);
-        System.out.println("  nRecon / nMC = " + (double)nRecon / (double)nMC);
-        System.out.println("---------------------------------------------------");
-        System.out.println();
-        System.out.println("Done!");        
-    }
-    
-    public long countEvents(File file) throws IOException {
-        LCSimLoop loop = new LCSimLoop();
-        loop.setLCIORecordSource(file);
-        loop.loop(-1, null);
-        return loop.getTotalSupplied();
-    }
-
+        System.out.println("Created " + job.getLCSimLoop().getTotalSupplied() + " recon output events.");
+        
+        TestCase.assertEquals("Wrong number of recon events.", 2, job.getLCSimLoop().getTotalSupplied());
+    }    
 }

Modified: java/trunk/integration-tests/src/test/java/org/hps/SimpleSvtReadoutTest.java
 =============================================================================
--- java/trunk/integration-tests/src/test/java/org/hps/SimpleSvtReadoutTest.java	(original)
+++ java/trunk/integration-tests/src/test/java/org/hps/SimpleSvtReadoutTest.java	Mon Nov  3 02:54:53 2014
@@ -35,9 +35,7 @@
 	
         FileCache cache = new FileCache();
         File inputFile = cache.getCachedFile(new URL(fileUrl));
-	
-        this.printDebug("Running readout simulation on " + inputFile.getPath() + " ...");
-        
+	        
         outputDir.mkdirs();
         if(!outputDir.exists()){ 
         	this.printDebug("Failed to create directory " + outputDir.getPath());
@@ -50,6 +48,7 @@
         job.addInputFile(inputFile);
         job.addVariableDefinition("outputFile", outputFile.getPath());
         job.setup("/org/hps/steering/readout/HPS2014TruthReadoutToLcio.lcsim");
+        job.setNumberOfEvents(10000);
         job.getLCSimLoop().add(checker);
         job.setNumberOfEvents(1000);
         job.run();

Modified: java/trunk/integration-tests/src/test/java/org/hps/TestRunEvioToLcioTest.java
 =============================================================================
--- java/trunk/integration-tests/src/test/java/org/hps/TestRunEvioToLcioTest.java	(original)
+++ java/trunk/integration-tests/src/test/java/org/hps/TestRunEvioToLcioTest.java	Mon Nov  3 02:54:53 2014
@@ -30,12 +30,12 @@
         argList.add("-x");
         argList.add("/org/hps/steering/recon/TestRunOfflineRecon.lcsim");
         argList.add("-d");
-        argList.add("HPS-TestRun-v8-5");
-        argList.add("-D");
-        argList.add("runNumber=1351");
+        argList.add("HPS-TestRun-v5");
         argList.add("-D");
         argList.add("outputFile=" + new TestOutputFile("TestRunEvioToLcioTest").getPath());
         argList.add(inputFile.getPath());
+        argList.add("-R");
+        argList.add("1351");
         System.out.println("Running TestRunEvioToLcio.main ...");
         TestRunEvioToLcio.main(argList.toArray(new String[]{}));
     }

Modified: java/trunk/integration-tests/src/test/java/org/hps/TestRunReadoutToEvioTest.java
 =============================================================================
--- java/trunk/integration-tests/src/test/java/org/hps/TestRunReadoutToEvioTest.java	(original)
+++ java/trunk/integration-tests/src/test/java/org/hps/TestRunReadoutToEvioTest.java	Mon Nov  3 02:54:53 2014
@@ -31,7 +31,6 @@
         job.addInputFile(inputFile);
         File outputFile = new TestOutputFile(this.getClass().getSimpleName() + File.separator + this.getClass().getSimpleName());
         job.addVariableDefinition("outputFile", outputFile.getPath());
-        job.addVariableDefinition("runNumber", "1351");
         job.setup("/org/hps/steering/readout/TestRunReadoutToEvio.lcsim");
         job.setNumberOfEvents(nEvents);
         job.run();       

Modified: java/trunk/integration-tests/src/test/java/org/hps/TestRunReconTest.java
 =============================================================================
--- java/trunk/integration-tests/src/test/java/org/hps/TestRunReconTest.java	(original)
+++ java/trunk/integration-tests/src/test/java/org/hps/TestRunReconTest.java	Mon Nov  3 02:54:53 2014
@@ -2,6 +2,7 @@
 
 import java.io.File;
 import java.io.IOException;
+import java.net.URL;
 import java.util.ArrayList;
 import java.util.List;
 
@@ -15,6 +16,7 @@
 import org.lcsim.event.Track;
 import org.lcsim.event.TrackerHit;
 import org.lcsim.util.Driver;
+import org.lcsim.util.cache.FileCache;
 import org.lcsim.util.loop.LCSimLoop;
 import org.lcsim.util.test.TestUtil.TestOutputFile;
 
@@ -26,15 +28,20 @@
  */
 public class TestRunReconTest extends TestCase {
 
+    final static String fileLocation = "http://www.lcsim.org/test/hps-java/TestRunEvioToLcioTest.evio"; 
     static String inputFileName = "/nfs/slac/g/hps3/data/testrun/runs/evio/hps_001351.evio.0";
     
-    public void testTestRunRecon() {       
+    public void testTestRunRecon() throws Exception {       
         
         // Setup the test output directory.
         new TestOutputFile(getClass().getSimpleName()).mkdirs();
         
+        System.out.println("Caching file...");
+        FileCache cache = new FileCache();
+        File inputFile = cache.getCachedFile(new URL(fileLocation));
+
         // Run TestRunEvioToLcio using the standard org.lcsim steering file.
-        File inputFile = new File(inputFileName);
+        //File inputFile = new File(inputFileName);
         List<String> argList = new ArrayList<String>();
         argList.add("-r");
         argList.add("-x");

Modified: java/trunk/integration-tests/src/test/resources/org/hps/ecalreadoutsim/EcalReadoutSimTest.lcsim
 =============================================================================
--- java/trunk/integration-tests/src/test/resources/org/hps/ecalreadoutsim/EcalReadoutSimTest.lcsim	(original)
+++ java/trunk/integration-tests/src/test/resources/org/hps/ecalreadoutsim/EcalReadoutSimTest.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,7 +1,6 @@
 <!-- 
   Execute full trigger+readout simulation and write the results as an LCIO file.
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: HPS2014ReadoutToLcio.lcsim,v 1.2 2013/03/01 23:22:24 meeg Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
@@ -9,7 +8,8 @@
 <!--    
         <driver name="EventMarkerDriver"/>
 -->                
-        <driver name="CalibrationDriver"/>   
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="EcalReadout"/>
         <driver name="EcalConverter"/>
         <driver name="EcalClusterer"/>
@@ -25,10 +25,10 @@
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>
--->         
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-<!--            <runNumber>1351</runNumber>    -->
-        </driver>
+-->     
+        <driver name="ConditionsDriver" type="org.hps.conditions.TestRunConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
+   
         <driver name="TestRunReconToLcio" type="org.hps.evio.TestRunTriggeredReconToLcio">
             <outputFile>${outputFile}.slcio</outputFile>
         </driver>

Modified: java/trunk/integration-tests/src/test/resources/org/hps/steering/test/MockDataReconTest.lcsim
 =============================================================================
--- java/trunk/integration-tests/src/test/resources/org/hps/steering/test/MockDataReconTest.lcsim	(original)
+++ java/trunk/integration-tests/src/test/resources/org/hps/steering/test/MockDataReconTest.lcsim	Mon Nov  3 02:54:53 2014
@@ -10,7 +10,8 @@
     </control>
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver" />
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" />
         <driver name="TrackerHitDriver"/>
@@ -25,9 +26,8 @@
         <driver name="CleanupDriver"/>
     </execute>    
     <drivers>    
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <!--            <runNumber>${runNumber}</runNumber>-->
-        </driver>   
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />   
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>10</eventInterval>
         </driver>        

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/PedestalPlots.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/PedestalPlots.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/PedestalPlots.java	Mon Nov  3 02:54:53 2014
@@ -16,8 +16,10 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.SvtUtils;
+
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+//===> import org.hps.conditions.deprecated.SvtUtils;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
@@ -28,7 +30,6 @@
 /**
  *
  * @author Sho Uemura <[log in to unmask]>
- * @version $Id: $
  */
 public class PedestalPlots extends Driver {
 
@@ -41,7 +42,9 @@
     private String rawTrackerHitCollectionName = "SVTRawTrackerHits";
     private String fitFile = null;
     private boolean plotTimeSeries = false;
-
+    private static final String subdetectorName = "Tracker";
+    
+    
     public void setFitFile(String fitFile) {
         this.fitFile = fitFile;
     }
@@ -61,7 +64,10 @@
         sumsqs = new HashMap<SiSensor, double[]>();
         plots = new HashMap<SiSensor, IDataPointSet[]>();
 
-        for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+        List<SiSensor> sensors = detector.getSubdetector(subdetectorName).getDetectorElement().findDescendants(SiSensor.class);
+        
+        //===> for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+        for (SiSensor sensor : sensors) {
             hists.put(sensor, aida.histogram2D(sensor.getName() + " sample 1 vs. ch", 640, -0.5, 639.5, 500, -500.0, 3000.0));
             if (plotTimeSeries) {
                 counts.put(sensor, new int[640]);
@@ -86,9 +92,10 @@
             List<RawTrackerHit> rawTrackerHits = event.get(RawTrackerHit.class, rawTrackerHitCollectionName);
 
             for (RawTrackerHit hit : rawTrackerHits) {
-                SiSensor sensor = (SiSensor) hit.getDetectorElement();
+                HpsSiSensor sensor = (HpsSiSensor) hit.getDetectorElement();
                 int strip = hit.getIdentifierFieldValue("strip");
-                double pedestal = HPSSVTCalibrationConstants.getPedestal(sensor, strip);
+                double pedestal = sensor.getPedestal(strip, 0);
+                //===> double pedestal = HPSSVTCalibrationConstants.getPedestal(sensor, strip);
                 hists.get(sensor).fill(strip, hit.getADCValues()[0] - pedestal);
 
                 if (plotTimeSeries) {

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTEventInfo.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTEventInfo.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTEventInfo.java	Mon Nov  3 02:54:53 2014
@@ -12,11 +12,12 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.util.Resettable;
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
 import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensorElectrodes;
 import org.lcsim.detector.tracker.silicon.SiTrackerIdentifierHelper;
 import org.lcsim.event.EventHeader;
@@ -171,7 +172,8 @@
 
         ChargeCarrier carrier = ChargeCarrier.getCarrier(_sid_helper.getSideValue(id));
         SiSensorElectrodes electrodes = ((SiSensor) hit.getDetectorElement()).getReadoutElectrodes(carrier);
-        if(!SvtUtils.getInstance().isTopLayer(sensor))
+        //===> if(!SvtUtils.getInstance().isTopLayer(sensor))
+        if(!((HpsSiSensor) sensor).isTopLayer())
             return false;
         return true;
     }

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitPulsePlots.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitPulsePlots.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitPulsePlots.java	Mon Nov  3 02:54:53 2014
@@ -14,10 +14,12 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
 import org.hps.util.Resettable;
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.identifier.IIdentifierHelper;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
@@ -124,17 +126,19 @@
 
     private void fillPlots(RawTrackerHit hit) {
         String sensorName = hit.getDetectorElement().getName();
-        SiSensor sensor = (SiSensor) hit.getDetectorElement();
+        HpsSiSensor sensor = (HpsSiSensor) hit.getDetectorElement();
         int strip = hit.getIdentifierFieldValue("strip");
         short[] adcVal = hit.getADCValues();
-        double ped = HPSSVTCalibrationConstants.getPedestal(sensor, strip);
-        double noise = HPSSVTCalibrationConstants.getNoise(sensor, strip);
+        //===> double ped = HPSSVTCalibrationConstants.getPedestal(sensor, strip);
+        //===> double noise = HPSSVTCalibrationConstants.getNoise(sensor, strip);
         for (int i = 0; i < 6; i++) {
-            double pedSub = (adcVal[i] - ped);
+            //===> double pedSub = (adcVal[i] - ped);
+            double pedSub = (adcVal[i] - sensor.getPedestal(strip, i));
             aida.histogram2D(sensorName + "_AdcVsChan").fill(pedSub, strip);
             //only plot hits above threshold...
 //            if (pedSub / noise > 3 && hasAdjacentHit(hit) && noise < 70)
-            if (hasAdjacentHit(hit) && noise < 100) {
+            //===> if (hasAdjacentHit(hit) && noise < 100) {
+            if (hasAdjacentHit(hit) && sensor.getNoise(strip, i) < 100) {
                 aida.profile1D(sensorName + "_pulse").fill(24.0 * i, pedSub);
             }
         }

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitReconstructionPlots.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitReconstructionPlots.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTHitReconstructionPlots.java	Mon Nov  3 02:54:53 2014
@@ -15,13 +15,14 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.FittedRawTrackerHit;
 import org.hps.util.Resettable;
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.identifier.IIdentifierHelper;
 import org.lcsim.detector.tracker.silicon.DopedSilicon;
 import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiTrackerIdentifierHelper;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
@@ -33,8 +34,6 @@
 /**
  *
  * @author mgraham
- * @version $Id: SVTHitReconstructionPlots.java,v 1.14 2012/05/18 07:41:49 meeg
- * Exp $
  */
 public class SVTHitReconstructionPlots extends Driver implements Resettable {
 
@@ -51,12 +50,12 @@
     IPlotter plotter4;
     IPlotter plotter5;
     IPlotter plotter6;
-    IHistogram1D nrawPlot[][] = new IHistogram1D[2][10];
+    /*IHistogram1D nrawPlot[][] = new IHistogram1D[2][10];
     IHistogram1D nrecoPlot[][] = new IHistogram1D[2][10];
     IHistogram1D nclustPlot[][] = new IHistogram1D[2][10];
     IHistogram1D clusterSizePlot[][] = new IHistogram1D[2][10];
     IHistogram1D clusterAmpPlot[][] = new IHistogram1D[2][10];
-    IHistogram2D clposVsStrip[][] = new IHistogram2D[2][10];
+    IHistogram2D clposVsStrip[][] = new IHistogram2D[2][10];*/
     private Map<String, Integer> sensorRegionMap;
     private String outputPlots = null;
 
@@ -133,6 +132,21 @@
         style8.zAxisStyle().setParameter("scale", "log");
         plotter6.createRegions(5, 4);
 
+       
+       // TODO: Check if this block of code is equivalent to the block commented out below
+       for(SiSensor sensor : sensors){
+    	   
+                int region = computePlotterRegion(sensor);
+                plotter1.region(region).plot(aida.histogram1D(sensor.getName() + "_raw_hits", 10, -0.5, 9.5));
+                plotter3.region(region).plot(aida.histogram1D(sensor.getName() + "_reco_hits", 10, -0.5, 9.5));
+                plotter2.region(region).plot(aida.histogram1D(sensor.getName() + "_cluster_hits", 10, -0.5, 9.5));
+                plotter4.region(region).plot(aida.histogram1D(sensor.getName() + "_cluster_size", 9, 0.5, 9.5));
+                plotter5.region(region).plot(aida.histogram1D(sensor.getName() + "_cluster_amp", 50, 0, 4000.0));
+                ((PlotterRegion) plotter5.region(region)).getPlot().getXAxis().setLabel("Cluster amplitude [ADC counts]");
+                plotter6.region(region).plot(aida.histogram2D(sensor.getName() + "_cluster_vs_strip", 128, 0, 640, 100, -50, 50));
+       }
+        
+        /* ===> 
         for (int module = 0; module < 2; module++) {
             for (int layer = 0; layer < 10; layer++) {
                 SiSensor sensor = SvtUtils.getInstance().getSensor(module, layer);
@@ -152,7 +166,7 @@
                 ((PlotterRegion) plotter5.region(region)).getPlot().getXAxis().setLabel("Cluster amplitude [ADC counts]");
                 plotter6.region(region).plot(clposVsStrip[module][layer]);
             }
-        }
+        } ===> */
 
 //        plotter5.region(0).plot(aida.histogram1D("Tracker_TestRunModule_layer6_module0_sensor0" + "_cluster_amp"));
 //        ((PlotterRegion) plotter5.region(0)).getPlot().getXAxis().setLabel("Cluster amplitude [ADC counts]");
@@ -198,7 +212,8 @@
         for (FittedRawTrackerHit hrth : fittedrawHits) {
             SiSensor sensor = (SiSensor) hrth.getRawTrackerHit().getDetectorElement();
             int layer = hrth.getRawTrackerHit().getLayerNumber();
-            if (!SvtUtils.getInstance().isTopLayer(sensor)) {
+            //===> if (!SvtUtils.getInstance().isTopLayer(sensor)) {
+            if (!((HpsSiSensor) sensor).isTopLayer()) {
                 layersBot[layer - 1]++;
             } else {
                 layersTop[layer - 1]++;

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTMonitoringPlots.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTMonitoringPlots.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTMonitoringPlots.java	Mon Nov  3 02:54:53 2014
@@ -6,12 +6,13 @@
 import hep.aida.IProfile1D;
 
 import java.util.List;
+
 import org.apache.commons.math3.special.Gamma;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.FittedRawTrackerHit;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.geometry.Detector;
@@ -25,8 +26,6 @@
  * to 20.
  *
  * @author Jeremy McCormick <[log in to unmask]>
- * @version $Id: SensorOccupancyPlotsDriver.java,v 1.12 2012/04/13 00:06:55
- * jeremy Exp $
  *
  */
 public class SVTMonitoringPlots extends Driver {
@@ -42,6 +41,9 @@
     private IHistogram2D[][] t0s = new IHistogram2D[2][10];
     private IHistogram2D[][] amps = new IHistogram2D[2][10];
 
+    private static final String subdetectorName = "Tracker";
+    
+    
     public SVTMonitoringPlots() {
     }
 
@@ -67,6 +69,8 @@
     protected void detectorChanged(Detector detector) {
         //plotterFrame = new AIDAFrame();
         //plotterFrame.setTitle("HPS SVT Monitoring");
+
+        List<HpsSiSensor> sensors = detector.getSubdetector(subdetectorName).getDetectorElement().findDescendants(HpsSiSensor.class);
 
         // Setup the plotter.
         IAnalysisFactory fac = aida.analysisFactory();
@@ -102,9 +106,22 @@
         plotter3.style().zAxisStyle().setParameter("scale", "log");
         plotter3.style().zAxisStyle().setVisible(false);
         plotter3.createRegions(4, 5);
+        
+        aida.tree().cd("/");
+        // Setup the occupancy plots.
+        for(HpsSiSensor sensor : sensors){
+        	int module = sensor.getModuleNumber();
+        	int layer = sensor.getLayerNumber(); 
+            int region = computePlotterRegion(layer + 1, module);
+            pedestalShifts[module][layer] = aida.profile1D(sensor.getName() + " Pedestal Shifts", 640, -0.5, 639.5);
+            plotter.region(region).plot(pedestalShifts[module][layer]);
+            t0s[module][layer] = aida.histogram2D(sensor.getName() + " Fitted T0", 640, -0.5, 639.5, 100, -24, 72);
+            plotter2.region(region).plot(t0s[module][layer]);
+            amps[module][layer] = aida.histogram2D(sensor.getName() + " Fitted Amplitude", 640, -0.5, 639.5, 100, 0, 2000);
+           plotter3.region(region).plot(amps[module][layer]);
+        }
 
-        // Setup the occupancy plots.
-        aida.tree().cd("/");
+        /* ===> 
         for (int module = 0; module < 2; module++) {
             for (int layer = 0; layer < 10; layer++) {
                 int region = computePlotterRegion(layer + 1, module);
@@ -117,7 +134,7 @@
                 amps[module][layer] = aida.histogram2D(sensor.getName() + " Fitted Amplitude", 640, -0.5, 639.5, 100, 0, 2000);
                 plotter3.region(region).plot(amps[module][layer]);
             }
-        }
+        } ===> */
         //plotterFrame.pack();
         //plotterFrame.setVisible(true);
     }
@@ -140,8 +157,9 @@
             for (RawTrackerHit hit : rawTrackerHits) {
                 int layer = hit.getIdentifierFieldValue("layer"); // 1-10; axial layers are odd layers; stereo layers are even
                 int module = hit.getIdentifierFieldValue("module"); // 0-1; module number is top or bottom
-                double pedestal = HPSSVTCalibrationConstants.getPedestal((SiSensor) hit.getDetectorElement(), hit.getIdentifierFieldValue("strip"));
-                pedestalShifts[module][layer - 1].fill(hit.getIdentifierFieldValue("strip"), hit.getADCValues()[0] - pedestal);
+                //===> double pedestal = HPSSVTCalibrationConstants.getPedestal((SiSensor) hit.getDetectorElement(), hit.getIdentifierFieldValue("strip"));
+                double pedestal = ((HpsSiSensor) hit.getDetectorElement()).getPedestal(hit.getIdentifierFieldValue("strip"), 0);
+                pedestalShifts[module][layer - 1].fill(hit.getIdentifierFieldValue("strip"), hit.getADCValues()[0]- pedestal);
             }
         }
 
@@ -152,7 +170,8 @@
                 int module = fit.getRawTrackerHit().getIdentifierFieldValue("module"); // 0-1; module number is top or bottom
                 int strip = fit.getRawTrackerHit().getIdentifierFieldValue("strip");
                 if (fit.getShapeFitParameters().getChiProb() > Gamma.regularizedGammaQ(4, 5)) {
-                    double noise = HPSSVTCalibrationConstants.getNoise((SiSensor) fit.getRawTrackerHit().getDetectorElement(), strip);
+                    //===> double noise = HPSSVTCalibrationConstants.getNoise((SiSensor) fit.getRawTrackerHit().getDetectorElement(), strip);
+                    double noise = ((HpsSiSensor) fit.getRawTrackerHit().getDetectorElement()).getNoise(strip, 0);
                     if (fit.getAmp() > 4 * noise) {
                         t0s[module][layer - 1].fill(strip, fit.getT0());
                     }

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTPulseFitPlots.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTPulseFitPlots.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTPulseFitPlots.java	Mon Nov  3 02:54:53 2014
@@ -11,12 +11,14 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
 import org.hps.conditions.deprecated.HPSSVTConstants;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.FittedRawTrackerHit;
 import org.hps.util.Resettable;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.geometry.Detector;
 import org.lcsim.util.Driver;
@@ -25,8 +27,6 @@
 /**
  *
  * @author mgraham
- * @version $Id: SVTHitReconstructionPlots.java,v 1.14 2012/05/18 07:41:49 meeg
- * Exp $
  */
 public class SVTPulseFitPlots extends Driver implements Resettable {
 
@@ -47,7 +47,11 @@
     private IHistogram2D[][] shape = new IHistogram2D[2][10];
 //    private IHistogram2D shape;
 
+    private static final String subdetectorName = "Tracker";
+    
     protected void detectorChanged(Detector detector) {
+
+        List<HpsSiSensor> sensors = detector.getSubdetector(subdetectorName).getDetectorElement().findDescendants(HpsSiSensor.class);
 
         aida.tree().cd("/");
 
@@ -92,6 +96,26 @@
         plotter5.style().zAxisStyle().setVisible(false);
         plotter5.createRegions(4, 5);
 
+        
+        // Setup the occupancy plots.
+        for(HpsSiSensor sensor : sensors){
+        	int module = sensor.getModuleNumber();
+        	int layer = sensor.getLayerNumber(); 
+            int region = computePlotterRegion(layer + 1, module);
+            t0[module][layer] = aida.histogram1D(sensor.getName() + "_timing", 50, -100, 100.0);
+            plotter.region(region).plot(t0[module][layer]);
+            amp[module][layer] = aida.histogram1D(sensor.getName() + "_amplitude", 50, 0, 2000.0);
+            plotter2.region(region).plot(amp[module][layer]);
+            chiprob[module][layer] = aida.histogram1D(sensor.getName() + "_chiprob", 100, 0, 1.0);
+            plotter3.region(region).plot(chiprob[module][layer]);
+            t0a[module][layer] = aida.histogram2D(sensor.getName() + " A vs. T0", 100, -100, 100, 100, 0, 2000);
+            plotter4.region(region).plot(t0a[module][layer]);
+            shape[module][layer] = aida.histogram2D(sensor.getName() + " Shape", 200, -1, 3, 200, -0.5, 2);
+            plotter5.region(region).plot(shape[module][layer]);
+        }
+        
+
+        /* ==> 
         for (int module = 0; module < 2; module++) {
             for (int layer = 0; layer < 10; layer++) {
                 SiSensor sensor = SvtUtils.getInstance().getSensor(module, layer);
@@ -108,7 +132,7 @@
                 plotter5.region(region).plot(shape[module][layer]);
 
             }
-        }
+        } ===> */
     }
 
     public SVTPulseFitPlots() {
@@ -126,7 +150,7 @@
         ++eventCount;
         List<FittedRawTrackerHit> fittedrawHits = event.get(FittedRawTrackerHit.class, fittedTrackerHitCollectionName);
         for (FittedRawTrackerHit fit : fittedrawHits) {
-            SiSensor sensor = (SiSensor) fit.getRawTrackerHit().getDetectorElement();
+            HpsSiSensor sensor = (HpsSiSensor) fit.getRawTrackerHit().getDetectorElement();
             int strip = fit.getRawTrackerHit().getIdentifierFieldValue("strip");
             int layer = fit.getRawTrackerHit().getIdentifierFieldValue("layer"); // 1-10; axial layers are odd layers; stereo layers are even
             int module = fit.getRawTrackerHit().getIdentifierFieldValue("module"); // 0-1; module number is top or bottom
@@ -138,14 +162,18 @@
             aida.histogram1D(sensorName + "_amplitude").fill(fittedAmp);
             aida.histogram1D(sensorName + "_chiprob").fill(fit.getShapeFitParameters().getChiProb());
 
-            double noise = HPSSVTCalibrationConstants.getNoise(sensor, strip);
-            double pedestal = HPSSVTCalibrationConstants.getPedestal(sensor, strip);
-            double tp = HPSSVTCalibrationConstants.getTShaping(sensor, strip);
-
+            //===> double noise = HPSSVTCalibrationConstants.getNoise(sensor, strip);
+            //===> double pedestal = HPSSVTCalibrationConstants.getPedestal(sensor, strip);
+            //===> double tp = HPSSVTCalibrationConstants.getTShaping(sensor, strip);
+            double tp = sensor.getShapeFitParameters(strip)[HpsSiSensor.TP_INDEX];
+            
             t0a[module][layer - 1].fill(fit.getT0(), fit.getAmp());
-            if (fit.getAmp() > 4 * noise) {
+            //===> if (fit.getAmp() > 4 * noise) {
+            if (fit.getAmp() > 4 * sensor.getNoise(strip, 0)) {
                 for (int i = 0; i < fit.getRawTrackerHit().getADCValues().length; i++) {
-                    shape[module][layer - 1].fill((i * HPSSVTConstants.SAMPLING_INTERVAL - fit.getT0()) / tp, (fit.getRawTrackerHit().getADCValues()[i] - pedestal) / fit.getAmp());
+                    //====> shape[module][layer - 1].fill((i * HPSSVTConstants.SAMPLING_INTERVAL - fit.getT0()) / tp, (fit.getRawTrackerHit().getADCValues()[i] - pedestal) / fit.getAmp());
+                    shape[module][layer - 1].fill((i * HPSSVTConstants.SAMPLING_INTERVAL - fit.getT0()) / tp,
+                    		(fit.getRawTrackerHit().getADCValues()[i] - sensor.getPedestal(strip, i)) / fit.getAmp());
 //                    shape.fill((i * HPSSVTConstants.SAMPLE_INTERVAL - hrth.getT0()) / tp, (hrth.getRawTrackerHit().getADCValues()[i] - pedestal) / hrth.getAmp());
                 }
             }

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTSimpleEventDisplay.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTSimpleEventDisplay.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/SVTSimpleEventDisplay.java	Mon Nov  3 02:54:53 2014
@@ -5,10 +5,15 @@
 import hep.aida.IPlotterFactory;
 //import hep.aida.jfree.plot.style.DefaultHistogram1DStyle;
 
+
+
 import java.util.List;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
+
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.util.Resettable;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.fit.helicaltrack.HelicalTrackHit;
@@ -22,7 +27,6 @@
  * This class can be configured to reset after each event for use as an
  * event display by calling {@link #setSingleEvent(boolean)}.
  * 
- * @version $Id: SVTSimpleEventDisplay.java,v 1.13 2013/11/06 19:19:55 jeremy Exp $
  */
 public class SVTSimpleEventDisplay extends Driver implements Resettable {
 
@@ -53,6 +57,11 @@
      */
     private boolean singleEvent = true;
 
+    /*
+     * Subdetector Name 
+     */
+    private static final String subdetectorName = "Tracker";
+
     /**
      * Class constructor.
      */
@@ -117,12 +126,14 @@
      * Configure this Driver for a new Detector, e.g. setup the plots and show them.
      */
     protected void detectorChanged(Detector detector) {
+        List<HpsSiSensor> sensors = detector.getSubdetector(subdetectorName).getDetectorElement().findDescendants(HpsSiSensor.class);
+
         createPlotterFactory();
         setupRawTrackerHitPlots();
         setupTrackerHitPlots();
         setupHelicalTrackHitPlots();
         setupHitCountPlots();
-        setupOccupancyPlots();
+        setupOccupancyPlots(sensors);
         showPlots();
     }
 
@@ -180,9 +191,22 @@
         plotter4.show();
     }
 
-    private void setupOccupancyPlots() {
+    private void setupOccupancyPlots(List<HpsSiSensor> sensors) {
         aida.tree().cd("/");
-        for (int module = 0; module < 2; module++) {
+        
+        for(HpsSiSensor sensor : sensors){
+        	int module = sensor.getModuleNumber();
+        	int layer = sensor.getLayerNumber(); 
+            int region = computePlotterRegion(layer + 1, module);
+            rth[module][layer] = aida.histogram1D(sensor.getName() + " RawTrackerHits", 640, -0.5, 639.5);
+            plotter.region(region).plot(rth[module][layer]);
+            th[module][layer] = aida.histogram1D(sensor.getName() + " TrackerHits", 640, -0.5, 639.5);
+            plotter2.region(region).plot(th[module][layer]);
+            hth[module][layer] = aida.histogram1D(sensor.getName() + " HelicalTrackHits", 640, -0.5, 639.5);
+            plotter3.region(region).plot(hth[module][layer]);
+        }
+  
+        /* ===> for (int module = 0; module < 2; module++) {
             for (int layer = 0; layer < 10; layer++) {
                 int region = computePlotterRegion(layer + 1, module);
                 rth[module][layer] = aida.histogram1D(SvtUtils.getInstance().getSensor(module, layer).getName() + " RawTrackerHits", 640, -0.5, 639.5);
@@ -192,7 +216,7 @@
                 hth[module][layer] = aida.histogram1D(SvtUtils.getInstance().getSensor(module, layer).getName() + " HelicalTrackHits", 640, -0.5, 639.5);
                 plotter3.region(region).plot(hth[module][layer]);
             }
-        }
+        } ===> */
     }
 
     /**

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackTimePlots.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackTimePlots.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackTimePlots.java	Mon Nov  3 02:54:53 2014
@@ -9,13 +9,11 @@
 
 import java.util.List;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.readout.ecal.TriggerData;
 import org.hps.util.Resettable;
-import org.lcsim.detector.identifier.IIdentifier;
-import org.lcsim.detector.identifier.IIdentifierHelper;
 import org.lcsim.detector.tracker.silicon.DopedSilicon;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.Track;
 import org.lcsim.event.TrackerHit;
@@ -29,8 +27,6 @@
 /**
  *
  * @author meeg
- * @version $Id: SVTHitReconstructionPlots.java,v 1.14 2012/05/18 07:41:49 meeg
- * Exp $
  */
 public class TrackTimePlots extends Driver implements Resettable {
 
@@ -49,12 +45,16 @@
     private IHistogram1D[] trackTimeRange = new IHistogram1D[2];
     private IHistogram2D[] trackTimeMinMax = new IHistogram2D[2];
 
+    private static final String subdetectorName = "Tracker";
+
     @Override
     protected void detectorChanged(Detector detector) {
     	//plotterFrame = new AIDAFrame();
         //plotterFrame.setTitle("HPS SVT Track Time Plots");
 
         aida.tree().cd("/");
+
+        List<HpsSiSensor> sensors = detector.getSubdetector(subdetectorName).getDetectorElement().findDescendants(HpsSiSensor.class);
 
         IPlotterFactory fac = aida.analysisFactory().createPlotterFactory();
 
@@ -120,7 +120,59 @@
         style.dataStyle().errorBarStyle().setVisible(false);
         plotter7.createRegions(2, 2);
 
+        
+        for(HpsSiSensor sensor : sensors){
+        	int module = sensor.getModuleNumber();
+        	int layer = sensor.getLayerNumber(); 
+            int region = computePlotterRegion(layer + 1, module);
+        
+            t0[module][layer] = aida.histogram1D(sensor.getName() + "_timing", 75, -50, 100.0);
+            plotter.region(region).plot(t0[module][layer]);
+            ((PlotterRegion) plotter.region(region)).getPlot().getXAxis().setLabel("Hit time [ns]");
+            trackHitT0[module][layer] = aida.histogram1D(sensor.getName() + "_trackHit_timing", 75, -50, 4000.0);
+            plotter3.region(region).plot(trackHitT0[module][layer]);
+            ((PlotterRegion) plotter3.region(region)).getPlot().getXAxis().setLabel("Hit time [ns]");
+            trackHitDt[module][layer] = aida.histogram1D(sensor.getName() + "_trackHit_dt", 50, -20, 20.0);
+            plotter4.region(region).plot(trackHitDt[module][layer]);
+            ((PlotterRegion) plotter4.region(region)).getPlot().getXAxis().setLabel("Hit time residual [ns]");
+            trackHit2D[module][layer] = aida.histogram2D(sensor.getName() + "_trackHit_dt_2D", 75, -50, 100.0, 50, -20, 20.0);
+            plotter5.region(region).plot(trackHit2D[module][layer]);
+            ((PlotterRegion) plotter5.region(region)).getPlot().getXAxis().setLabel("Track time [ns]");
+            ((PlotterRegion) plotter5.region(region)).getPlot().getYAxis().setLabel("Hit time [ns]");
+            trackHitDtChan[module][layer] = aida.histogram2D(sensor.getName() + "_trackHit_dt_chan", 200, -20, 20, 50, -20, 20.0);
+            plotter6.region(region).plot(trackHitDtChan[module][layer]);
+            ((PlotterRegion) plotter6.region(region)).getPlot().getXAxis().setLabel("Hit position [mm]");
+            ((PlotterRegion) plotter6.region(region)).getPlot().getYAxis().setLabel("Hit time residual [ns]");
+        }
+        	
         for (int module = 0; module < 2; module++) {
+        
+            trackT0[module] = aida.histogram1D((module == 0 ? "Top" : "Bottom") + " Track Time", 75, -50, 100.0);
+            plotter2.region(module).plot(trackT0[module]);
+            ((PlotterRegion) plotter2.region(module)).getPlot().getXAxis().setLabel("Track time [ns]");
+            trackTrigTime[module] = aida.histogram2D((module == 0 ? "Top" : "Bottom") + " Track Time vs. Trig Time", 75, -50, 100.0, 33, -1, 32);
+            plotter2.region(module + 2).plot(trackTrigTime[module]);
+            ((PlotterRegion) plotter2.region(module+2)).getPlot().getXAxis().setLabel("Track time [ns]");
+            ((PlotterRegion) plotter2.region(module+2)).getPlot().getYAxis().setLabel("Trigger time [clocks]");
+            style = plotter2.region(module + 2).style();
+            style.setParameter("hist2DStyle", "colorMap");
+            style.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
+            style.zAxisStyle().setParameter("scale", "log");
+
+            trackTimeRange[module] = aida.histogram1D((module == 0 ? "Top" : "Bottom") + " Track Hit Time Range", 75, 0, 30.0);
+            plotter7.region(module).plot(trackTimeRange[module]);
+            ((PlotterRegion) plotter7.region(module)).getPlot().getXAxis().setLabel("Track time range [ns]");
+            trackTimeMinMax[module] = aida.histogram2D((module == 0 ? "Top" : "Bottom") + " First and Last Track Hit Times", 75, -50, 100.0, 75, -50, 100.0);
+            plotter7.region(module + 2).plot(trackTimeMinMax[module]);
+            ((PlotterRegion) plotter7.region(module+2)).getPlot().getXAxis().setLabel("First track hit time [ns]");
+            ((PlotterRegion) plotter7.region(module+2)).getPlot().getYAxis().setLabel("Last track hit time [ns]");
+            style = plotter7.region(module + 2).style();
+            style.setParameter("hist2DStyle", "colorMap");
+            style.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
+            style.zAxisStyle().setParameter("scale", "log");
+        }
+        	
+       /* ===> for (int module = 0; module < 2; module++) {
             for (int layer = 0; layer < 10; layer++) {
                 SiSensor sensor = SvtUtils.getInstance().getSensor(module, layer);
                 int region = computePlotterRegion(layer + 1, module);
@@ -165,7 +217,7 @@
             style.setParameter("hist2DStyle", "colorMap");
             style.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
             style.zAxisStyle().setParameter("scale", "log");
-        }
+        } ===> */
 //        shape = aida.histogram2D("Shape", 200, -1, 3, 200, -0.5, 2);
 //        plotter5.region(0).plot(shape);
 
@@ -225,12 +277,14 @@
             }
         }
 
-        IIdentifierHelper helper = SvtUtils.getInstance().getHelper();
+        //===> IIdentifierHelper helper = SvtUtils.getInstance().getHelper();
         List<SiTrackerHitStrip1D> hits = event.get(SiTrackerHitStrip1D.class, hitCollection);
         for (SiTrackerHitStrip1D hit : hits) {
-            IIdentifier id = hit.getSensor().getIdentifier();
-            int layer = helper.getValue(id, "layer");
-            int module = helper.getValue(id, "module");
+            //===> IIdentifier id = hit.getSensor().getIdentifier();
+            //===> int layer = helper.getValue(id, "layer");
+             int layer = ((HpsSiSensor) hit.getSensor()).getLayerNumber(); 
+             int module = ((HpsSiSensor) hit.getSensor()).getModuleNumber(); 
+            //===> int module = helper.getValue(id, "module");
 //            System.out.format("%d, %d, %d\n",hit.getCellID(),layer,module);
             t0[module][layer - 1].fill(hit.getTime());
         }

Modified: java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackingReconstructionPlots.java
 =============================================================================
--- java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackingReconstructionPlots.java	(original)
+++ java/trunk/monitoring-drivers/src/main/java/org/hps/monitoring/drivers/svt/TrackingReconstructionPlots.java	Mon Nov  3 02:54:53 2014
@@ -15,9 +15,9 @@
 import java.util.logging.Logger;
 
 import org.hps.conditions.deprecated.BeamlineConstants;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.ecal.HPSEcalCluster;
 import org.hps.recon.tracking.DumbShaperFit;
 import org.hps.recon.tracking.HelixConverter;
@@ -27,6 +27,7 @@
 import org.hps.recon.tracking.TrackUtils;
 import org.hps.util.Resettable;
 import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.LCIOParameters.ParameterName;
 import org.lcsim.event.RawTrackerHit;
@@ -615,8 +616,9 @@
 //            htc.resetTrackDirection();
             double x = htc.getPosition()[0];
             double y = htc.getPosition()[1];
-            SiSensor sensor = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
-            if (SvtUtils.getInstance().isTopLayer(sensor)) {
+            HpsSiSensor sensor = ((HpsSiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
+            //===> if (SvtUtils.getInstance().isTopLayer(sensor)) {
+            if (sensor.isTopLayer()) {
                 layersTop[htc.Layer() - 1]++;
                 Hep3Vector sensorPos = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement()).getGeometry().getPosition();
                 if (htc.Layer() == 1) {
@@ -791,10 +793,10 @@
                     aida.histogram1D(modNum + "Residual Y(mm) Bottom").fill(htcross.getCorrectedPosition().z() - zTr);//these hits should be rotated track hits already
 
                 }
-                SiSensor sensor = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
+                HpsSiSensor sensor = ((HpsSiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
                 double x = htcross.getCorrectedPosition().y();
                 double y = htcross.getCorrectedPosition().z();
-                if (SvtUtils.getInstance().isTopLayer(sensor)) {
+                if (sensor.isTopLayer()) {
                     layersTop[htc.Layer() - 1]++;
                     Hep3Vector sensorPos = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement()).getGeometry().getPosition();
                     if (htc.Layer() == 1) {
@@ -833,8 +835,9 @@
                 for (HelicalTrackStrip hts : htcross.getStrips()) {
                     double clusterSum = 0;
                     for (RawTrackerHit rawHit : (List<RawTrackerHit>) hts.rawhits()) {
-                        ChannelConstants constants = HPSSVTCalibrationConstants.getChannelConstants((SiSensor) rawHit.getDetectorElement(), rawHit.getIdentifierFieldValue("strip"));
-                        for (ShapeFitParameters fit : _shaper.fitShape(rawHit, constants)) {
+                        //===> ChannelConstants constants = HPSSVTCalibrationConstants.getChannelConstants((SiSensor) rawHit.getDetectorElement(), rawHit.getIdentifierFieldValue("strip"));
+                    	//===>for (ShapeFitParameters fit : _shaper.fitShape(rawHit, constants)) {
+                    	for (ShapeFitParameters fit : _shaper.fitShape(rawHit)) {
                             double amp = fit.getAmp();
                             clusterSum += amp;
                             aida.histogram1D("Amp (HitOnTrack)").fill(amp);

Modified: java/trunk/recon/src/main/java/org/hps/recon/filtering/InTimeHitsFilter.java
 =============================================================================
--- java/trunk/recon/src/main/java/org/hps/recon/filtering/InTimeHitsFilter.java	(original)
+++ java/trunk/recon/src/main/java/org/hps/recon/filtering/InTimeHitsFilter.java	Mon Nov  3 02:54:53 2014
@@ -2,10 +2,13 @@
 
 import java.util.List;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.FittedRawTrackerHit;
+
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensorElectrodes;
 import org.lcsim.detector.tracker.silicon.SiTrackerIdentifierHelper;
@@ -13,9 +16,8 @@
 import org.lcsim.event.RawTrackerHit;
 
 /**
-
- @author mgraham
- @version $Id:
+ *
+ * @author mgraham
  */
 public class InTimeHitsFilter extends EventReconFilter{
    
@@ -81,13 +83,14 @@
     }
 
     private boolean isHitOnTop(RawTrackerHit hit){
-        SiSensor sensor=(SiSensor) hit.getDetectorElement();
+        HpsSiSensor sensor=(HpsSiSensor) hit.getDetectorElement();
         IIdentifier id=hit.getIdentifier();
         SiTrackerIdentifierHelper _sid_helper=(SiTrackerIdentifierHelper) sensor.getIdentifierHelper();
 
         ChargeCarrier carrier=ChargeCarrier.getCarrier(_sid_helper.getSideValue(id));
         SiSensorElectrodes electrodes=((SiSensor) hit.getDetectorElement()).getReadoutElectrodes(carrier);
-        if(!SvtUtils.getInstance().isTopLayer(sensor))
+        //===> if(!SvtUtils.getInstance().isTopLayer(sensor))
+        if(!sensor.isTopLayer())
             return false;
         return true;
     }

Modified: java/trunk/recon/src/main/java/org/hps/recon/filtering/MinimumHitsFilter.java
 =============================================================================
--- java/trunk/recon/src/main/java/org/hps/recon/filtering/MinimumHitsFilter.java	(original)
+++ java/trunk/recon/src/main/java/org/hps/recon/filtering/MinimumHitsFilter.java	Mon Nov  3 02:54:53 2014
@@ -2,9 +2,11 @@
 
 import java.util.List;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensorElectrodes;
 import org.lcsim.detector.tracker.silicon.SiTrackerIdentifierHelper;
@@ -12,9 +14,8 @@
 import org.lcsim.event.RawTrackerHit;
 
 /**
-
- @author mgraham
- @version $Id:
+ *
+ * @author mgraham
  */
 public class MinimumHitsFilter extends EventReconFilter{
   
@@ -60,13 +61,14 @@
 
 
     private boolean isHitOnTop(RawTrackerHit hit){
-        SiSensor sensor=(SiSensor) hit.getDetectorElement();
+    	HpsSiSensor sensor=(HpsSiSensor) hit.getDetectorElement();
         IIdentifier id=hit.getIdentifier();
         SiTrackerIdentifierHelper _sid_helper=(SiTrackerIdentifierHelper) sensor.getIdentifierHelper();
 
         ChargeCarrier carrier=ChargeCarrier.getCarrier(_sid_helper.getSideValue(id));
         SiSensorElectrodes electrodes=((SiSensor) hit.getDetectorElement()).getReadoutElectrodes(carrier);
-        if(!SvtUtils.getInstance().isTopLayer(sensor))
+        //===> if(!SvtUtils.getInstance().isTopLayer(sensor))
+        if(!sensor.isTopLayer())
             return false;
         return true;
     }

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/analysis/StarterAnalysis.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/analysis/StarterAnalysis.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/analysis/StarterAnalysis.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,13 +1,13 @@
 <!-- 
   Example steering file for analysis.
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: StarterAnalysis.lcsim,v 1.1 2013/03/20 01:46:26 meeg Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>   
+        <driver name="ConditionsDriver" />
+        <driver name="SvtSensorSetup" />
 
         <driver name="StarterAnalysisDriver"/>   
 
@@ -18,8 +18,9 @@
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver> 
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver"/>
 
         <driver name="StarterAnalysisDriver" type="org.hps.analysis.examples.StarterAnalysisDriver">
         </driver>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutNoPileup.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutNoPileup.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutNoPileup.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,17 +1,17 @@
 <!-- 
   Execute trigger+readout simulation without pileup (event by event) and write the results as an LCIO file.
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: HPS2014ReadoutNoPileup.lcsim,v 1.4 2013/08/07 23:37:30 meeg Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">       
     <control>
-        <printInputFiles>true</printInputFiles>
-        <printDriversDetailed>true</printDriversDetailed>
+        <printInputFiles>false</printInputFiles>
+        <printDriversDetailed>false</printDriversDetailed>
     </control>    
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver" />
+        <driver name="SvtSensorSetup" />
         <driver name="EcalEdepToTriggerConverterDriver"/>
         <driver name="EcalReadoutConverterDriver"/>
         <driver name="EcalTriggerClusterer"/>
@@ -24,8 +24,8 @@
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-        </driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="EcalEdepToTriggerConverterDriver" type="org.hps.recon.ecal.EcalEdepToTriggerConverterDriver">
             <readoutCollection>EcalReadoutAnalogHits</readoutCollection>
             <applyBadCrystalMap>false</applyBadCrystalMap>
@@ -50,7 +50,6 @@
             <pairCoincidence>0</pairCoincidence>
             <lcioFile>${outputFile}.slcio</lcioFile>
         </driver>	
-        
         <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
             <noPileup>true</noPileup>
         </driver>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToEvio.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToEvio.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToEvio.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,79 +1,64 @@
 <!-- 
   Execute full trigger+readout simulation and write the results as an EVIO file.
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: HPS2014ReadoutToEvio.lcsim,v 1.2 2013/03/01 23:22:24 meeg Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
+    <control>
+        <printInputFiles>false</printInputFiles>
+        <printDriversDetailed>false</printDriversDetailed>
+    </control>    
     <execute>
         <driver name="EventMarkerDriver"/>
-        
-        <driver name="CalibrationDriver"/>   
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="EcalReadout"/>
         <driver name="EcalConverter"/>
         <driver name="EcalClusterer"/>
         <driver name="EcalTrigger"/>
-        
         <driver name="SimpleSVTReadout"/>
-
         <driver name="TestRunReconToEvio"/>
-
-        <!--<driver name="AidaSaveDriver"/>-->
-
         <driver name="ClockDriver"/>
         <driver name="CleanupDriver"/>
     </execute> 
-
     <drivers>
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver> 
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-<!--            <runNumber>1351</runNumber>    -->
-        </driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="TestRunReconToEvio" type="org.hps.evio.TestRunTriggeredReconToEvio">
             <evioOutputFile>${outputFile}.evio</evioOutputFile>
         </driver>
-			
         <driver name="EcalReadout" type="org.hps.readout.ecal.FADCEcalReadoutDriver">
             <coincidenceWindow>1</coincidenceWindow>
             <ecalName>Ecal</ecalName>
             <ecalCollectionName>EcalHits</ecalCollectionName>
             <ecalRawCollectionName>EcalRawHits</ecalRawCollectionName>
             <addNoise>true</addNoise>
-<!--            <fixedGain>0.15</fixedGain>-->
-<!--            <debug>true</debug>-->
+            <!--            <fixedGain>0.15</fixedGain>-->
+            <!--            <debug>true</debug>-->
         </driver>
-
         <driver name="EcalConverter" type="org.hps.recon.ecal.EcalRawConverterDriver">
             <rawCollectionName>EcalRawHits</rawCollectionName>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
             <!--<gain>0.15</gain>-->
             <applyBadCrystalMap>false</applyBadCrystalMap>
             <use2014Gain>true</use2014Gain>
-<!--            <debug>true</debug>-->
+            <!--            <debug>true</debug>-->
         </driver>	
-
         <driver name="EcalClusterer" type="org.hps.recon.ecal.GTPEcalClusterer">
             <ecalName>Ecal</ecalName>
             <clusterWindow>1</clusterWindow>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
         </driver>
-
         <driver name="EcalTrigger" type="org.hps.readout.ecal.FADCTriggerDriver">
             <clusterCollectionName>EcalClusters</clusterCollectionName>
             <deadTime>10</deadTime>
             <pairCoincidence>2</pairCoincidence>
             <outputFileName>${outputFile}.triggers</outputFileName>
         </driver>	
-        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
-        </driver>
-
-<!--        <driver name="AidaSaveDriver"
-                        type="org.lcsim.job.AidaSaveDriver">
-            <outputFileName>${outputFile}_triggerPlots</outputFileName>
-        </driver>-->
-
+        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout" />
         <driver name="ClockDriver" type="org.hps.readout.ecal.ClockDriver"/>
         <driver name="CleanupDriver" type="org.lcsim.recon.tracking.digitization.sisim.config.ReadoutCleanupDriver">
             <collectionNames>TrackerHits</collectionNames>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToLcio.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToLcio.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014ReadoutToLcio.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,25 +1,24 @@
 <!-- 
   Execute full trigger+readout simulation and write the results as an LCIO file.
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: HPS2014ReadoutToLcio.lcsim,v 1.2 2013/03/01 23:22:24 meeg Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
+    <control>
+        <printInputFiles>false</printInputFiles>
+        <printDriversDetailed>false</printDriversDetailed>
+    </control>    
     <execute>
         <driver name="EventMarkerDriver"/>
-        
-        <driver name="CalibrationDriver"/>   
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="EcalReadout"/>
         <driver name="EcalConverter"/>
         <driver name="EcalClusterer"/>
         <driver name="EcalTrigger"/>
-        
         <driver name="SimpleSVTReadout"/>
-
         <driver name="TestRunReconToLcio"/>
-
         <driver name="AidaSaveDriver"/>
-
         <driver name="ClockDriver"/>
         <driver name="CleanupDriver"/>
     </execute> 
@@ -28,52 +27,43 @@
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver> 
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-<!--            <runNumber>1351</runNumber>    -->
-        </driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="TestRunReconToLcio" type="org.hps.evio.TestRunTriggeredReconToLcio">
             <outputFile>${outputFile}.slcio</outputFile>
         </driver>
-			
         <driver name="EcalReadout" type="org.hps.readout.ecal.FADCEcalReadoutDriver">
             <coincidenceWindow>1</coincidenceWindow>
             <ecalName>Ecal</ecalName>
             <ecalCollectionName>EcalHits</ecalCollectionName>
             <ecalRawCollectionName>EcalRawHits</ecalRawCollectionName>
             <addNoise>true</addNoise>
-<!--            <fixedGain>0.15</fixedGain>-->
-<!--            <debug>true</debug>-->
+            <!-- <fixedGain>0.15</fixedGain> -->
+            <!-- <debug>true</debug> -->
         </driver>
-
         <driver name="EcalConverter" type="org.hps.recon.ecal.EcalRawConverterDriver">
             <rawCollectionName>EcalRawHits</rawCollectionName>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
-<!--            <gain>0.15</gain>-->
+            <!--  <gain>0.15</gain> -->
             <applyBadCrystalMap>false</applyBadCrystalMap>
             <use2014Gain>true</use2014Gain>
-<!--            <debug>true</debug>-->
+            <!--  <debug>true</debug> -->
         </driver>	
-
         <driver name="EcalClusterer" type="org.hps.recon.ecal.GTPEcalClusterer">
             <ecalName>Ecal</ecalName>
             <clusterWindow>1</clusterWindow>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
         </driver>
-
         <driver name="EcalTrigger" type="org.hps.readout.ecal.FADCTriggerDriver">
             <clusterCollectionName>EcalClusters</clusterCollectionName>
             <deadTime>10</deadTime>
             <pairCoincidence>2</pairCoincidence>
             <outputFileName>${outputFile}.triggers</outputFileName>
         </driver>	
-        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
-        </driver>
-
-        <driver name="AidaSaveDriver"
-                type="org.lcsim.job.AidaSaveDriver">
+        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout" />
+        <driver name="AidaSaveDriver" type="org.lcsim.job.AidaSaveDriver">
             <outputFileName>${outputFile}_triggerPlots</outputFileName>
         </driver>
-
         <driver name="ClockDriver" type="org.hps.readout.ecal.ClockDriver"/>
         <driver name="CleanupDriver" type="org.lcsim.recon.tracking.digitization.sisim.config.ReadoutCleanupDriver">
             <collectionNames>TrackerHits</collectionNames>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014TruthReadoutToLcio.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014TruthReadoutToLcio.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPS2014TruthReadoutToLcio.lcsim	Mon Nov  3 02:54:53 2014
@@ -5,21 +5,21 @@
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
+    <control>
+        <printInputFiles>false</printInputFiles>
+        <printDriversDetailed>false</printDriversDetailed>
+    </control>    
     <execute>
         <driver name="EventMarkerDriver"/>
-        
-        <driver name="CalibrationDriver"/>   
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="EcalReadout"/>
         <driver name="EcalConverter"/>
         <driver name="EcalClusterer"/>
         <driver name="EcalTrigger"/>
-        
         <driver name="SimpleSVTReadout"/>
-
         <driver name="TestRunReconToLcio"/>
-
         <driver name="AidaSaveDriver"/>
-
         <driver name="ClockDriver"/>
         <driver name="CleanupDriver"/>
     </execute> 
@@ -28,39 +28,34 @@
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver> 
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-<!--            <runNumber>1351</runNumber>    -->
-        </driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="TestRunReconToLcio" type="org.hps.evio.TestRunTriggeredReconToLcio">
             <outputFile>${outputFile}.slcio</outputFile>
             <rejectBackground>true</rejectBackground>
         </driver>
-			
         <driver name="EcalReadout" type="org.hps.readout.ecal.FADCEcalReadoutDriver">
             <coincidenceWindow>1</coincidenceWindow>
             <ecalName>Ecal</ecalName>
             <ecalCollectionName>EcalHits</ecalCollectionName>
             <ecalRawCollectionName>EcalRawHits</ecalRawCollectionName>
             <addNoise>true</addNoise>
-<!--            <fixedGain>0.15</fixedGain>-->
-<!--            <debug>true</debug>-->
+            <!--            <fixedGain>0.15</fixedGain>-->
+            <!--            <debug>true</debug>-->
         </driver>
-
         <driver name="EcalConverter" type="org.hps.recon.ecal.EcalRawConverterDriver">
             <rawCollectionName>EcalRawHits</rawCollectionName>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
-<!--            <gain>0.15</gain>-->
+            <!--            <gain>0.15</gain>-->
             <applyBadCrystalMap>false</applyBadCrystalMap>
             <use2014Gain>true</use2014Gain>
-<!--            <debug>true</debug>-->
+            <!--            <debug>true</debug>-->
         </driver>	
-
         <driver name="EcalClusterer" type="org.hps.recon.ecal.GTPEcalClusterer">
             <ecalName>Ecal</ecalName>
             <clusterWindow>1</clusterWindow>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
         </driver>
-
         <driver name="EcalTrigger" type="org.hps.readout.ecal.FADCTriggerDriver">
             <clusterCollectionName>EcalClusters</clusterCollectionName>
             <deadTime>10</deadTime>
@@ -69,12 +64,10 @@
         </driver>	
         <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
         </driver>
-
         <driver name="AidaSaveDriver"
-                        type="org.lcsim.job.AidaSaveDriver">
+                type="org.lcsim.job.AidaSaveDriver">
             <outputFileName>${outputFile}_triggerPlots</outputFileName>
         </driver>
-
         <driver name="ClockDriver" type="org.hps.readout.ecal.ClockDriver"/>
         <driver name="CleanupDriver" type="org.lcsim.recon.tracking.digitization.sisim.config.ReadoutCleanupDriver">
             <collectionNames>TrackerHits</collectionNames>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPSTrackingDefaults.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPSTrackingDefaults.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/HPSTrackingDefaults.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,53 +1,40 @@
 
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
-    
     <control>
-        <printInputFiles>true</printInputFiles>
-        <printDriversDetailed>true</printDriversDetailed>
+        <printInputFiles>false</printInputFiles>
+        <printDriversDetailed>false</printDriversDetailed>
     </control>
-    
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="TrackerDigiDriver"/>
         <driver name="HelicalTrackHitDriver"/>
         <driver name="TrackerReconDriver"/>
         <driver name="LCIOWriter"/>
     </execute>
-    
     <drivers>
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-<!--            <runNumber>1351</runNumber>    -->
-        </driver>
-
-        <driver name="EventMarkerDriver"
-                type="org.lcsim.job.EventMarkerDriver">
+        <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>
-    
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="TrackerDigiDriver" type="org.hps.recon.tracking.SimpleTrackerDigiDriver">
 <!--            <dropBadChannels>true</dropBadChannels>-->
             <debug>false</debug>
         </driver>
-              
-        <driver name="HelicalTrackHitDriver"
-                type="org.hps.recon.tracking.HelicalTrackHitDriver">
+        <driver name="HelicalTrackHitDriver" type="org.hps.recon.tracking.HelicalTrackHitDriver">
             <debug>false</debug>
             <maxSeperation>20.0</maxSeperation>
             <tolerance>1.0</tolerance>
         </driver>
-        
-        <driver name="TrackerReconDriver"
-                type="org.hps.recon.tracking.TrackerReconDriver">
+        <driver name="TrackerReconDriver" type="org.hps.recon.tracking.TrackerReconDriver">
             <debug>false</debug>
-            <strategyResource>/org/hps/recon/tracking/strategies/HPS-Test-4pt1.xml</strategyResource>
+            <strategyResource>HPS-Full.xml</strategyResource>
         </driver>
-
-        <driver name="LCIOWriter"
-                type="org.lcsim.util.loop.LCIODriver">
+        <driver name="LCIOWriter" type="org.lcsim.util.loop.LCIODriver">
             <outputFilePath>${outputFile}</outputFilePath>
         </driver>
-                                                                    
     </drivers>
 </lcsim>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/LcioToEvio.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/LcioToEvio.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/LcioToEvio.lcsim	Mon Nov  3 02:54:53 2014
@@ -4,16 +4,18 @@
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
-        <driver name="CalibrationDriver"/>
         <driver name="RawTrackerHitSensorSetup"/>
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="DummyTrigger"/>
         <driver name="TestRunReconToEvio"/>
         <driver name="ClockDriver"/>
     </execute> 
 
     <drivers>
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver"/>
         <driver name="RawTrackerHitSensorSetup" type="org.lcsim.recon.tracking.digitization.sisim.config.RawTrackerHitSensorSetup"/>
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="DummyTrigger" type="org.hps.readout.ecal.DummyTriggerDriver">
             <period>1</period>
             <deadTime>0</deadTime>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunNoPileup.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunNoPileup.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunNoPileup.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,4 +1,3 @@
-
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">       
     <control>
@@ -7,7 +6,8 @@
     </control>    
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="EcalRawConverter"/>
         <driver name="EcalRawConverterDriver"/>
         <driver name="EcalTriggerFilter"/>
@@ -18,8 +18,11 @@
         <driver name="CleanupDriver"/>
     </execute>    
     <drivers>
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
+        <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
+            <eventInterval>1000</eventInterval>
         </driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.TestRunConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="EcalRawConverter" type="org.hps.recon.ecal.EcalEdepToTriggerConverterDriver">
             <readoutCollection>EcalReadoutAnalogHits</readoutCollection>
         </driver>
@@ -37,18 +40,14 @@
             <ecalCollectionName>EcalFilteredHits</ecalCollectionName>
             <clusterCollectionName>EcalTriggerClusters</clusterCollectionName>
         </driver>
+        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
+            <noPileup>true</noPileup>
+        </driver>
         <driver name="EcalTrigger" type="org.hps.readout.ecal.TestRunTriggerDriver">
             <clusterCollectionName>EcalTriggerClusters</clusterCollectionName>
             <deadTime>0</deadTime>
             <lcioFile>${outputFile}.slcio</lcioFile>
         </driver>	
-        <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
-            <eventInterval>1000</eventInterval>
-        </driver>
-        
-        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
-            <noPileup>true</noPileup>
-        </driver>
         <driver name="ClockDriver" type="org.hps.readout.ecal.ClockDriver"/>
         <driver name="CleanupDriver" type="org.lcsim.recon.tracking.digitization.sisim.config.ReadoutCleanupDriver"/>
     </drivers>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToEvio.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToEvio.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToEvio.lcsim	Mon Nov  3 02:54:53 2014
@@ -5,7 +5,8 @@
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>   
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="BadChannelFilter" />
         <driver name="EcalReadout"/>
         <driver name="EcalConverter"/>
@@ -17,17 +18,12 @@
         <driver name="TestRunReconToEvio"/>
         <driver name="CleanupDriver"/>
     </execute> 
-
     <drivers>
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver> 
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-<!--            <runNumber>1351</runNumber>    -->
-        </driver>
-        <driver name="TestRunReconToEvio" type="org.hps.evio.TestRunTriggeredReconToEvio">
-            <evioOutputFile>${outputFile}.evio</evioOutputFile>
-        </driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.TestRunConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="BadChannelFilter" type="org.hps.recon.tracking.SVTBadChannelFilterDriver" /> 		
         <driver name="EcalReadout" type="org.hps.readout.ecal.FADCEcalReadoutDriver">
             <coincidenceWindow>8</coincidenceWindow>
@@ -43,36 +39,32 @@
             <pulseShape>CRRC</pulseShape>
             <tp>14.0</tp>
         </driver>
-
         <driver name="EcalConverter" type="org.hps.recon.ecal.EcalConverterDriver">
             <rawCollectionName>EcalRawHits</rawCollectionName>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
             <scale>1</scale>
         </driver>	
-        
         <driver name="EcalTriggerFilter" type="org.hps.recon.ecal.EcalTriggerFilterDriver">
             <inputCollection>EcalCorrectedHits</inputCollection>
             <outputCollection>EcalFilteredHits</outputCollection>
         </driver>
-
         <driver name="EcalClusterer" type="org.hps.recon.ecal.CTPEcalClusterer">
             <ecalName>Ecal</ecalName>
             <clusterWindow>32.0</clusterWindow>
             <ecalCollectionName>EcalFilteredHits</ecalCollectionName>
         </driver>
-
         <driver name="EcalTrigger" type="org.hps.readout.ecal.TestRunTriggerDriver">
             <clusterCollectionName>EcalClusters</clusterCollectionName>
             <deadTime>10</deadTime>
             <outputFileName>${outputFile}.triggers</outputFileName>
         </driver>	
-        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
+        <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout" />
+        <driver name="ClockDriver" type="org.hps.readout.ecal.ClockDriver"/>
+        <driver name="TestRunReconToEvio" type="org.hps.evio.TestRunTriggeredReconToEvio">
+            <evioOutputFile>${outputFile}.evio</evioOutputFile>
         </driver>
-
-        <driver name="ClockDriver" type="org.hps.readout.ecal.ClockDriver"/>
         <driver name="CleanupDriver" type="org.lcsim.recon.tracking.digitization.sisim.config.ReadoutCleanupDriver">
             <collectionNames>TrackerHits</collectionNames>
         </driver> 
     </drivers>
 </lcsim>
-	

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToLcio.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToLcio.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/readout/TestRunReadoutToLcio.lcsim	Mon Nov  3 02:54:53 2014
@@ -5,7 +5,8 @@
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>   
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="BadChannelFilter" />
         <driver name="EcalReadout"/>
         <driver name="EcalConverter"/>
@@ -22,12 +23,8 @@
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver> 
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <runNumber>${runNumber}</runNumber>
-        </driver>
-        <driver name="TestRunReconToLcio" type="org.hps.evio.TestRunTriggeredReconToLcio">
-            <outputFile>${outputFile}.slcio</outputFile>
-        </driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.TestRunConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="BadChannelFilter" type="org.hps.recon.tracking.SVTBadChannelFilterDriver" /> 	
         <driver name="EcalReadout" type="org.hps.readout.ecal.FADCEcalReadoutDriver">
             <coincidenceWindow>8</coincidenceWindow>
@@ -43,24 +40,20 @@
             <pulseShape>CRRC</pulseShape>
             <tp>14.0</tp>
         </driver>
-
         <driver name="EcalConverter" type="org.hps.recon.ecal.EcalConverterDriver">
             <rawCollectionName>EcalRawHits</rawCollectionName>
             <ecalCollectionName>EcalCorrectedHits</ecalCollectionName>
             <scale>1</scale>
         </driver>	
-        
         <driver name="EcalTriggerFilter" type="org.hps.recon.ecal.EcalTriggerFilterDriver">
             <inputCollection>EcalCorrectedHits</inputCollection>
             <outputCollection>EcalFilteredHits</outputCollection>
         </driver>
-
         <driver name="EcalClusterer" type="org.hps.recon.ecal.CTPEcalClusterer">
             <ecalName>Ecal</ecalName>
             <clusterWindow>32.0</clusterWindow>
             <ecalCollectionName>EcalFilteredHits</ecalCollectionName>
         </driver>
-
         <driver name="EcalTrigger" type="org.hps.readout.ecal.TestRunTriggerDriver">
             <clusterCollectionName>EcalClusters</clusterCollectionName>
             <deadTime>10</deadTime>
@@ -68,11 +61,12 @@
         </driver>	
         <driver name="SimpleSVTReadout" type="org.hps.readout.svt.SimpleSvtReadout">
         </driver>
-
         <driver name="ClockDriver" type="org.hps.readout.ecal.ClockDriver"/>
+        <driver name="TestRunReconToLcio" type="org.hps.evio.TestRunTriggeredReconToLcio">
+            <outputFile>${outputFile}.slcio</outputFile>
+        </driver>
         <driver name="CleanupDriver" type="org.lcsim.recon.tracking.digitization.sisim.config.ReadoutCleanupDriver">
             <collectionNames>TrackerHits</collectionNames>
         </driver> 
     </drivers>
 </lcsim>
-	

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/GBLReco.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/GBLReco.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/GBLReco.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,15 +1,16 @@
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
-    <inputFiles>
-    </inputFiles>
+    
     <control>
         <numberOfEvents>-1</numberOfEvents>
         <printInputFiles>true</printInputFiles>
         <printDriversDetailed>true</printDriversDetailed>
     </control>    
+    
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/> 
         <driver name="BadChannelFilter" />
         <driver name="RawTrackerHitFitterDriver" />
@@ -23,25 +24,21 @@
     </execute>    
 
     <drivers>
-		<driver name="GBLDriver"
-                type="org.hps.recon.tracking.gbl.GBLOutputDriver">
-                <debug>0</debug>
-                <isMC>${isMC}</isMC>
-                <gblFileName>gblinput.txt</gblFileName>
-	</driver>
 
+        <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
+            <eventInterval>100</eventInterval>
+        </driver>        
+
+	   	<driver name="GBLDriver" type="org.hps.recon.tracking.gbl.GBLOutputDriver">
+            <debug>0</debug>
+            <isMC>${isMC}</isMC>
+            <gblFileName>gblinput.txt</gblFileName>
+    	</driver>
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
 
 <!-- Reconstruction drivers below -->
 
-
-
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-                <runNumber>1351</runNumber>
-        </driver>
-        <driver name="EventMarkerDriver"
-                type="org.lcsim.job.EventMarkerDriver">
-            <eventInterval>100</eventInterval>
-        </driver>        
         <driver name="RawTrackerHitSensorSetup" type="org.lcsim.recon.tracking.digitization.sisim.config.RawTrackerHitSensorSetup"/>
         <driver name="BadChannelFilter" type="org.hps.recon.tracking.SVTBadChannelFilterDriver" /> 
         <driver name="RawTrackerHitFitterDriver" type="org.hps.recon.tracking.RawTrackerHitFitterDriver">

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineNoPileupRecon.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineNoPileupRecon.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineNoPileupRecon.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,15 +1,14 @@
 <!-- 
   Offline reconstruction for 2014 (electron run) data.
-    Updated on 16Oct to include new clustering with corrections. -HS <[log in to unmask]>
   
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: HPS2014OfflineRecon.lcsim,v 1.7 2013/10/30 16:23:32 phansson Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
-        <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="EventMarkerDriver"/>       
+        <driver name="ConditionsDriver"/>
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" />
         <driver name="TrackerHitDriver"/>
@@ -24,12 +23,11 @@
         <driver name="CleanupDriver"/>
     </execute>    
     <drivers>    
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <!--            <runNumber>${runNumber}</runNumber>-->
-        </driver>   
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>        
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup" type="org.lcsim.recon.tracking.digitization.sisim.config.RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" type="org.hps.recon.tracking.RawTrackerHitFitterDriver">
             <fitAlgorithm>Analytic</fitAlgorithm>
@@ -53,7 +51,6 @@
             <isMC>false</isMC>
             <gblFileName></gblFileName>
         </driver>
-
         <driver name="EcalRawConverter" type="org.hps.recon.ecal.EcalRawConverterDriver">
             <ecalCollectionName>EcalCalHits</ecalCollectionName>
             <use2014Gain>true</use2014Gain>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineRecon.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineRecon.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineRecon.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,14 +1,13 @@
 <!-- 
   Offline reconstruction for 2014 (electron run) data.
-  Updated on 16Oct to include new clustering with corrections. -HS <[log in to unmask]>
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: HPS2014OfflineRecon.lcsim,v 1.7 2013/10/30 16:23:32 phansson Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver" />
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" />
         <driver name="TrackerHitDriver"/>
@@ -23,9 +22,8 @@
         <driver name="CleanupDriver"/>
     </execute>    
     <drivers>    
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <!--            <runNumber>${runNumber}</runNumber>-->
-        </driver>   
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />   
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>        
@@ -56,7 +54,6 @@
             <isMC>false</isMC>
             <gblFileName></gblFileName>
         </driver>
-
         <driver name="EcalRawConverter" type="org.hps.recon.ecal.EcalRawConverterDriver">
             <ecalCollectionName>EcalCalHits</ecalCollectionName>
             <use2014Gain>true</use2014Gain>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineTruthRecon.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineTruthRecon.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPS2014OfflineTruthRecon.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,15 +1,14 @@
 <!-- 
   Offline reconstruction for 2014 (electron run) data.
-    Updated on 16Oct to include new clustering with corrections. -HS <[log in to unmask]>
   
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: HPS2014OfflineRecon.lcsim,v 1.7 2013/10/30 16:23:32 phansson Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver" />
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" />
         <driver name="TrackerHitDriver"/>
@@ -24,9 +23,8 @@
         <driver name="CleanupDriver"/>
     </execute>    
     <drivers>    
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <!--            <runNumber>${runNumber}</runNumber>-->
-        </driver>   
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>        

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPSTrackingDefaultsRecon.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPSTrackingDefaultsRecon.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/HPSTrackingDefaultsRecon.lcsim	Mon Nov  3 02:54:53 2014
@@ -9,7 +9,8 @@
     
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver" />
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="SVTBadChannelFilterDriver"/>
         <driver name="RawTrackerHitFitterDriver" />
@@ -21,44 +22,30 @@
     </execute>
     
     <drivers>
-        <driver name="SVTBadChannelFilterDriver" type="org.hps.recon.tracking.SVTBadChannelFilterDriver"/>
-
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <!--            <runNumber>1351</runNumber>    -->
-        </driver>
-
-        <driver name="RawTrackerHitSensorSetup" type="org.lcsim.recon.tracking.digitization.sisim.config.RawTrackerHitSensorSetup"/>
-
-        <driver name="EventMarkerDriver"
-                type="org.lcsim.job.EventMarkerDriver">
+        <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>
-        
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
+        <driver name="SVTBadChannelFilterDriver" type="org.hps.recon.tracking.SVTBadChannelFilterDriver"/>
+        <driver name="RawTrackerHitSensorSetup" type="org.lcsim.recon.tracking.digitization.sisim.config.RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" type="org.hps.recon.tracking.RawTrackerHitFitterDriver">
             <fitAlgorithm>Analytic</fitAlgorithm>
             <correctT0Shift>true</correctT0Shift>
         </driver>
-        
         <driver name="TrackerHitDriver" type="org.hps.recon.tracking.DataTrackerHitDriver" />        
-
-        <driver name="HelicalTrackHitDriver"
-                type="org.hps.recon.tracking.HelicalTrackHitDriver">
+        <driver name="HelicalTrackHitDriver" type="org.hps.recon.tracking.HelicalTrackHitDriver">
             <debug>false</debug>
             <maxSeperation>20.0</maxSeperation>
             <tolerance>1.0</tolerance>
         </driver>
-        
-        <driver name="TrackerReconDriver"
-                type="org.hps.recon.tracking.TrackerReconDriver">
+        <driver name="TrackerReconDriver" type="org.hps.recon.tracking.TrackerReconDriver">
             <debug>false</debug>
             <strategyResource>/org/hps/recon/tracking/strategies/HPS-Test-4pt1.xml</strategyResource>
         </driver>
-
-        <driver name="LCIOWriter"
-                type="org.lcsim.util.loop.LCIODriver">
+        <driver name="LCIOWriter" type="org.lcsim.util.loop.LCIODriver">
             <outputFilePath>${outputFile}</outputFilePath>
         </driver>
         <driver name="CleanupDriver" type="org.lcsim.recon.tracking.digitization.sisim.config.ReadoutCleanupDriver"/>
-         
     </drivers>
 </lcsim>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/SimpleMCRecon.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/SimpleMCRecon.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/SimpleMCRecon.lcsim	Mon Nov  3 02:54:53 2014
@@ -15,8 +15,10 @@
     <execute>
         <!-- Print out event numbers. -->
         <driver name="EventMarkerDriver"/>
-        <!-- Load the text based conditions. -->
-        <driver name="CalibrationDriver"/>
+        <!-- Load the database detector conditions. -->
+        <driver name="ConditionsDriver"/>        
+        <!-- Setup the SVT sensors. -->   
+        <driver name="SvtSensorSetup" />        
         <!-- Simple tracker hit digi. -->
         <driver name="TrackerDigiDriver"/>
         <!-- Create tracker hits. -->
@@ -36,7 +38,8 @@
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>10</eventInterval>
         </driver>
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver"/>
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="TrackerDigiDriver" type="org.hps.recon.tracking.SimpleTrackerDigiDriver">
             <debug>false</debug>
         </driver>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineRecon.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineRecon.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineRecon.lcsim	Mon Nov  3 02:54:53 2014
@@ -1,13 +1,13 @@
 <!-- 
   Offline reconstruction for test run (photon) data.
   @author Sho Uemura <[log in to unmask]>
-  @version $Id: TestRunOfflineRecon.lcsim,v 1.13 2013/10/30 16:23:32 phansson Exp $
 -->
 <lcsim xmlns:xs="http://www.w3.org/2001/XMLSchema-instance" 
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="BadChannelFilter" />
         <driver name="RawTrackerHitFitterDriver" />
@@ -22,9 +22,8 @@
         <driver name="CleanupDriver"/>
     </execute>    
     <drivers>    
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <runNumber>${runNumber}</runNumber>
-        </driver>   
+        <driver name="ConditionsDriver" type="org.hps.conditions.TestRunConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>        

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineReconTwoTrkFilter.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineReconTwoTrkFilter.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/recon/TestRunOfflineReconTwoTrkFilter.lcsim	Mon Nov  3 02:54:53 2014
@@ -2,7 +2,8 @@
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver" />
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" />
         <driver name="TrackerHitDriver"/>
@@ -15,9 +16,8 @@
 
     </execute>    
     <drivers>    
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <!--            <runNumber>${runNumber}</runNumber>-->
-        </driver>   
+        <driver name="ConditionsDriver" type="org.hps.conditions.TestRunConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="EventMarkerDriver"
                 type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>

Modified: java/trunk/steering-files/src/main/resources/org/hps/steering/users/holly/MockReconClusterICTest.lcsim
 =============================================================================
--- java/trunk/steering-files/src/main/resources/org/hps/steering/users/holly/MockReconClusterICTest.lcsim	(original)
+++ java/trunk/steering-files/src/main/resources/org/hps/steering/users/holly/MockReconClusterICTest.lcsim	Mon Nov  3 02:54:53 2014
@@ -7,7 +7,8 @@
        xs:noNamespaceSchemaLocation="http://www.lcsim.org/schemas/lcsim/1.0/lcsim.xsd">
     <execute>
         <driver name="EventMarkerDriver"/>
-        <driver name="CalibrationDriver"/>
+        <driver name="ConditionsDriver"/>   
+        <driver name="SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" />
         <driver name="TrackerHitDriver"/>
@@ -22,12 +23,11 @@
         <driver name="CleanupDriver"/>
     </execute>    
     <drivers>    
-        <driver name="CalibrationDriver" type="org.hps.conditions.deprecated.CalibrationDriver">
-            <!--            <runNumber>${runNumber}</runNumber>-->
-        </driver>   
         <driver name="EventMarkerDriver" type="org.lcsim.job.EventMarkerDriver">
             <eventInterval>1000</eventInterval>
         </driver>        
+        <driver name="ConditionsDriver" type="org.hps.conditions.ConditionsDriver" />
+        <driver name="SvtSensorSetup" type="org.hps.recon.tracking.SvtSensorSetup" />
         <driver name="RawTrackerHitSensorSetup" type="org.lcsim.recon.tracking.digitization.sisim.config.RawTrackerHitSensorSetup"/>
         <driver name="RawTrackerHitFitterDriver" type="org.hps.recon.tracking.RawTrackerHitFitterDriver">
             <fitAlgorithm>Pileup</fitAlgorithm>

Modified: java/trunk/tracking/src/main/java/org/hps/readout/svt/SimpleSvtReadout.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/readout/svt/SimpleSvtReadout.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/readout/svt/SimpleSvtReadout.java	Mon Nov  3 02:54:53 2014
@@ -1,6 +1,5 @@
 package org.hps.readout.svt;
 
-//--- java ---//
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
@@ -8,42 +7,48 @@
 import java.util.PriorityQueue;
 import java.util.Set;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTConstants;
-import org.hps.conditions.deprecated.SvtUtils;
-import org.hps.readout.ecal.ClockSingleton;
-import org.hps.readout.ecal.ReadoutTimestamp;
-import org.hps.readout.ecal.TriggerableDriver;
-import org.hps.util.RandomGaussian;
-//--- lcsim ---//
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.geometry.Detector;
+
+import org.lcsim.lcio.LCIOConstants;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.LCRelation;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.SimTrackerHit;
 import org.lcsim.event.base.BaseLCRelation;
 import org.lcsim.event.base.BaseRawTrackerHit;
-import org.lcsim.geometry.Detector;
-import org.lcsim.lcio.LCIOConstants;
+
 import org.lcsim.recon.tracking.digitization.sisim.CDFSiSensorSim;
 import org.lcsim.recon.tracking.digitization.sisim.SiElectrodeData;
 import org.lcsim.recon.tracking.digitization.sisim.SiElectrodeDataCollection;
 import org.lcsim.recon.tracking.digitization.sisim.SiSensorSim;
 import org.lcsim.recon.tracking.digitization.sisim.config.SimTrackerHitReadoutDriver;
 
+import org.hps.conditions.deprecated.HPSSVTConstants;
+import org.hps.readout.ecal.ClockSingleton;
+import org.hps.readout.ecal.ReadoutTimestamp;
+import org.hps.readout.ecal.TriggerableDriver;
+import org.hps.util.RandomGaussian;
+
 /**
- * 
+ * SVT readout simulation. 
+ *  
  * @author Sho Uemura <[log in to unmask]>
- * @version $Id: SimpleSvtReadout.java,v 1.19 2013/08/07 23:38:32 meeg Exp $
  */
 public class SimpleSvtReadout extends TriggerableDriver {
-
+	
+	//-----------------//
+	//--- Constants ---//
+	//-----------------//
+	private static final String SVT_SUBDETECTOR_NAME = "Tracker";
+	
     private SimTrackerHitReadoutDriver readoutDriver = new SimTrackerHitReadoutDriver();
     private SiSensorSim siSimulation = new CDFSiSensorSim();
-    private String outputCollection = "SVTRawTrackerHits";
-    private String relationCollection = "SVTTrueHitRelations";
     private Map<SiSensor, PriorityQueue<StripHit>[]> hitMap = new HashMap<SiSensor, PriorityQueue<StripHit>[]>();
+    private List<SiSensor> sensors = null;
+    
     // readout period time offset in ns
     private double readoutOffset = 0.0;
     private double readoutLatency = 280.0;
@@ -52,6 +57,7 @@
     private double timeOffset = 30.0;
     private boolean noPileup = false;
     private boolean addNoise = true;
+    
     // cut settings
     private boolean enableThresholdCut = true;
     private int samplesAboveThreshold = 3;
@@ -59,6 +65,11 @@
     private boolean enablePileupCut = true;
     private boolean dropBadChannels = true;
 
+    // Collection Names
+    private String outputCollection = "SVTRawTrackerHits";
+    private String relationCollection = "SVTTrueHitRelations";
+    
+    
     public SimpleSvtReadout() {
         add(readoutDriver);
         triggerDelay = 100.0;
@@ -103,12 +114,17 @@
     public void detectorChanged(Detector detector) {
         super.detectorChanged(detector);
 
+		// Get the collection of all SiSensors from the SVT 
+        sensors 
+        	= detector.getSubdetector(SVT_SUBDETECTOR_NAME).
+        			getDetectorElement().findDescendants(SiSensor.class);
+        
         String[] readouts = { readout };
         readoutDriver.setCollections(readouts);
 
         if (!noPileup) {
-            for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
-                PriorityQueue<StripHit>[] hitQueues = new PriorityQueue[HPSSVTConstants.TOTAL_STRIPS_PER_SENSOR];
+            for(SiSensor sensor : sensors){
+        		PriorityQueue<StripHit>[] hitQueues = new PriorityQueue[HPSSVTConstants.TOTAL_STRIPS_PER_SENSOR];
                 hitMap.put(sensor, hitQueues);
             }
         }
@@ -136,12 +152,12 @@
             }
 
             // dump stale hits
-            for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+            for (SiSensor sensor : sensors) {
                 PriorityQueue<StripHit>[] hitQueues = hitMap.get(sensor);
                 for (int i = 0; i < hitQueues.length; i++) {
                     if (hitQueues[i] != null) {
                         while (!hitQueues[i].isEmpty() && hitQueues[i].peek().time < ClockSingleton.getTime() - (readoutLatency + pileupCutoff)) {
-                            // System.out.format("Time %f: Dump stale hit with time %f\n",ClockSingleton.getTime(),hitQueues[i].peek().time);
+                            //System.out.format("Time %f: Dump stale hit with time %f\n",ClockSingleton.getTime(),hitQueues[i].peek().time);
                             hitQueues[i].poll();
                         }
                         if (hitQueues[i].isEmpty()) {
@@ -154,38 +170,34 @@
             // If an ECal trigger is received, make hits from pipelines
             checkTrigger(event);
         } else {
-            // Create a list to hold the analog data
+            
+        	// Create a list to hold the analog data
             List<RawTrackerHit> hits = new ArrayList<RawTrackerHit>();
 
             for (StripHit stripHit : stripHits) {
-                SiSensor sensor = stripHit.sensor;
+                HpsSiSensor sensor = (HpsSiSensor) stripHit.sensor;
                 int channel = stripHit.channel;
                 double amplitude = stripHit.amplitude;
                 short[] samples = new short[6];
 
                 double[] signal = new double[6];
-                for (int i = 0; i < 6; i++) {
-                    signal[i] = HPSSVTCalibrationConstants.getPedestal(sensor, channel);
+                for (int sampleN = 0; sampleN < 6; sampleN++) {
+                	signal[sampleN] = sensor.getPedestal(channel, sampleN);
                 }
                 if (addNoise) {
                     addNoise(sensor, channel, signal);
                 }
 
-                for (int i = 0; i < 6; i++) {
-                    double time = i * HPSSVTConstants.SAMPLING_INTERVAL - timeOffset;
-                    signal[i] += amplitude * pulseAmplitude(time, HPSSVTCalibrationConstants.getTShaping(sensor, channel));
-                    // signal[i] += amplitude * pulseAmplitude(time,
-                    // HPSSVTCalibrationConstants.getTShaping(sensor, channel)) +
-                    // HPSSVTCalibrationConstants.getPedestal(sensor, channel);
-                    samples[i] = (short) Math.round(signal[i]);
-                }
-
-                long cell_id = SvtUtils.makeCellID(sensor, channel);
-
-                RawTrackerHit hit = new BaseRawTrackerHit(0, cell_id, samples, new ArrayList<SimTrackerHit>(stripHit.simHits), sensor);
-                // System.out.println("Making RTH");
+                for (int sampleN = 0; sampleN < 6; sampleN++) {
+                    double time = sampleN * HPSSVTConstants.SAMPLING_INTERVAL - timeOffset;
+                    double tp = sensor.getShapeFitParameters(channel)[HpsSiSensor.TP_INDEX];
+                    signal[sampleN] = amplitude * pulseAmplitude(time, tp);
+                    samples[sampleN] = (short) Math.round(signal[sampleN]);
+                }
+
+                long channel_id = sensor.makeChannelID(channel);
+                RawTrackerHit hit = new BaseRawTrackerHit(0, channel_id, samples, new ArrayList<SimTrackerHit>(stripHit.simHits), sensor);
                 if (readoutCuts(hit)) {
-                    // System.out.println("RTH passed cuts");
                     hits.add(hit);
                 }
             }
@@ -193,13 +205,19 @@
             int flags = 1 << LCIOConstants.TRAWBIT_ID1;
             // flags += 1 << LCIOConstants.RTHBIT_HITS;
             event.put(outputCollection, hits, RawTrackerHit.class, flags, readout);
-            // System.out.println("Made " + hits.size() + " RawTrackerHits");
-        }
-    }
-
+            System.out.println("Made " + hits.size() + " RawTrackerHits");
+        }
+    }
+
+    /**
+     * 
+     * @return Collection of StripHits
+     */
     private List<StripHit> doSiSimulation() {
+    	
         List<StripHit> stripHits = new ArrayList<StripHit>();
-        for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+        
+        for (SiSensor sensor : sensors) {
 
             // Set the sensor to be used in the charge deposition simulation
             siSimulation.setSensor(sensor);
@@ -242,6 +260,7 @@
 
                         double resistorValue = 100; // Ohms
                         double inputStageGain = 1.5;
+                        // FIXME: This should use the gains instead
                         double amplitude = (charge / HPSSVTConstants.MIP) * resistorValue * inputStageGain * Math.pow(2, 14) / 2000;
 
                         stripHits.add(new StripHit(sensor, channel, amplitude, time, simHits));
@@ -255,32 +274,31 @@
     }
 
     private void addNoise(SiSensor sensor, int channel, double[] signal) {
-        double noise = HPSSVTCalibrationConstants.getNoise(sensor, channel);
-        for (int i = 0; i < 6; i++) {
-            signal[i] += RandomGaussian.getGaussian(0, noise);
+        for (int sampleN = 0; sampleN < 6; sampleN++) {
+            signal[sampleN] += RandomGaussian.getGaussian(0, ((HpsSiSensor) sensor).getNoise(channel, sampleN));
         }
     }
 
     private boolean readoutCuts(RawTrackerHit hit) {
         if (enableThresholdCut && !samplesAboveThreshold(hit)) {
-            // System.out.println("Failed threshold cut");
+            //System.out.println("Failed threshold cut");
             return false;
         }
         if (enablePileupCut && !pileupCut(hit)) {
-            // System.out.println("Failed pileup cut");
+            //System.out.println("Failed pileup cut");
             return false;
         }
         if (dropBadChannels && !badChannelCut(hit)) {
-            // System.out.println("Failed bad channel cut");
+            //System.out.println("Failed bad channel cut");
             return false;
         }
         return true;
     }
 
     private boolean badChannelCut(RawTrackerHit hit) {
-        SiSensor sensor = (SiSensor) hit.getDetectorElement();
+        HpsSiSensor sensor = (HpsSiSensor) hit.getDetectorElement();
         int channel = hit.getIdentifierFieldValue("strip");
-        return !HPSSVTCalibrationConstants.isBadChannel(sensor, channel);
+        return !sensor.isBadChannel(channel);
     }
 
     private boolean pileupCut(RawTrackerHit hit) {
@@ -289,16 +307,17 @@
     }
 
     private boolean samplesAboveThreshold(RawTrackerHit hit) {
-        SiSensor sensor = (SiSensor) hit.getDetectorElement();
+        HpsSiSensor sensor = (HpsSiSensor) hit.getDetectorElement();
         int channel = hit.getIdentifierFieldValue("strip");
-        HPSSVTCalibrationConstants.getChannelConstants(sensor, channel);
-        double pedestal = HPSSVTCalibrationConstants.getPedestal(sensor, channel);
-        double noise = HPSSVTCalibrationConstants.getNoise(sensor, channel);
+        double pedestal = 0; 
+        double noise = 0; 
         int count = 0;
         short[] samples = hit.getADCValues();
-        for (int i = 0; i < samples.length; i++) {
-            // System.out.format("%d, %d\n", samples[i] - pedestal, noise * 3.0);
-            if (samples[i] - pedestal > noise * noiseThreshold) {
+        for (int sampleN = 0; sampleN < samples.length; sampleN++) {
+        	pedestal = sensor.getPedestal(channel, sampleN);
+        	noise = sensor.getNoise(channel, sampleN);
+             //System.out.format("%d, %d\n", samples[sampleN] - pedestal, noise * 3.0);
+            if (samples[sampleN] - pedestal > noise * noiseThreshold) {
                 count++;
             }
         }
@@ -310,7 +329,7 @@
         if (noPileup) {
             return;
         }
-        // System.out.println("Got trigger");
+        //System.out.println("Got trigger");
 
         // Create a list to hold the analog data
         List<RawTrackerHit> hits = new ArrayList<RawTrackerHit>();
@@ -318,15 +337,15 @@
         // Calculate time of first sample
         double firstSample = Math.floor((ClockSingleton.getTime() - readoutLatency - readoutOffset) / HPSSVTConstants.SAMPLING_INTERVAL) * HPSSVTConstants.SAMPLING_INTERVAL + readoutOffset;
 
-        for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+        for (SiSensor sensor : sensors) {
             PriorityQueue<StripHit>[] hitQueues = hitMap.get(sensor);
             for (int channel = 0; channel < hitQueues.length; channel++) {
                 if (!addNoise && (hitQueues[channel] == null || hitQueues[channel].isEmpty())) {
                     continue;
                 }
                 double[] signal = new double[6];
-                for (int i = 0; i < 6; i++) {
-                    signal[i] = HPSSVTCalibrationConstants.getPedestal(sensor, channel);
+                for (int sampleN = 0; sampleN < 6; sampleN++) {
+                    signal[sampleN] = ((HpsSiSensor) sensor).getPedestal(channel, sampleN);
                 }
                 if (addNoise) {
                     addNoise(sensor, channel, signal);
@@ -337,34 +356,34 @@
                 if (hitQueues[channel] != null) {
                     for (StripHit hit : hitQueues[channel]) {
                         double totalContrib = 0;
-                        for (int i = 0; i < 6; i++) {
-                            double sampleTime = firstSample + i * HPSSVTConstants.SAMPLING_INTERVAL;
-                            double signalAtTime = hit.amplitude * pulseAmplitude(sampleTime - hit.time, HPSSVTCalibrationConstants.getTShaping(sensor, channel));
+                        double meanNoise = 0; 
+                        for (int sampleN = 0; sampleN < 6; sampleN++) {
+                            double sampleTime = firstSample + sampleN * HPSSVTConstants.SAMPLING_INTERVAL;
+                            double tp = ((HpsSiSensor) sensor).getShapeFitParameters(channel)[HpsSiSensor.TP_INDEX];
+                            double signalAtTime = hit.amplitude * pulseAmplitude(sampleTime - hit.time, tp);
                             totalContrib += signalAtTime;
-                            signal[i] += signalAtTime;
-                            // System.out.format("new value of signal[%d] = %f\n", i, signal[i]);
+                            signal[sampleN] += signalAtTime;
+                            meanNoise += ((HpsSiSensor) sensor).getNoise(channel, sampleN);
+                            //System.out.format("new value of signal[%d] = %f\n", sampleN, signal[sampleN]);
                         }
-                        if (totalContrib > 4.0 * HPSSVTCalibrationConstants.getNoise(sensor, channel)) {
-                            // System.out.format("adding %d simHits\n", hit.simHits.size());
+                        meanNoise /= 6;
+                        // Compare to the mean noise of the six samples instead
+                        if(totalContrib > 4.0*meanNoise){ 
+                        	 //System.out.format("adding %d simHits\n", hit.simHits.size());
                             simHits.addAll(hit.simHits);
                         }
                     }
                 }
 
                 short[] samples = new short[6];
-                for (int i = 0; i < 6; i++) {
-                    samples[i] = (short) Math.round(signal[i]);
-                }
-                // if (hitQueues[channel] != null && !hitQueues[channel].isEmpty()) {
-                // for (int i = 0; i < 6; i++) {
-                // System.out.format("samples[%d] = %d\n", i, samples[i]);
-                // }
-                // }
-                long cell_id = SvtUtils.makeCellID(sensor, channel);
-                RawTrackerHit hit = new BaseRawTrackerHit(0, cell_id, samples, simHits, sensor);
+                for (int sampleN = 0; sampleN < 6; sampleN++) {
+                    samples[sampleN] = (short) Math.round(signal[sampleN]);
+                }
+                long channel_id = ((HpsSiSensor) sensor).makeChannelID(channel); 
+                RawTrackerHit hit = new BaseRawTrackerHit(0, channel_id, samples, simHits, sensor);
                 if (readoutCuts(hit)) {
                     hits.add(hit);
-                    // System.out.format("simHits: %d\n", simHits.size());
+                    //System.out.format("simHits: %d\n", simHits.size());
                     for (SimTrackerHit simHit : hit.getSimTrackerHits()) {
                         LCRelation hitRelation = new BaseLCRelation(hit, simHit);
                         trueHitRelations.add(hitRelation);
@@ -374,7 +393,6 @@
         }
 
         int flags = 1 << LCIOConstants.TRAWBIT_ID1;
-        // flags += 1 << LCIOConstants.RTHBIT_HITS;
         event.put(outputCollection, hits, RawTrackerHit.class, flags, readout);
         event.put(relationCollection, trueHitRelations, LCRelation.class, 0);
         System.out.println("Made " + hits.size() + " RawTrackerHits");
@@ -384,8 +402,6 @@
     @Override
     public double readoutDeltaT() {
         double triggerTime = ClockSingleton.getTime() + triggerDelay;
-        // int cycle = (int) Math.floor((triggerTime - readoutOffset + ClockSingleton.getDt()) /
-        // Apv25Constants.SAMPLING_INTERVAL);
         // Calculate time of first sample
         double firstSample = Math.floor((triggerTime - readoutLatency - readoutOffset) / HPSSVTConstants.SAMPLING_INTERVAL) * HPSSVTConstants.SAMPLING_INTERVAL + readoutOffset;
 

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/DataTrackerHitDriver.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/DataTrackerHitDriver.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/DataTrackerHitDriver.java	Mon Nov  3 02:54:53 2014
@@ -5,7 +5,6 @@
 import java.util.List;
 import java.util.Set;
 
-import org.hps.conditions.deprecated.SvtUtils;
 import org.lcsim.detector.IDetectorElement;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
@@ -230,13 +229,6 @@
         // toString());
         event.put(this.stripHitOutputCollectionName, stripHits1D, SiTrackerHitStrip1D.class, 0, toString());
         if (debug) {
-            for (int mod = 0; mod < 2; mod++) {
-                for (int layer = 0; layer < 10; layer++) {
-                    counts[mod][layer] += SvtUtils.getInstance().getSensor(mod, layer).getReadout().getHits(SiTrackerHit.class).size();
-                }
-            }
-        }
-        if (debug) {
             System.out.println("[ DataTrackerHitDriver ] - " + this.stripHitOutputCollectionName + " has " + stripHits1D.size() + " hits.");
         }
     }

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/DumbShaperFit.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/DumbShaperFit.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/DumbShaperFit.java	Mon Nov  3 02:54:53 2014
@@ -2,15 +2,17 @@
 
 import java.util.ArrayList;
 import java.util.Collection;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+
+
+//===>import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.RawTrackerHit;
 
 /**
  *
  * @author Matt Graham
  */
-// FIXME: Is there some other description besides "dumb" that could be used in this class name?
-// --JM
+// FIXME: Change the name of the class to SimpleShaperFit - OM
 // TODO: Add class documentation.
 public class DumbShaperFit implements ShaperFitAlgorithm {
 
@@ -24,19 +26,22 @@
     }
 
     @Override
-    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, ChannelConstants constants) {
-        short[] adcVals = rth.getADCValues();
-        return this.fitShape(adcVals, constants);
+    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth) {
+        short[] samples = rth.getADCValues();
+        HpsSiSensor sensor =(HpsSiSensor) rth.getDetectorElement();
+        int channel = rth.getIdentifierFieldValue("strip");
+        return fitShape(channel, samples, sensor);
     }
-
-    public Collection<ShapeFitParameters> fitShape(short[] adcVals, ChannelConstants constants) {
+    
+    public Collection<ShapeFitParameters> fitShape(int channel, short[] samples, HpsSiSensor sensor){
+    	
         ShapeFitParameters fitresults = new ShapeFitParameters();
         double[] pedSub = {-99.0, -99.0, -99.0, -99.0, -99.0, -99.0};
         double maxADC = -99999;
         int iMax = -1;
         double t0 = -999;
         for (int i = 0; i < 6; i++) {
-            pedSub[i] = adcVals[i] - constants.getPedestal();
+            pedSub[i] = samples[i] - sensor.getPedestal(channel, i);
             if (pedSub[i] > maxADC) {
                 maxADC = pedSub[i];
                 iMax = i;

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/HelicalTrackHitDriver.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/HelicalTrackHitDriver.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/HelicalTrackHitDriver.java	Mon Nov  3 02:54:53 2014
@@ -8,11 +8,13 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.StereoPair;
-import org.hps.conditions.deprecated.StereoPair.detectorVolume;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.StereoPair;
+//===> import org.hps.conditions.deprecated.StereoPair.detectorVolume;
+//===> import org.hps.conditions.deprecated.SvtUtils;
+
 import org.lcsim.detector.IDetectorElement;
 import org.lcsim.detector.ITransform3D;
+import org.lcsim.detector.converter.compact.subdetector.SvtStereoLayer;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.detector.tracker.silicon.SiTrackerModule;
 import org.lcsim.event.EventHeader;
@@ -28,19 +30,22 @@
 import org.lcsim.fit.helicaltrack.HelicalTrackStrip;
 import org.lcsim.geometry.Detector;
 import org.lcsim.geometry.subdetector.BarrelEndcapFlag;
+import org.lcsim.detector.converter.compact.subdetector.HpsTracker2;
 import org.lcsim.recon.tracking.digitization.sisim.SiTrackerHit;
 import org.lcsim.recon.tracking.digitization.sisim.SiTrackerHitStrip1D;
 import org.lcsim.recon.tracking.digitization.sisim.TrackerHitType;
 
 /**
+ * Driver used to create stereo hits from clusters.
+ *
  *
  * @author Mathew Graham <[log in to unmask]>
  * @author Per Hansson <[log in to unmask]>
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: HelicalTrackHitDriver.java,v 1.10 2013/10/17 22:08:33 omoreno
- * Exp $
+ * 
  */
 // TODO: Add class documentation.
+// FIXME: The option to run using the Common geometry should be removed
 public class HelicalTrackHitDriver extends org.lcsim.fit.helicaltrack.HelicalTrackHitDriver {
 
     private boolean _debug = false;
@@ -48,6 +53,7 @@
     // dt cut time in ns
     private String _subdetectorName = "Tracker";
     private final Map<String, String> _stereomap = new HashMap<String, String>();
+    private	List<SvtStereoLayer> stereoLayers = null; 
     private final List<String> _colnames = new ArrayList<String>();
     private boolean _doTransformToTracking = true;
 
@@ -279,21 +285,20 @@
                     hitsOnSensor.add(strip);
                 }
 
-                for (StereoPair stereoPair : SvtUtils.getInstance().getStereoPairs()) {
+                //===> for (StereoPair stereoPair : SvtUtils.getInstance().getStereoPairs()) {
+                for (SvtStereoLayer stereoLayer : stereoLayers) {
 
                     // Form the stereo hits and add them to our hit list
                     List<HelicalTrackCross> newCrosses;
 
-                    if (stereoPair.getDetectorVolume() == detectorVolume.Top) {
-                        newCrosses = _crosser.MakeHits(striplistmap.get(stereoPair.getAxialSensor()), striplistmap.get(stereoPair.getStereoSensor()));
-                    } else if (stereoPair.getDetectorVolume() == detectorVolume.Bottom) {
-                        newCrosses = _crosser.MakeHits(striplistmap.get(stereoPair.getStereoSensor()), striplistmap.get(stereoPair.getAxialSensor()));
+                    //===> if (stereoPair.getDetectorVolume() == detectorVolume.Top) {
+                    if (stereoLayer.getAxialSensor().isTopLayer()) {
+                        newCrosses = _crosser.MakeHits(striplistmap.get(stereoLayer.getAxialSensor()), striplistmap.get(stereoLayer.getStereoSensor()));
+                    //===> } else if (stereoPair.getDetectorVolume() == detectorVolume.Bottom) {
+                    } else if (stereoLayer.getAxialSensor().isBottomLayer()) {
+                        newCrosses = _crosser.MakeHits(striplistmap.get(stereoLayer.getStereoSensor()), striplistmap.get(stereoLayer.getAxialSensor()));
                     } else {
                         throw new RuntimeException("stereo pair is neither top nor bottom");
-                    }
-
-                    if (_debug) {
-                        System.out.printf("%s: Found %d stereo hits from sensors\n%s: %s : %d hits\n%s: %s with %d hits\n", this.getClass().getSimpleName(), newCrosses.size(), this.getClass().getSimpleName(), stereoPair.getAxialSensor().getName(), striplistmap.get(stereoPair.getAxialSensor()) == null ? 0 : striplistmap.get(stereoPair.getAxialSensor()).size(), this.getClass().getSimpleName(), stereoPair.getStereoSensor().getName(), striplistmap.get(stereoPair.getStereoSensor()) == null ? 0 : striplistmap.get(stereoPair.getStereoSensor()).size());
                     }
 
                     helicalTrackCrosses.addAll(newCrosses);
@@ -360,6 +365,9 @@
     @Override
     protected void detectorChanged(Detector detector) {
 
+    	// Get the collection of stereo layers from the detector
+    	stereoLayers = ((HpsTracker2) detector.getSubdetector(this._subdetectorName).getDetectorElement()).getStereoPairs();
+    	
         /*
          * Setup default pairing
          */

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/MaterialSupervisor.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/MaterialSupervisor.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/MaterialSupervisor.java	Mon Nov  3 02:54:53 2014
@@ -6,7 +6,6 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.SvtUtils;
 import org.lcsim.detector.IDetectorElement;
 import org.lcsim.detector.IGeometryInfo;
 import org.lcsim.detector.ILogicalVolume;
@@ -78,9 +77,6 @@
 
             SiStripPlane plane = new SiStripPlane(module);
 
-            if (DEBUG) {
-                System.out.printf("%s: %5d %32s %15.2fx%.2f %10.2f %10.3f %10s\n", this.getClass().getSimpleName(), plane.getId(), plane.origin().toString(), plane.getUnmeasuredDimension(), plane.getMeasuredDimension(), plane.getThickness(), plane.getThicknessInRL() * 100, SvtUtils.getInstance().isAxial(module) ? "axial" : "stereo");
-            }
             _detectorVolumes.add(plane);
         }
         if (DEBUG) {

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/NearestNeighborRMSClusterer.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/NearestNeighborRMSClusterer.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/NearestNeighborRMSClusterer.java	Mon Nov  3 02:54:53 2014
@@ -8,13 +8,17 @@
 import java.util.List;
 import java.util.Map;
 import java.util.Set;
+
 import org.apache.commons.math3.special.Gamma;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTConstants;
+
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
 import org.lcsim.detector.identifier.IIdentifier;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
+//===> import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.detector.tracker.silicon.SiTrackerIdentifierHelper;
 import org.lcsim.event.RawTrackerHit;
+
+import org.hps.conditions.deprecated.HPSSVTConstants;
 
 /**
  *
@@ -156,8 +160,15 @@
 
             // Get the signal from the readout chip
             double signal = base_hit.getAmp();
-            double noiseRMS = HPSSVTCalibrationConstants.getNoise((SiSensor) rth.getDetectorElement(), channel_number);
-
+            double noiseRMS = 0; 
+            for(int sampleN = 0; sampleN < HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES; sampleN++){
+            	noiseRMS += ((HpsSiSensor) rth.getDetectorElement()).getNoise(channel_number, sampleN);
+            }
+            noiseRMS = noiseRMS/HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES;
+            
+            //===> double noiseRMS = HPSSVTCalibrationConstants.getNoise((SiSensor) rth.getDetectorElement(), channel_number);
+            
+            
             // Mark this hit as available for clustering if it is above the neighbor threshold
             if (signal / noiseRMS >= _neighbor_threshold && passChisqCut(base_hit)) {
                 clusterableSet.add(channel_number);
@@ -205,7 +216,13 @@
                 cluster.add(channel_to_hit.get(clustered_cell));
                 FittedRawTrackerHit hit = channel_to_hit.get(clustered_cell);
                 cluster_signal += hit.getAmp();
-                cluster_noise_squared += Math.pow(HPSSVTCalibrationConstants.getNoise((SiSensor) hit.getRawTrackerHit().getDetectorElement(), clustered_cell), 2);
+                double strip_noise = 0; 
+                for(int sampleN = 0; sampleN < HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES; sampleN++){
+                	strip_noise += ((HpsSiSensor) hit.getRawTrackerHit().getDetectorElement()).getNoise(clustered_cell, sampleN);
+                }
+                strip_noise = strip_noise/HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES;
+                cluster_noise_squared += Math.pow(strip_noise, 2); 
+                //===> cluster_noise_squared += Math.pow(HPSSVTCalibrationConstants.getNoise((SiSensor) hit.getRawTrackerHit().getDetectorElement(), clustered_cell), 2);
                 cluster_weighted_time += hit.getT0() * hit.getAmp();
                 // cluster_noise_squared +=0; //need to get the noise from the calib. const. class
                 // Get the neigbor channels

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/NoiselessReadoutChip.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/NoiselessReadoutChip.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/NoiselessReadoutChip.java	Mon Nov  3 02:54:53 2014
@@ -1,6 +1,3 @@
-/*
- * Class BasicReadoutChip
- */
 package org.hps.recon.tracking;
 
 import java.util.ArrayList;
@@ -8,8 +5,9 @@
 import java.util.SortedMap;
 import java.util.TreeMap;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+//===> import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensorElectrodes;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.recon.tracking.digitization.sisim.ReadoutChip;
@@ -166,7 +164,9 @@
 
         // Loop over the channels contained in the SiElectrodeDataCollection
         for (Integer channel : data.keySet()) {
-            if (dropBadChannels && HPSSVTCalibrationConstants.isBadChannel((SiSensor) electrodes.getDetectorElement(), channel)) {
+        	
+        	if(dropBadChannels && ((HpsSiSensor) electrodes.getDetectorElement()).isBadChannel(channel)){
+            //===> if (dropBadChannels && HPSSVTCalibrationConstants.isBadChannel((SiSensor) electrodes.getDetectorElement(), channel)) {
                 // System.out.format("%d bad\n", channel);
                 continue;
             }

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/RawTrackerHitFitterDriver.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/RawTrackerHitFitterDriver.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/RawTrackerHitFitterDriver.java	Mon Nov  3 02:54:53 2014
@@ -5,11 +5,11 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
 import org.hps.conditions.deprecated.HPSSVTConstants;
 import org.hps.readout.ecal.ReadoutTimestamp;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
+//===> import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.geometry.Detector;
@@ -112,10 +112,13 @@
         // Make a fitted hit from this cluster
         for (RawTrackerHit hit : rawHits) {
             int strip = hit.getIdentifierFieldValue("strip");
-            ChannelConstants constants = HPSSVTCalibrationConstants.getChannelConstants((SiSensor) hit.getDetectorElement(), strip);
-            for (ShapeFitParameters fit : _shaper.fitShape(hit, constants)) {
+            HpsSiSensor sensor = (HpsSiSensor) hit.getDetectorElement();
+            //===> ChannelConstants constants = HPSSVTCalibrationConstants.getChannelConstants((SiSensor) hit.getDetectorElement(), strip);
+            //for (ShapeFitParameters fit : _shaper.fitShape(hit, constants)) {
+            for (ShapeFitParameters fit : _shaper.fitShape(hit)) {
                 if (correctT0Shift) {
-                    fit.setT0(fit.getT0() - constants.getT0Shift());
+                    //===> fit.setT0(fit.getT0() - constants.getT0Shift());
+                    fit.setT0(fit.getT0() - sensor.getT0Shift());
                 }
                 if (subtractTOF) {
                     double tof = hit.getDetectorElement().getGeometry().getPosition().magnitude() / (Const.SPEED_OF_LIGHT * Const.nanosecond);

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/SVTBadChannelFilterDriver.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/SVTBadChannelFilterDriver.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/SVTBadChannelFilterDriver.java	Mon Nov  3 02:54:53 2014
@@ -3,39 +3,49 @@
 import java.util.Iterator;
 import java.util.List;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.EventHeader.LCMetaData;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.util.Driver;
 
 /**
+ * Driver used to filter out RawTrackerHits that have been identified to come
+ * from noisy/dead channels.  
  * 
  * @author Sho Uemura <[log in to unmask]>
+ * @version $Id$
+ * 
  */
-// TODO: Add class documentation.
 public class SVTBadChannelFilterDriver extends Driver {
 
+	// RawTrackerHit collection name 
     private String rawTrackerHitCollection = "SVTRawTrackerHits";
 
     @Override
     public void process(EventHeader event) {
+    	
         if (event.hasCollection(RawTrackerHit.class, rawTrackerHitCollection)) {
-            List<RawTrackerHit> hits = event.get(RawTrackerHit.class, rawTrackerHitCollection);
-            LCMetaData meta = event.getMetaData(hits);
-            Iterator<RawTrackerHit> i = hits.iterator();
-            while (i.hasNext()) {
-                RawTrackerHit hit = i.next();
+            
+        	// Get the list of raw hits from the event
+        	List<RawTrackerHit> hits = event.get(RawTrackerHit.class, rawTrackerHitCollection);
+        	
+            // Get the hits meta data from the event
+        	LCMetaData meta = event.getMetaData(hits);
+            
+        	// Iterate over all raw hits in the event.  If the raw hit is 
+        	// identified to come from a noisy/bad channel, remove it from
+        	// the list of raw hits.
+            Iterator<RawTrackerHit> hitsIterator = hits.iterator();
+            while (hitsIterator.hasNext()) {
+                
+            	RawTrackerHit hit = hitsIterator.next();
                 hit.setMetaData(meta);
                 int strip = hit.getIdentifierFieldValue("strip");
-                SiSensor sensor = (SiSensor) hit.getDetectorElement();
+                HpsSiSensor sensor = (HpsSiSensor) hit.getDetectorElement();
 
-                // System.out.format("module %d, layer %d, strip %d\n",
-                // hit.getIdentifierFieldValue("module"), hit.getIdentifierFieldValue("layer"),
-                // hit.getIdentifierFieldValue("strip"));
-                if (HPSSVTCalibrationConstants.isBadChannel(sensor, strip)) {
-                    i.remove();
+                if(sensor.isBadChannel(strip)){
+                	hitsIterator.remove();
                 }
 
                 if (!sensor.getReadout().getHits(RawTrackerHit.class).isEmpty()) {

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperAnalyticFitAlgorithm.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperAnalyticFitAlgorithm.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperAnalyticFitAlgorithm.java	Mon Nov  3 02:54:53 2014
@@ -2,9 +2,11 @@
 
 import java.util.ArrayList;
 import java.util.Collection;
+
 import org.apache.commons.math3.special.Gamma;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
 import org.hps.conditions.deprecated.HPSSVTConstants;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.RawTrackerHit;
 
 /**
@@ -22,23 +24,27 @@
     }
 
     @Override
-    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, ChannelConstants constants) {
-        return this.fitShape(rth.getADCValues(), constants);
+    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth) {
+        short[] samples = rth.getADCValues();
+        HpsSiSensor sensor =(HpsSiSensor) rth.getDetectorElement();
+        int channel = rth.getIdentifierFieldValue("strip");
+        return this.fitShape(channel, samples, sensor);
+    	//===> return this.fitShape(rth.getADCValues(), constants);
     }
 
-    public Collection<ShapeFitParameters> fitShape(short[] samples, ChannelConstants constants) {
+    public Collection<ShapeFitParameters> fitShape(int channel, short[] samples, HpsSiSensor sensor) {
         double minChisq = Double.POSITIVE_INFINITY;
         int bestStart = 0;
         ShapeFitParameters fit = new ShapeFitParameters();
         for (int i = 0; i < samples.length - 2; i++) {
-            double chisq = fitSection(samples, constants, fit, i);
+            double chisq = fitSection(channel, samples, sensor, fit, i);
             // System.out.println("i = " + i + ", " + fit);
             if (chisq < minChisq) {
                 minChisq = chisq;
                 bestStart = i;
             }
         }
-        fitSection(samples, constants, fit, bestStart);
+        fitSection(channel, samples, sensor, fit, bestStart);
         // System.out.format("%f\t%f\t%f\t%f\t%f\t%f\n", samples[0] - constants.getPedestal(),
         // samples[1] - constants.getPedestal(), samples[2] - constants.getPedestal(), samples[3] -
         // constants.getPedestal(), samples[4] - constants.getPedestal(), samples[5] -
@@ -49,21 +55,27 @@
         return fits;
     }
 
-    private double fitSection(short[] samples, ChannelConstants constants, ShapeFitParameters fit, int start) {
+    private double fitSection(int channel, short[] samples, HpsSiSensor sensor, ShapeFitParameters fit, int start) {
         int length = samples.length - start;
         double[] y = new double[length];
         double[] t = new double[length];
 
+        double tp = sensor.getShapeFitParameters(channel)[HpsSiSensor.TP_INDEX];
+
         for (int i = 0; i < length; i++) {
-            y[i] = samples[start + i] - constants.getPedestal();
+            //===> y[i] = samples[start + i] - constants.getPedestal();
+        	y[i] = samples[start + i] - sensor.getPedestal(channel, i);
             t[i] = HPSSVTConstants.SAMPLING_INTERVAL * i;
         }
 
         double[] p = new double[length];
         double[] a = new double[length];
         for (int i = 0; i < length; i++) {
-            p[i] = y[i] / constants.getNoise();
-            a[i] = Math.exp(1 - t[i] / constants.getTp()) / (constants.getTp() * constants.getNoise());
+            //===> p[i] = y[i] / constants.getNoise();
+            p[i] = y[i] / sensor.getNoise(channel, i);
+            //===> a[i] = Math.exp(1 - t[i] / constants.getTp()) / (constants.getTp() * constants.getNoise());
+            
+            a[i] = Math.exp(1 - t[i] /tp  / (tp * sensor.getNoise(channel, i)));
         }
 
         double pa, aatt, pat, aat, aa;
@@ -81,13 +93,15 @@
         }
 
         double t0 = (pa * aatt - pat * aat) / (pa * aat - aa * pat);
-        double A = pa / ((Math.exp(t0 / constants.getTp()) * (aat - t0 * aa)));
+        //===> double A = pa / ((Math.exp(t0 / constants.getTp()) * (aat - t0 * aa)));
+        double A = pa / ((Math.exp(t0 / tp) * (aat - t0 * aa)));
 
         double time_var = 0;
         double height_var = 0;
         for (int i = 0; i < length; i++) {
             double dt_dp = a[i] * (aatt - t[i] * aat - t0 * (aat - t[i] * aa)) / (pa * aat - aa * pat);
-            double dh_dp = (a[i] * Math.exp(-1.0 * t0 / constants.getTp()) + A * dt_dp * aa) / (aat - t0 * aa) - A * dt_dp / constants.getTp();
+            //===> double dh_dp = (a[i] * Math.exp(-1.0 * t0 / constants.getTp()) + A * dt_dp * aa) / (aat - t0 * aa) - A * dt_dp / constants.getTp();
+            double dh_dp = (a[i] * Math.exp(-1.0 * t0 / tp) + A * dt_dp * aa) / (aat - t0 * aa) - A * dt_dp / tp;
             time_var += dt_dp * dt_dp;
             height_var += dh_dp * dh_dp;
         }
@@ -100,8 +114,10 @@
         double chisq = 0;
         for (int i = 0; i < samples.length; i++) {
             double ti = HPSSVTConstants.SAMPLING_INTERVAL * i;
-            double fit_y = A * (Math.max(0, (ti - t0)) / constants.getTp()) * Math.exp(1 - (ti - t0) / constants.getTp()) + constants.getPedestal();
-            chisq += Math.pow((fit_y - samples[i]) / constants.getNoise(), 2);
+            //===> double fit_y = A * (Math.max(0, (ti - t0)) / constants.getTp()) * Math.exp(1 - (ti - t0) / constants.getTp()) + constants.getPedestal();
+            double fit_y = A * (Math.max(0, (ti - t0)) / tp) * Math.exp(1 - (ti - t0) / tp) + sensor.getPedestal(channel, i);
+            //===> chisq += Math.pow((fit_y - samples[i]) / constants.getNoise(), 2);
+            chisq += Math.pow((fit_y - samples[i]) / sensor.getNoise(channel, i), 2);
         }
 
         if (A > 0 && chisq < Double.POSITIVE_INFINITY) {

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperFitAlgorithm.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperFitAlgorithm.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperFitAlgorithm.java	Mon Nov  3 02:54:53 2014
@@ -1,7 +1,7 @@
 package org.hps.recon.tracking;
 
 import java.util.Collection;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+//import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
 import org.lcsim.event.RawTrackerHit;
 
 /**
@@ -11,7 +11,8 @@
 // TODO: Add class documentation.
 public interface ShaperFitAlgorithm {
 
-    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, ChannelConstants constants);
+    //===> public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, ChannelConstants constants);
+    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rawHit);
 
     public void setDebug(boolean debug);
 }

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperLinearFitAlgorithm.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperLinearFitAlgorithm.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperLinearFitAlgorithm.java	Mon Nov  3 02:54:53 2014
@@ -7,6 +7,7 @@
 import java.util.logging.Level;
 import java.util.logging.LogManager;
 import java.util.logging.Logger;
+
 import org.apache.commons.math3.linear.Array2DRowRealMatrix;
 import org.apache.commons.math3.linear.ArrayRealVector;
 import org.apache.commons.math3.linear.CholeskyDecomposition;
@@ -19,9 +20,12 @@
 import org.freehep.math.minuit.FunctionMinimum;
 import org.freehep.math.minuit.MnSimplex;
 import org.freehep.math.minuit.MnUserParameters;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
+
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
+import org.lcsim.event.RawTrackerHit;
+
 import org.hps.conditions.deprecated.HPSSVTConstants;
-import org.lcsim.event.RawTrackerHit;
 
 /**
  * Fast fitter; currently only fits single hits. Uses Tp from ChannelConstants;
@@ -34,13 +38,15 @@
     private final int nPulses;
     final double[] amplitudes;
     final double[] amplitudeErrors;
-    private ChannelConstants channelConstants;
+    //===> private ChannelConstants channelConstants;
+    HpsSiSensor sensor = null;
     private final double[] sigma = new double[HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES];
     private final double[] y = new double[HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES];
     private int firstUsedSample;
     private int nUsedSamples;
     private int firstFittedPulse;
     private int nFittedPulses;
+    private int channel; 
     private boolean debug = false;
     private static final Logger minuitLoggger = Logger.getLogger("org.freehep.math.minuit");
 
@@ -61,17 +67,27 @@
     }
 
     @Override
-    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, ChannelConstants constants) {
-        return this.fitShape(rth.getADCValues(), constants);
-    }
-
-    public Collection<ShapeFitParameters> fitShape(short[] samples, ChannelConstants constants) {
-        channelConstants = constants;
+    //===> public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, ChannelConstants constants) {
+    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth) {
+        short[] samples = rth.getADCValues();
+        HpsSiSensor sensor =(HpsSiSensor) rth.getDetectorElement();
+        int channel = rth.getIdentifierFieldValue("strip");
+        return fitShape(channel, samples, sensor);
+        //===> return this.fitShape(rth.getADCValues(), constants);
+    }
+
+    public Collection<ShapeFitParameters> fitShape(int channelNumber, short[] samples, HpsSiSensor siSensor) {
+    //===> public Collection<ShapeFitParameters> fitShape(short[] samples, ChannelConstants constants) {
+        // channelConstants = constants;
+    	this.sensor = siSensor;
+    	this.channel = channelNumber;
         double[] signal = new double[HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES];
 
         for (int i = 0; i < samples.length; i++) {
-            signal[i] = samples[i] - constants.getPedestal();
-            sigma[i] = constants.getNoise();
+            //===> signal[i] = samples[i] - constants.getPedestal();
+            signal[i] = samples[i] - sensor.getPedestal(channel, i);
+            //===> sigma[i] = constants.getNoise();
+            sigma[i] = sensor.getNoise(channel, i);
         }
 
 //        if (signal[0]>300.0) {
@@ -155,7 +171,8 @@
 
                 //subtract first pulse from fit input
                 for (int i = 0; i < samples.length; i++) {
-                    fitData[i] -= amplitudes[firstFittedPulse] * getAmplitude(HPSSVTConstants.SAMPLING_INTERVAL * i - frontFit.userState().value(0), channelConstants);
+                    //===> fitData[i] -= amplitudes[firstFittedPulse] * getAmplitude(HPSSVTConstants.SAMPLING_INTERVAL * i - frontFit.userState().value(0), channelConstants);
+                    fitData[i] -= amplitudes[firstFittedPulse] * getAmplitude(HPSSVTConstants.SAMPLING_INTERVAL * i - frontFit.userState().value(0), this.channel, this.sensor);
                 }
 
                 if (debug) {
@@ -298,7 +315,8 @@
 
         for (int j = 0; j < nUsedSamples; j++) {
             for (int i = 0; i < nFittedPulses; i++) {
-                sc_mat.setEntry(i, j, getAmplitude(HPSSVTConstants.SAMPLING_INTERVAL * (firstUsedSample + j) - times[i], channelConstants) / sigma[firstUsedSample + j]);
+                //===> sc_mat.setEntry(i, j, getAmplitude(HPSSVTConstants.SAMPLING_INTERVAL * (firstUsedSample + j) - times[i], channelConstants) / sigma[firstUsedSample + j]);
+                sc_mat.setEntry(i, j, getAmplitude(HPSSVTConstants.SAMPLING_INTERVAL * (firstUsedSample + j) - times[i], this.channel, this.sensor) / sigma[firstUsedSample + j]);
             }
             y_vec.setEntry(j, y[firstUsedSample + j] / sigma[firstUsedSample + j]);
             var_vec.setEntry(j, sigma[firstUsedSample + j] * sigma[firstUsedSample + j]);
@@ -334,11 +352,14 @@
         return chisq;
     }
 
-    private static double getAmplitude(double time, ChannelConstants channelConstants) {
+    //===> private static double getAmplitude(double time, ChannelConstants channelConstants) {
+    private static double getAmplitude(double time, int channel, HpsSiSensor sensor) {
         if (time < 0) {
             return 0;
         }
-        return (time / channelConstants.getTp()) * Math.exp(1 - time / channelConstants.getTp());
+        double tp = sensor.getShapeFitParameters(channel)[HpsSiSensor.TP_INDEX];
+        //===> return (time / channelConstants.getTp()) * Math.exp(1 - time / channelConstants.getTp());
+        return (time / tp) * Math.exp(1 - time / tp);
     }
 
     @Override

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperPileupFitAlgorithm.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperPileupFitAlgorithm.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/ShaperPileupFitAlgorithm.java	Mon Nov  3 02:54:53 2014
@@ -1,13 +1,12 @@
 package org.hps.recon.tracking;
 
 import java.util.Collection;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
 import org.lcsim.event.RawTrackerHit;
 
 /**
  *
  * @author Sho Uemura <[log in to unmask]>
- * @version $Id: $
  */
 public class ShaperPileupFitAlgorithm implements ShaperFitAlgorithm {
 
@@ -26,13 +25,16 @@
         refitThreshold = threshold;
     }
 
-    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, HPSSVTCalibrationConstants.ChannelConstants constants) {
-        Collection<ShapeFitParameters> fittedPulses = onePulseFitter.fitShape(rth, constants);
+    //===> public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth, HPSSVTCalibrationConstants.ChannelConstants constants) {
+    public Collection<ShapeFitParameters> fitShape(RawTrackerHit rth) {
+        //===> Collection<ShapeFitParameters> fittedPulses = onePulseFitter.fitShape(rth, constants);
+        Collection<ShapeFitParameters> fittedPulses = onePulseFitter.fitShape(rth);
         double singlePulseChiProb = fittedPulses.iterator().next().getChiProb();
         totalFits++;
         if (singlePulseChiProb < refitThreshold) {
             refitAttempts++;
-            Collection<ShapeFitParameters> doublePulse = twoPulseFitter.fitShape(rth, constants);
+            //===> Collection<ShapeFitParameters> doublePulse = twoPulseFitter.fitShape(rth, constants);
+            Collection<ShapeFitParameters> doublePulse = twoPulseFitter.fitShape(rth);
             double doublePulseChiProb = doublePulse.iterator().next().getChiProb();
             if (doublePulseChiProb > singlePulseChiProb) {
                 refitsAccepted++;

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackUtils.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackUtils.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackUtils.java	Mon Nov  3 02:54:53 2014
@@ -1,6 +1,5 @@
 package org.hps.recon.tracking;
 
-//--- hep ---//
 import hep.physics.matrix.SymmetricMatrix;
 import hep.physics.vec.BasicHep3Vector;
 import hep.physics.vec.Hep3Matrix;
@@ -13,16 +12,14 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.BeamlineConstants;
-import org.hps.conditions.deprecated.SvtUtils;
 import org.lcsim.detector.ITransform3D;
 import org.lcsim.detector.solids.Box;
 import org.lcsim.detector.solids.Point3D;
 import org.lcsim.detector.solids.Polygon3D;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.MCParticle;
 import org.lcsim.event.RawTrackerHit;
-//--- org.lcsim ---//
 import org.lcsim.event.Track;
 import org.lcsim.event.TrackerHit;
 import org.lcsim.fit.helicaltrack.HelicalTrackFit;
@@ -35,6 +32,8 @@
 import org.lcsim.recon.tracking.seedtracker.SeedCandidate;
 import org.lcsim.recon.tracking.seedtracker.SeedTrack;
 import org.lcsim.util.swim.Helix;
+import org.hps.conditions.deprecated.BeamlineConstants;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 
 /**
  * Assorted helper functions for the track and helix objects in lcsim. Re-use as much of HelixUtils
@@ -338,7 +337,6 @@
         Box sensorSolid = (Box) sensor.getGeometry().getLogicalVolume().getSolid();
         Polygon3D sensorFace = sensorSolid.getFacesNormalTo(new BasicHep3Vector(0, 0, 1)).get(0);
         if (debug) {
-            System.out.println("sensorContainsTrack:  Sensor: " + SvtUtils.getInstance().getDescription(sensor));
             System.out.println("sensorContainsTrack:  Track Position: " + trackPosition.toString());
         }
 
@@ -543,7 +541,9 @@
         List<TrackerHit> hitsOnTrack = track.getTrackerHits();
         for (TrackerHit hit : hitsOnTrack) {
             HelicalTrackHit hth = (HelicalTrackHit) hit;
-            if (SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit) hth.getRawHits().get(0)).getDetectorElement())) {
+            //===> if (SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit) hth.getRawHits().get(0)).getDetectorElement())) {
+            HpsSiSensor sensor = ((HpsSiSensor) ((RawTrackerHit) hth.getRawHits().get(0)).getDetectorElement());
+            if(sensor.isTopLayer()){
                 n[0] = n[0] + 1;
             } else {
                 n[1] = n[1] + 1;

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackerHitUtils.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackerHitUtils.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/TrackerHitUtils.java	Mon Nov  3 02:54:53 2014
@@ -11,7 +11,8 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.lcsim.detector.IDetectorElement;
 import org.lcsim.detector.ITransform3D;
 import org.lcsim.detector.identifier.ExpandedIdentifier;
@@ -20,6 +21,7 @@
 import org.lcsim.detector.identifier.IIdentifierDictionary;
 import org.lcsim.detector.identifier.IIdentifierHelper;
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensorElectrodes;
 import org.lcsim.event.RawTrackerHit;
@@ -31,7 +33,6 @@
 /**
  * 
  * @author Per Hansson <[log in to unmask]>
- * @version $Id: TrackerHitUtils.java,v 1.4 2013/10/15 00:33:53 phansson Exp $
  */
 // TODO: Add class documentation.
 public class TrackerHitUtils {
@@ -269,7 +270,8 @@
         IIdentifierDictionary dictionary = helper.getIdentifierDictionary();
 
         // Fill in the layer number
-        id.setValue(dictionary.getFieldIndex("layer"), SvtUtils.getInstance().getLayerNumber(sensor));
+        //===> id.setValue(dictionary.getFieldIndex("layer"), SvtUtils.getInstance().getLayerNumber(sensor));
+        id.setValue(dictionary.getFieldIndex("layer"), ((HpsSiSensor) sensor).getLayerNumber());
 
         // Pack and return the identifier
         return helper.pack(id);

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/DataProcessingModule.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/DataProcessingModule.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/DataProcessingModule.java	Mon Nov  3 02:54:53 2014
@@ -4,7 +4,7 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
@@ -13,9 +13,9 @@
 /**
  * 
  * @author Omar Moreno
- * @version $Id: DataProcessingModule.java,v 1.1 2013/03/15 21:05:28 meeg Exp $
  */
-public abstract class DataProcessingModule extends Driver{
+// TODO: Sandbox this class
+public abstract class DataProcessingModule extends Driver {
 
     Map<SiSensor, SvtDataBlocks> sensorToDataBlocks = new HashMap<SiSensor, SvtDataBlocks>();
 	
@@ -35,12 +35,12 @@
     
     protected abstract List<RawTrackerHit> findRawHits();
 	
-    @Override
-    public void detectorChanged(Detector detector){
+
+    /*public void detectorChanged(Detector detector){
         for(SiSensor sensor : SvtUtils.getInstance().getSensors()){
             sensorToDataBlocks.put(sensor, new SvtDataBlocks());
         }
-    }
+    }*/
     
 	@Override
 	public void process(EventHeader event){

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSDataProcessingModule.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSDataProcessingModule.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSDataProcessingModule.java	Mon Nov  3 02:54:53 2014
@@ -15,7 +15,7 @@
 //--- org.lcsim ---//
 import java.util.Set;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.readout.svt.SVTData;
 import org.lcsim.detector.IReadout;
 import org.lcsim.detector.tracker.silicon.SiSensor;
@@ -30,8 +30,8 @@
 /**
  *
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: HPSDataProcessingModule.java,v 1.3 2013/03/15 21:05:28 meeg Exp $
  */
+// TODO: Sandbox this class
 public class HPSDataProcessingModule extends Driver {
 	
 	// A map relating a sensor to all sample blocks collected from that sensor
@@ -92,10 +92,10 @@
 	@Override
 	public void detectorChanged(Detector detector) {
 
-		for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+		/*for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
 			// Map a sensor to its corresponding samples
 			sensorToSamplesMap.put(sensor, new HashMap<Integer, List<Double>>());
-		}
+		}*/
 	}
 
 	/**
@@ -219,10 +219,11 @@
 		for (Map.Entry<SiSensor, Map<Integer, List<Double>>> sensor : sensorToSamplesMap.entrySet()) {
 
 			// Get the FPGA number
-			fpgaNumber = SvtUtils.getInstance().getFPGA(sensor.getKey());
+			/* ===> fpgaNumber = SvtUtils.getInstance().getFPGA(sensor.getKey());
 			if(fpgaNumber > SVT_TOTAL_FPGAS || fpgaNumber < 0)
 				throw new RuntimeException("FPGA Number out of range!");
 			if(debug) System.out.println(this.getClass().getSimpleName() + ": FPGA Number: " + fpgaNumber);
+			===> */
 
 			// Clear the temporary list
 			svtFpgaData.clear();
@@ -265,10 +266,11 @@
 				rawHits.add(rawHit);
 
 				// Get the hybrid number
-				hybridNumber = SvtUtils.getInstance().getHybrid(sensor.getKey());
-				if(hybridNumber > TOTAL_HYBRIDS_PER_FPGA || hybridNumber < 0)
+				//===> hybridNumber = SvtUtils.getInstance().getHybrid(sensor.getKey());
+				/* ==> if(hybridNumber > TOTAL_HYBRIDS_PER_FPGA || hybridNumber < 0)
 					throw new RuntimeException("Hybrid number is out of range!");
 				//if(debug) System.out.println(this.getClass().getSimpleName() + ": Hybrid Number: " + hybridNumber);
+				===> */
 
 				// Find the APV number. Note that strip numbering is from 639 to 0
 				apvNumber = (TOTAL_APV25_PER_HYBRID - 1) - (int) Math.floor(samples.getKey()/128);
@@ -284,14 +286,14 @@
 				//if(debug) System.out.println(this.getClass().getSimpleName() + ": Raw Channel Number: " + rawChannel);
 				
 				// Create an svtData packet
-				SVTData data = new SVTData(hybridNumber, apvNumber, rawChannel, fpgaNumber, adc);
+				/* ===> SVTData data = new SVTData(hybridNumber, apvNumber, rawChannel, fpgaNumber, adc);
 				svtData.add(data);
 				svtFpgaData.add(data);
-				
+				===> */
 				samples.getValue().clear();
 			}
 
-			HPSSVTDataBuffer.addToBuffer(svtFpgaData, fpgaNumber);
+			//===> HPSSVTDataBuffer.addToBuffer(svtFpgaData, fpgaNumber);
 		}
 		if(debug) System.out.println(this.getClass().getName() + ": Total RawTrackerHits before cuts: " + rawHitsNoCuts.size());
 		if(debug) System.out.println(this.getClass().getName() + ": Total RawTrackerHits: " + rawHits.size());

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSSiSensorReadout.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSSiSensorReadout.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/HPSSiSensorReadout.java	Mon Nov  3 02:54:53 2014
@@ -20,7 +20,7 @@
 import org.apache.commons.math.distribution.BinomialDistributionImpl;
 import org.apache.commons.math.distribution.NormalDistribution;
 import org.apache.commons.math.distribution.NormalDistributionImpl;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.readout.ecal.ClockSingleton;
 //--- hps-java ---//
 import org.hps.recon.tracking.apv25.HPSAPV25.APV25Channel.APV25AnalogPipeline;
@@ -43,8 +43,8 @@
  * Class used to Readout HPS APV25's
  *
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: HPSSiSensorReadout.java,v 1.12 2013/03/15 21:05:28 meeg Exp $
  */
+// TODO: Sandbox this classes
 public class HPSSiSensorReadout extends Driver {
 
     //
@@ -142,7 +142,7 @@
         super.detectorChanged(detector);
 
         // Instantiate all maps
-        for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+        /*for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
 
             sensorToPipelineMap.put(sensor, new HashMap<Integer, APV25AnalogPipeline>());
 
@@ -158,7 +158,7 @@
 
             sensorToAnalogDataMap.put(sensor, new HashMap<Integer, double[]>());
             sensorToDigitalDataMap.put(sensor, new HashMap<Integer, double[]>());
-        }
+        }*/
     }
 
     /**
@@ -193,10 +193,10 @@
         }
 
         // Loop over all sensors
-        for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
+        /*for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
             // Readout the sensors
             readoutSensor(sensor);
-        }
+        }*/
 
         // If a trigger is received readout the APV25 and digitize all hits
         if (HPSAPV25.readoutBit) {

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/RearTransitionModule.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/RearTransitionModule.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/RearTransitionModule.java	Mon Nov  3 02:54:53 2014
@@ -1,25 +1,22 @@
 package org.hps.recon.tracking.apv25;
 
-//--- java ---//
-//--- Constants ---//
-import static org.hps.conditions.deprecated.HPSSVTConstants.TOTAL_STRIPS_PER_SENSOR;
 
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
 import org.hps.conditions.deprecated.HPSSVTConstants;
+import static org.hps.conditions.deprecated.HPSSVTConstants.TOTAL_STRIPS_PER_SENSOR;
 import org.hps.util.RandomGaussian;
-//--- org.lcsim ---//
+
 import org.lcsim.event.EventHeader;
 import org.lcsim.util.Driver;
-//--- hps-java ---//
 
 /**
  * 
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: RearTransitionModule.java,v 1.2 2013/04/25 22:11:14 meeg Exp $
  */
+// TODO: Sandbox this class. 
 public class RearTransitionModule extends Driver {
 
     String apv25AnalogDataCollectionName = "APV25AnalogData";
@@ -116,15 +113,20 @@
                     apv25Output[index] *= (HPSSVTConstants.MIP/HPSSVTConstants.MULTIPLEXER_GAIN);
 
                     // Digitize the signal 
+                   
+                    // FIXME: Update to use the new conditions system at some point. 
+                    /* ===> 
                     apv25Output[index] *= HPSSVTCalibrationConstants.getGain(analogDatum.getSensor(), physicalChannel);
 
                     // Add pedestal and noise
                     double pedestal = HPSSVTCalibrationConstants.getPedestal(analogDatum.getSensor(), physicalChannel);
                     double noise = HPSSVTCalibrationConstants.getNoise(analogDatum.getSensor(), physicalChannel);
+                    
                     if(!noiseless)
                         apv25Output[index] += RandomGaussian.getGaussian(pedestal, noise);            
                     else
                         apv25Output[index] += pedestal;
+                    ===> */
                 }
 
                 // Add the digital data to the list

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtHalfModule.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtHalfModule.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtHalfModule.java	Mon Nov  3 02:54:53 2014
@@ -1,18 +1,16 @@
 package org.hps.recon.tracking.apv25;
 
-//--- constants ---//
 import static org.hps.conditions.deprecated.HPSSVTConstants.TOTAL_APV25_PER_HYBRID;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+import org.hps.conditions.deprecated.HPSSVTConstants;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTConstants;
-//--- lcsim ---//
 import org.lcsim.detector.tracker.silicon.SiSensor;
 
 /**
  * 
  * @author Omar Moreno
- * @version $Id: SvtHalfModule.java,v 1.7 2013/04/25 22:11:14 meeg Exp $
  */
+// TODO: Sandbox this class. 
 public class SvtHalfModule {
 
     private SiSensor sensor;
@@ -30,13 +28,14 @@
                 int physicalChannel = 639 - (chip*128 + 127 - channel);
                 
                 // Mark all bad channels which were found during QA
-                if(HPSSVTCalibrationConstants.isBadChannel(sensor, physicalChannel)){
+               // FIXME: Update to use the new conditions system at some point. 
+                /* ===> if(HPSSVTCalibrationConstants.isBadChannel(sensor, physicalChannel)){
                     apv25[chip].getChannel(channel).markAsBadChannel();
                 }
 
                 // Set the shaping time
                 double tp = HPSSVTCalibrationConstants.getTShaping(sensor, physicalChannel);
-                apv25[chip].getChannel(channel).setShapingTime(tp);
+                apv25[chip].getChannel(channel).setShapingTime(tp); <=== */
             }
         }
     }

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtReadout.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtReadout.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/SvtReadout.java	Mon Nov  3 02:54:53 2014
@@ -1,7 +1,6 @@
 
 package org.hps.recon.tracking.apv25;
 
-//--- java ---//
 import static org.hps.conditions.deprecated.HPSSVTConstants.TOTAL_APV25_CHANNELS;
 import static org.hps.conditions.deprecated.HPSSVTConstants.TOTAL_NUMBER_OF_SAMPLES;
 import static org.hps.conditions.deprecated.HPSSVTConstants.TOTAL_STRIPS_PER_SENSOR;
@@ -16,9 +15,8 @@
 import java.util.Set;
 
 import org.hps.conditions.deprecated.HPSSVTConstants;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.readout.ecal.ClockSingleton;
-//--- lcsim ---//
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
@@ -30,14 +28,12 @@
 import org.lcsim.recon.tracking.digitization.sisim.SiSensorSim;
 import org.lcsim.recon.tracking.digitization.sisim.config.SimTrackerHitReadoutDriver;
 import org.lcsim.util.Driver;
-//--- Constants ---//
-//--- hps-java ---//
 
 /**
  * 
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: SvtReadout.java,v 1.12 2013/04/25 22:11:14 meeg Exp $
  */
+// TODO: Sandbox this class
 public class SvtReadout extends Driver {
 
     private Set<SvtHalfModule> halfModules = new HashSet<SvtHalfModule>();
@@ -122,9 +118,9 @@
         super.detectorChanged(detector);
         
         // Instantiate all SVT Half modules
-        for(SiSensor sensor : SvtUtils.getInstance().getSensors()){
+        /*for(SiSensor sensor : SvtUtils.getInstance().getSensors()){
             halfModules.add(new SvtHalfModule(sensor));
-        }
+        }*/
         
         // Set the trigger latency
         for(SvtHalfModule halfModule : halfModules){
@@ -256,12 +252,12 @@
                     double charge = pedestalRun ? 0 : electrodeData.getCharge();
                     
                     if(debug){
-                        if(charge > 0){ 
+                        /*if(charge > 0){ 
                         	System.out.println(this.getClass().getSimpleName() 
                         		+ ": Sensor: " + SvtUtils.getInstance().getDescription(halfModule.getSensor()) 
                         		+ ": Injecting charge " + charge + " into channel " + physicalChannel);
                         	sensorToChannel.get(halfModule.getSensor()).add(physicalChannel);
-                        }
+                        }*/
                     }
                     
                     // Inject the charge into the APV25 amplifier chain
@@ -295,9 +291,6 @@
             		if(sensorToChannel.get(halfModule.getSensor()).contains(physicalChannel)){
             			int channel = physicalChannel - TOTAL_STRIPS_PER_SENSOR
                                 + halfModule.getAPV25Number(physicalChannel)*TOTAL_APV25_CHANNELS + (TOTAL_APV25_CHANNELS - 1); 
-            			System.out.println("\nPhysical Channel: " + physicalChannel 
-            					+ " Sensor: " + SvtUtils.getInstance().getDescription(halfModule.getSensor())
-            					+ apv25[halfModule.getAPV25Number(physicalChannel)].getChannel(channel).getPipeline().toString() + "\n");
             		}
             	}
             }

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/TestRunDataProcessingModule.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/TestRunDataProcessingModule.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/apv25/TestRunDataProcessingModule.java	Mon Nov  3 02:54:53 2014
@@ -4,7 +4,7 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
+//===> import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
 import org.lcsim.detector.IReadout;
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
 import org.lcsim.detector.tracker.silicon.SiSensor;
@@ -16,8 +16,8 @@
 /**
  * 
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: TestRunDataProcessingModule.java,v 1.1 2013/03/15 21:05:28 meeg Exp $
  */
+// TODO: Sandbox this class. 
 public class TestRunDataProcessingModule extends DataProcessingModule {
 
     int nSamplesAboveThreshold = 1;    // Number of samples above noise threshold 
@@ -71,7 +71,8 @@
 
             for(int channel = 0; channel < 639; channel++){
             	
-            	if(HPSSVTCalibrationConstants.isBadChannel(sensor.getKey(), channel)) continue;
+                // FIXME: Update to use the new conditions system at some point. 
+            	//===> if(HPSSVTCalibrationConstants.isBadChannel(sensor.getKey(), channel)) continue;
             	
                 short[] samples = blocks.getSamples(channel);  
 
@@ -104,8 +105,11 @@
     /**
      * 
      */
+    // FIXME: Update to use the new conditions system at some point. 
     private boolean samplesAboveThreshold(SiSensor sensor, int channel, short[] samples){
-        // Number of samples above threshold
+        
+    	/* ===> 
+    	// Number of samples above threshold
         int nSamplesAboveThreshold = 0;
 
         // Get the pedestal and noise for this channel
@@ -121,6 +125,7 @@
 
         // If the prerequisite number of samples are above threshold return true
         if(nSamplesAboveThreshold >= this.nSamplesAboveThreshold ) return true;
+        ===> */
         return false;
     }
 

Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/GBLOutput.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/GBLOutput.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/GBLOutput.java	Mon Nov  3 02:54:53 2014
@@ -75,7 +75,7 @@
      * @param bfield magnetic field in Tesla
      */
     GBLOutput(String outputFileName,Hep3Vector bfield) {
-    	System.out.printf("name \"%s\" \n", outputFileName);
+    	//System.out.printf("name \"%s\" \n", outputFileName);
     	if(!outputFileName.equalsIgnoreCase("")) {
     		textFile = new GBLFileIO(outputFileName);
     	}

Modified: java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java	Mon Nov  3 02:54:53 2014
@@ -31,7 +31,7 @@
 import org.apache.commons.cli.ParseException;
 import org.apache.commons.cli.PosixParser;
 import org.hps.conditions.deprecated.HPSSVTSensorSetup;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.CoordinateTransformations;
 import org.jdom.Document;
 import org.jdom.Element;
@@ -43,6 +43,7 @@
 import org.lcsim.detector.IDetectorElement;
 import org.lcsim.detector.ITransform3D;
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.geometry.Detector;
 import org.lcsim.geometry.GeometryReader;
@@ -362,13 +363,15 @@
         //System.out.printf("%d sensors\n",sensors.size());
         for (SiSensor module: sensors) {
             // Create DAQ Maps
-            if (!SvtUtils.getInstance().isSetup()) {
+            /* ===> if (!SvtUtils.getInstance().isSetup()) {
                 SvtUtils.getInstance().setup(det);
-            }
-        	boolean isTop = SvtUtils.getInstance().isTopLayer(module);
+            } ===> */
+        	//===> boolean isTop = SvtUtils.getInstance().isTopLayer(module);
+        	boolean isTop = ((HpsSiSensor) module).isTopLayer();
         	int h = par.getHalf();
         	if ((isTop && h == 1) || (!isTop && h == 2)) {
-        		int layer = SvtUtils.getInstance().getLayerNumber(module);
+        		int layer = ((HpsSiSensor) module).getLayerNumber();
+        		//===> int layer = SvtUtils.getInstance().getLayerNumber(module);
         		if (layer == par.getSensor()) {
         			//found match
         			return module;

Modified: java/trunk/users/src/main/java/org/hps/users/holly/EcalClustererCosmics.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/holly/EcalClustererCosmics.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/holly/EcalClustererCosmics.java	Mon Nov  3 02:54:53 2014
@@ -169,7 +169,7 @@
             // Did we find a seed?
             if (isSeed) {
                 // Make a cluster from the hit list.
-                HPSEcalCluster cluster = new HPSEcalCluster(hit);
+                HPSEcalCluster cluster = new HPSEcalCluster(hit.getCellID());
                 cluster.addHit(hit);
                 for (CalorimeterHit clusHit : neighborHits) {
                     cluster.addHit(clusHit);

Modified: java/trunk/users/src/main/java/org/hps/users/meeg/LCIOTrackAnalysis.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/meeg/LCIOTrackAnalysis.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/meeg/LCIOTrackAnalysis.java	Mon Nov  3 02:54:53 2014
@@ -8,9 +8,11 @@
 import java.util.Map;
 import java.util.Set;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.identifier.Identifier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.MCParticle;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.RelationalTable;
@@ -20,8 +22,9 @@
 /**
  *
  * @author Sho Uemura <[log in to unmask]>
- * @version $Id: LCIOTrackAnalysis.java,v 1.3 2013/10/24 18:11:43 meeg Exp $
  */
+// TODO: This is an exact duplicate of the class in the analysis.example package.
+//		 One of them should be sandboxed
 public class LCIOTrackAnalysis {
 
     protected Track track;
@@ -73,15 +76,19 @@
                 int module = -1;
                 List<RawTrackerHit> rawHits = cl.getRawHits();
 //                System.out.println("RawHits: " + rawHits.size());
+                HpsSiSensor sensor = null; 
                 for (RawTrackerHit rawHit : rawHits) {
 //                    System.out.println(rawHit.getCellID());
                     IIdentifier id = new Identifier(rawHit.getCellID());
-                    int newLayer = SvtUtils.getInstance().getHelper().getValue(id, "layer");
+                    //===> int newLayer = SvtUtils.getInstance().getHelper().getValue(id, "layer");
+                    sensor = ((HpsSiSensor) rawHit.getDetectorElement());
+                    int newLayer = sensor.getLayerNumber();
                     if (layer != -1 && layer != newLayer) {
                         System.out.format("TrackerHit has hits from multiple layers: %d and %d\n", layer, newLayer);
                     }
                     layer = newLayer;
-                    int newModule = SvtUtils.getInstance().getHelper().getValue(id, "module");
+                    //===> int newModule = SvtUtils.getInstance().getHelper().getValue(id, "module");
+                    int newModule = sensor.getModuleNumber();
                     if (module != -1 && module != newModule) {
                         System.out.format("TrackerHit has hits from multiple modules: %d and %d\n", module, newModule);
                     }
@@ -98,7 +105,8 @@
                 _hitLocationPerLayer.put(layer, new BasicHep3Vector(cl.getPosition()));
                 _nhitsNew++;
 
-                boolean isAxial = SvtUtils.getInstance().isAxial(SvtUtils.getInstance().getSensor(module, layer - 1));
+                //===> boolean isAxial = SvtUtils.getInstance().isAxial(SvtUtils.getInstance().getSensor(module, layer - 1));
+                boolean isAxial = sensor.isAxial(); 
                 if (isAxial) {
                     _nAxialhits++;
                 } else {

Modified: java/trunk/users/src/main/java/org/hps/users/mgraham/HelicalTrackHitResidualsDriver.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/mgraham/HelicalTrackHitResidualsDriver.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/mgraham/HelicalTrackHitResidualsDriver.java	Mon Nov  3 02:54:53 2014
@@ -15,11 +15,12 @@
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.EventQuality;
 import org.hps.recon.tracking.TrackUtils;
 import org.hps.users.phansson.TrigRateDriver;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.Track;
@@ -139,7 +140,9 @@
                 //htc.setTrackDirection(trk);
                 Map<String,Double> res_track = TrackUtils.calculateTrackHitResidual(hth, trk, this._includeMS);
                 boolean isTop = false;
-                if(SvtUtils.getInstance().isTopLayer((SiSensor)((RawTrackerHit)hth.getRawHits().get(0)).getDetectorElement())) {
+                HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) hth.getRawHits().get(0)).getDetectorElement();
+                //===> if(SvtUtils.getInstance().isTopLayer((SiSensor)((RawTrackerHit)hth.getRawHits().get(0)).getDetectorElement())) {
+                if(sensor.isTopLayer()) {
                     isTop = true;
                 }
                 int layer = hth.Layer();

Modified: java/trunk/users/src/main/java/org/hps/users/mgraham/SVTRawTrackerHitThresholdDriver.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/mgraham/SVTRawTrackerHitThresholdDriver.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/mgraham/SVTRawTrackerHitThresholdDriver.java	Mon Nov  3 02:54:53 2014
@@ -3,8 +3,8 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.geometry.Detector;
@@ -14,6 +14,8 @@
  * 
  * @author Matt Graham
  */
+// TODO: Check that this Driver works as expected after it was updated to use 
+// 		 the database conditions system.
 public class SVTRawTrackerHitThresholdDriver extends Driver {
 
     private String rawTrackerHitCollectionName = "RawTrackerHitMaker_RawTrackerHits";
@@ -21,7 +23,6 @@
     private String calibFileName = "foobar";
     private String trackerName = "Tracker";
     private Detector detector;
-    private List<SiSensor> sensors;
     private double noiseThreshold = 3;
     private int nhitsAboveNoise = 2;
 
@@ -59,14 +60,12 @@
 
             // Increment strip hit count.
             for (RawTrackerHit hit : rawTrackerHits) {
-                SiSensor sensor = (SiSensor) hit.getDetectorElement();
+                HpsSiSensor sensor = (HpsSiSensor) hit.getDetectorElement();
                 int strip = hit.getIdentifierFieldValue("strip");
                 short[] adcVal = hit.getADCValues();
-                double ped = HPSSVTCalibrationConstants.getPedestal(sensor, strip);
-                double noise = HPSSVTCalibrationConstants.getNoise(sensor, strip);
                 int nAbove = 0;
                 for (int i = 0; i < 6; i++) {
-                    double pedSubNorm = (adcVal[i] - ped) / noise;
+                    double pedSubNorm = (adcVal[i] - sensor.getPedestal(strip, i)) / sensor.getNoise(strip, i);
                     if (pedSubNorm > noiseThreshold)
                         nAbove++;
                 }

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/PlotUtils.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/PlotUtils.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/PlotUtils.java	Mon Nov  3 02:54:53 2014
@@ -3,16 +3,21 @@
 import hep.aida.ICloud2D;
 import hep.aida.IFitResult;
 import hep.aida.IFitter;
-//--- hep ---//
 import hep.aida.IHistogram1D;
 import hep.aida.IHistogram2D;
 import hep.aida.IPlotter;
 import hep.aida.IPlotterStyle;
 
-import org.hps.conditions.deprecated.SvtUtils;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.util.aida.AIDA;
 
+/**
+ * A set of plotting utilities.
+ * 
+ * @author Omar Moreno <[log in to unmask]>
+ *
+ */
 public class PlotUtils {
 
 	// Default ctor
@@ -87,13 +92,13 @@
      */
     public static int getPlotterRegion(SiSensor sensor) {
 
-        int layer = SvtUtils.getInstance().getLayerNumber(sensor);
+        int layer = ((HpsSiSensor) sensor).getLayerNumber();  
 
         // Compute the sensor's x and y grid coordinates and then translate to region number.
         int ix = (layer - 1) / 2;
         int iy = 0;
-        if (!SvtUtils.getInstance().isTopLayer(sensor)) {
-            iy += 2;
+        if (!((HpsSiSensor) sensor).isTopLayer()){ 
+        	iy += 2;
         }
         if (layer % 2 == 0) {
             iy += 1;

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/SimpleSvtTrigger.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/SimpleSvtTrigger.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/SimpleSvtTrigger.java	Mon Nov  3 02:54:53 2014
@@ -5,10 +5,8 @@
 import java.util.List;
 import java.util.Set;
 
-import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.FindableTrack;
 import org.hps.recon.tracking.apv25.Apv25Full;
-import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.MCParticle;
 import org.lcsim.event.SimTrackerHit;
@@ -16,6 +14,7 @@
 import org.lcsim.util.Driver;
 //--- hps-java ---//
 
+// TODO: Sandbox this class
 public class SimpleSvtTrigger extends Driver {
     
     FindableTrack findable = null;
@@ -133,10 +132,10 @@
      */
     private boolean isSameSvtVolume(Set<SimTrackerHit> simTrackerHits){
         int volumeIndex = 0;
-        for(SimTrackerHit simTrackerHit : simTrackerHits){
+        /*for(SimTrackerHit simTrackerHit : simTrackerHits){
             if(SvtUtils.getInstance().isTopLayer((SiSensor) simTrackerHit.getDetectorElement())) volumeIndex++;
             else volumeIndex--;
-        }
+        }*/
         return Math.abs(volumeIndex) == simTrackerHits.size();
     }
     

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitCorrelations.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitCorrelations.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitCorrelations.java	Mon Nov  3 02:54:53 2014
@@ -1,26 +1,21 @@
 package org.hps.users.omoreno;
 
-//--- java ---//
-//--- aida ---//
 import hep.aida.IPlotter;
 
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.SvtUtils;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.geometry.Detector;
-//--- org.lcsim ---//
 import org.lcsim.util.Driver;
 import org.lcsim.util.aida.AIDA;
-//--- hps-java ---//
 
 /**
- * 
- * @author Omar Moreno
- * @version $Id: SvtHitCorrelations.java,v 1.2 2013/10/25 19:45:01 jeremy Exp $
+ * Driver to find the correlations between stereo hits.
+ *  
+ * @author Omar Moreno <[log in to unmask]>
  *
  */
 public class SvtHitCorrelations extends Driver {
@@ -143,29 +138,29 @@
 		
 		for(RawTrackerHit rawHit1 : rawHits){
 	
-			SiSensor sensor1 = (SiSensor) rawHit1.getDetectorElement();
-			int layer1 = (int) Math.ceil(((double) SvtUtils.getInstance().getLayerNumber(sensor1))/2);
+			HpsSiSensor sensor1 = (HpsSiSensor) rawHit1.getDetectorElement();
+			int layer1 = (int) Math.ceil(((double) sensor1.getLayerNumber())/2);
 			int channel1 = rawHit1.getIdentifierFieldValue("strip");
 			
 			for(RawTrackerHit rawHit2 : rawHits){
 			
-				SiSensor sensor2 = (SiSensor) rawHit2.getDetectorElement();
-				int layer2 = (int) Math.ceil(((double) SvtUtils.getInstance().getLayerNumber(sensor2))/2);
+				HpsSiSensor sensor2 = (HpsSiSensor) rawHit2.getDetectorElement();
+				int layer2 = (int) Math.ceil(((double) sensor2.getLayerNumber())/2);
 				int channel2 = rawHit2.getIdentifierFieldValue("strip");
 			
-				if(SvtUtils.getInstance().isTopLayer(sensor1) && SvtUtils.getInstance().isTopLayer(sensor2)){
-					if(SvtUtils.getInstance().isAxial(sensor1) && SvtUtils.getInstance().isAxial(sensor2) && taa){
+				if(sensor1.isTopLayer() && sensor2.isTopLayer()){
+					if(sensor1.isAxial() && sensor2.isAxial() && taa){
 						String plotName = "Top Channel Correlation: Axial Layer " + layer1 + " vs Axial Layer " + layer2;
 						aida.histogram2D(plotName).fill(channel1, channel2);
-					} else if(SvtUtils.getInstance().isAxial(sensor1) && !SvtUtils.getInstance().isAxial(sensor2) && tas){
+					} else if(sensor1.isAxial() && !sensor2.isAxial() && tas){
 						String plotName = "Top Channel Correlation: Axial Layer " + layer1 + " vs Stereo Layer " + layer2;
 						aida.histogram2D(plotName).fill(channel1, channel2);
 					}
-				} else if(!SvtUtils.getInstance().isTopLayer(sensor1) && !SvtUtils.getInstance().isTopLayer(sensor2) && baa){
-					if(SvtUtils.getInstance().isAxial(sensor1) && SvtUtils.getInstance().isAxial(sensor2)){
+				} else if(!sensor1.isTopLayer() && !sensor2.isTopLayer() && baa){
+					if(sensor1.isAxial() && sensor2.isAxial()){
 						String plotName = "Bottom Channel Correlation: Axial Layer " + layer1 + " vs Axial Layer " + layer2;
 						aida.histogram2D(plotName).fill(channel1, channel2);
-					} else if(SvtUtils.getInstance().isAxial(sensor1) && !SvtUtils.getInstance().isAxial(sensor2) && bas){
+					} else if(sensor1.isAxial() && !sensor2.isAxial() && bas){
 						String plotName = "Bottom Channel Correlation: Axial Layer " + layer1 + " vs Stereo Layer " + layer2;
 						aida.histogram2D(plotName).fill(channel1, channel2);
 					}

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitEfficiency.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitEfficiency.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/SvtHitEfficiency.java	Mon Nov  3 02:54:53 2014
@@ -1,7 +1,6 @@
 package org.hps.users.omoreno;
 
 
-//--- java ---//
 import hep.aida.ICloud2D;
 import hep.aida.IHistogram1D;
 import hep.aida.IHistogram2D;
@@ -16,16 +15,12 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.SvtUtils;
-import org.hps.recon.ecal.HPSEcalCluster;
-import org.hps.recon.tracking.TrackUtils;
-import org.hps.recon.tracking.TrackerHitUtils;
 import org.lcsim.detector.ITransform3D;
 import org.lcsim.detector.solids.Box;
 import org.lcsim.detector.solids.Point3D;
 import org.lcsim.detector.solids.Polygon3D;
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.detector.tracker.silicon.SiStrips;
 import org.lcsim.event.EventHeader;
@@ -33,11 +28,19 @@
 import org.lcsim.event.TrackerHit;
 import org.lcsim.fit.helicaltrack.HelicalTrackHit;
 import org.lcsim.geometry.Detector;
-//--- lcsim ---//
 import org.lcsim.util.Driver;
 import org.lcsim.util.aida.AIDA;
-//--- hps-java ---//
-
+
+import org.hps.recon.ecal.HPSEcalCluster;
+import org.hps.recon.tracking.TrackUtils;
+import org.hps.recon.tracking.TrackerHitUtils;
+
+/**
+ * Analysis driver used to calculate the hit efficiency of the SVT.
+ * 
+ * @author Omar Moreno <[log in to unmask]>
+ *
+ */
 public class SvtHitEfficiency extends Driver {
 
 	private AIDA aida;
@@ -45,6 +48,7 @@
     private List<IHistogram2D> histos2D = new ArrayList<IHistogram2D>();
     private List<IPlotter> plotters = new ArrayList<IPlotter>();
     private Map<SiSensor, Map<Integer, Hep3Vector>> stripPositions = new HashMap<SiSensor, Map<Integer, Hep3Vector>>(); 
+    private List<HpsSiSensor> sensors = null;
     TrackerHitUtils trackerHitUtils = new TrackerHitUtils();
     
     boolean debug = false;
@@ -79,6 +83,7 @@
     // Constants
     public static final double SENSOR_LENGTH = 98.33; // mm
     public static final double SENSOR_WIDTH = 38.3399; // mm
+    private static final String SUBDETECTOR_NAME = "Tracker";
 
     /**
      * Default Ctor
@@ -101,6 +106,9 @@
     }
     
     public void detectorChanged(Detector detector){
+    	
+    	// Get the list of sensors
+    	sensors = detector.getSubdetector(SUBDETECTOR_NAME).getDetectorElement().findDescendants(HpsSiSensor.class);
     	
         // setup AIDA
         aida = AIDA.defaultInstance();
@@ -114,7 +122,7 @@
         // Create a Map from sensor to bad channels and from bad channels to
         // strip position
         for(ChargeCarrier carrier : ChargeCarrier.values()){
-            for(SiSensor sensor : SvtUtils.getInstance().getSensors()){ 
+            for(SiSensor sensor : sensors){ 
                 if(sensor.hasElectrodesOnSide(carrier)){ 
                     stripPositions.put(sensor, new HashMap<Integer, Hep3Vector>());
                     SiStrips strips = (SiStrips) sensor.getReadoutElectrodes(carrier);     
@@ -182,24 +190,24 @@
                 title = "Track Position - Layer " + index + " - Difference";
                 cloud2D = aida.cloud2D(title);
                 PlotUtils.setup2DRegion(plotters.get(plotterIndex), title, 1, "x [mm]", "y [mm]", cloud2D, style);
-                sensor = SvtUtils.getInstance().getBottomSensor(layerNumber, 0);
-                title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
+                //sensor = SvtUtils.getInstance().getBottomSensor(layerNumber, 0);
+                //title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
                 histo1D = aida.histogram1D(title, 640, 0, 639);
                 histos1D.add(histo1D);
                 PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 2, "Channel #", histo1D);
-                sensor = SvtUtils.getInstance().getTopSensor(layerNumber, 0);
-                title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
+                //sensor = SvtUtils.getInstance().getTopSensor(layerNumber, 0);
+                //title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
                 histo1D = aida.histogram1D(title, 640, 0, 639);
                 histos1D.add(histo1D);
                 PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 4, "Channel #", histo1D);
                 layerNumber++;
-                sensor = SvtUtils.getInstance().getBottomSensor(layerNumber, 0);
-                title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
+                //sensor = SvtUtils.getInstance().getBottomSensor(layerNumber, 0);
+                //title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
                 histo1D = aida.histogram1D(title, 640, 0, 639);
                 histos1D.add(histo1D);
                 PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 3, "Channel #", histo1D);
-                sensor = SvtUtils.getInstance().getTopSensor(layerNumber, 0);
-                title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
+                //sensor = SvtUtils.getInstance().getTopSensor(layerNumber, 0);
+                //title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
                 histo1D = aida.histogram1D(title, 640, 0, 639);
                 histos1D.add(histo1D);
                 PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 5, "Channel #", histo1D);
@@ -338,14 +346,14 @@
     		
     		List<SiSensor> sensors = new ArrayList<SiSensor>();
     		if(TrackUtils.getZ0(track) > 0){
-    			sensors.add(SvtUtils.getInstance().getTopSensor(layer, 0));
-        		sensors.add(SvtUtils.getInstance().getTopSensor(layer+1, 0));
+    			//sensors.add(SvtUtils.getInstance().getTopSensor(layer, 0));
+        		//sensors.add(SvtUtils.getInstance().getTopSensor(layer+1, 0));
     		} else { 
-    			sensors.add(SvtUtils.getInstance().getBottomSensor(layer, 0));
-        		sensors.add(SvtUtils.getInstance().getBottomSensor(layer+1, 0));
+    			//sensors.add(SvtUtils.getInstance().getBottomSensor(layer, 0));
+        		//sensors.add(SvtUtils.getInstance().getBottomSensor(layer+1, 0));
     		}
-    		aida.histogram1D(SvtUtils.getInstance().getDescription(sensors.get(0)) + " - Occupancy").fill(this.findIntersectingChannel(frontTrackPos, sensors.get(0)));
-            aida.histogram1D(SvtUtils.getInstance().getDescription(sensors.get(1)) + " - Occupancy").fill(this.findIntersectingChannel(rearTrackPos, sensors.get(1)));
+    		//aida.histogram1D(SvtUtils.getInstance().getDescription(sensors.get(0)) + " - Occupancy").fill(this.findIntersectingChannel(frontTrackPos, sensors.get(0)));
+            //aida.histogram1D(SvtUtils.getInstance().getDescription(sensors.get(1)) + " - Occupancy").fill(this.findIntersectingChannel(rearTrackPos, sensors.get(1)));
     		
            if(debug)
         	   System.out.println(this.getClass().getSimpleName() + ": Stereo hit was not found.");
@@ -371,13 +379,13 @@
         
         
         
-        List<SiSensor> sensors = new ArrayList<SiSensor>();
+        List<HpsSiSensor> sensors = new ArrayList<HpsSiSensor>();
         if(TrackUtils.getZ0(track) > 0){
-           sensors.add(SvtUtils.getInstance().getTopSensor(layer, 0));
-           sensors.add(SvtUtils.getInstance().getTopSensor(layer + 1, 0));
+           //sensors.add(SvtUtils.getInstance().getTopSensor(layer, 0));
+           //sensors.add(SvtUtils.getInstance().getTopSensor(layer + 1, 0));
         } else {
-            sensors.add(SvtUtils.getInstance().getBottomSensor(layer, 0));
-            sensors.add(SvtUtils.getInstance().getBottomSensor(layer + 1, 0));
+           //sensors.add(SvtUtils.getInstance().getBottomSensor(layer, 0));
+           //sensors.add(SvtUtils.getInstance().getBottomSensor(layer + 1, 0));
         }
         
         Hep3Vector frontSensorPos = sensors.get(0).getGeometry().getPosition();
@@ -432,7 +440,6 @@
 			}
 		}
     
-		this.printDebug(SvtUtils.getInstance().getDescription(sensor) + ": Track intersects physical channel " + intersectingChannel);
 		
 		return intersectingChannel;
     }
@@ -440,16 +447,16 @@
     /**
      *
      */
-    public boolean sensorContainsTrack(Hep3Vector trackPosition, SiSensor sensor){
+    public boolean sensorContainsTrack(Hep3Vector trackPosition, HpsSiSensor sensor){
 
     	
     	if(maskBadChannels){
     		int intersectingChannel = this.findIntersectingChannel(trackPosition, sensor);
     		if(intersectingChannel == 0 || intersectingChannel == 638) return false;
     	    
-    		if(HPSSVTCalibrationConstants.isBadChannel(sensor, intersectingChannel) 
-    				|| HPSSVTCalibrationConstants.isBadChannel(sensor, intersectingChannel+1) 
-    				|| HPSSVTCalibrationConstants.isBadChannel(sensor, intersectingChannel-1)){
+    		if(sensor.isBadChannel(intersectingChannel) 
+    				|| sensor.isBadChannel(intersectingChannel+1) 
+    				|| sensor.isBadChannel(intersectingChannel-1)){
     			this.printDebug("Track intersects a bad channel!");
     			return false;
     		}
@@ -460,10 +467,6 @@
         Hep3Vector sensorPos = sensor.getGeometry().getPosition();   
         Box sensorSolid = (Box) sensor.getGeometry().getLogicalVolume().getSolid();
         Polygon3D sensorFace = sensorSolid.getFacesNormalTo(new BasicHep3Vector(0, 0, 1)).get(0);
-        if(debug){
-        	System.out.println(this.getClass().getSimpleName() + ": Sensor: " + SvtUtils.getInstance().getDescription(sensor));
-        	System.out.println(this.getClass().getSimpleName() + ": Track Position: " + trackPosition.toString());
-        }
         
         List<Point3D> vertices = new ArrayList<Point3D>();
         for(int index = 0; index < 4; index++){

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/SvtPerformance.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/SvtPerformance.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/SvtPerformance.java	Mon Nov  3 02:54:53 2014
@@ -11,10 +11,6 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
-import org.hps.recon.tracking.ShapeFitParameters;
-import org.hps.recon.tracking.ShaperAnalyticFitAlgorithm;
 import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
@@ -26,11 +22,13 @@
 import org.lcsim.util.Driver;
 import org.lcsim.util.aida.AIDA;
 
+import org.hps.recon.tracking.ShapeFitParameters;
+import org.hps.recon.tracking.ShaperAnalyticFitAlgorithm;
+
 /**
  * Driver that looks at the performance of the SVT.
  *
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id:$
  */
 public class SvtPerformance extends Driver {
 
@@ -307,7 +305,6 @@
         int channel, bad_channel;
         int maxClusterChannel = 0;
         int hitsPerCluster = 0;
-        ChannelConstants constants = null;
         double clusterAmplitude, maxClusterAmplitude;
         double noise = 0;
         double trkChiSquared = 0;
@@ -358,8 +355,8 @@
                         RawTrackerHit rawHit = (RawTrackerHit) rh;
                         channel = rawHit.getIdentifierFieldValue("strip");
                         // Check if the channel neighbors a channel that has been tagged as bad
-                        if (HPSSVTCalibrationConstants.isBadChannel(sensor, channel + 1)
-                                || HPSSVTCalibrationConstants.isBadChannel(sensor, channel - 1)) {
+                        if (sensor.isBadChannel(channel + 1)
+                                || sensor.isBadChannel(channel - 1)) {
                             bad_channel = 1;
                         }
 
@@ -380,8 +377,7 @@
                             }
                         }
 
-                        constants = HPSSVTCalibrationConstants.getChannelConstants(sensor, channel);
-                        for (ShapeFitParameters fit : shaperFitter.fitShape(rawHit, constants)) {
+                        for (ShapeFitParameters fit : shaperFitter.fitShape(rawHit)) {
                             if (fit.getAmp() > maxClusterAmplitude) {
                                 maxClusterChannel = channel;
                                 maxClusterAmplitude = fit.getAmp();

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/SvtQA.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/SvtQA.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/SvtQA.java	Mon Nov  3 02:54:53 2014
@@ -1,33 +1,19 @@
 package org.hps.users.omoreno;
 
-//--- HEP ---//
 import static org.hps.conditions.deprecated.HPSSVTConstants.TOTAL_STRIPS_PER_SENSOR;
-//--- hps-java ---//
-//--- Constants ---//
 import hep.aida.IHistogram1D;
 import hep.aida.IHistogram2D;
 import hep.aida.IPlotter;
 
 import java.io.BufferedWriter;
 import java.io.FileWriter;
-//--- Java ---//
 import java.io.IOException;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
-import java.util.Set;
-
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
-import org.hps.conditions.deprecated.SvtUtils;
-import org.hps.recon.tracking.FittedRawTrackerHit;
-import org.hps.recon.tracking.ShapeFitParameters;
-import org.hps.recon.tracking.ShaperAnalyticFitAlgorithm;
-import org.hps.recon.tracking.TrackUtils;
-import org.hps.recon.tracking.apv25.SvtReadout;
-//--- lcsim ---//
-import org.lcsim.detector.tracker.silicon.SiSensor;
+
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.Track;
@@ -40,21 +26,29 @@
 import org.lcsim.util.Driver;
 import org.lcsim.util.aida.AIDA;
 
+import org.hps.recon.tracking.FittedRawTrackerHit;
+import org.hps.recon.tracking.ShapeFitParameters;
+import org.hps.recon.tracking.ShaperAnalyticFitAlgorithm;
+import org.hps.recon.tracking.TrackUtils;
+import org.hps.recon.tracking.apv25.SvtReadout;
+
+
 /**
  * SVT Quality Assurance Driver
- *
+ *  
  * @author Omar Moreno <[log in to unmask]>
- * @version $Id: SvtQA.java,v 1.7 2013/10/25 19:45:01 jeremy Exp $
  */
+// TODO: Split this driver up.
 public class SvtQA extends Driver {
 
     private AIDA aida;
     private ShaperAnalyticFitAlgorithm shaperFitter = new ShaperAnalyticFitAlgorithm();
     private List<IHistogram1D> histos1D = new ArrayList<IHistogram1D>();
     private List<IHistogram2D> histos2D = new ArrayList<IHistogram2D>();
-    private List<IPlotter> plotters = new ArrayList<IPlotter>();
+    private List<IPlotter>     plotters = new ArrayList<IPlotter>();
     private Map<String, double[]> sensorToOccupancy = new HashMap<String, double[]>();
     private Map<String, double[]> sensorToStereoOccupancy = new HashMap<String, double[]>();
+    List<HpsSiSensor> sensors = null; 
     BufferedWriter output = null;
 
     String outputFile = null;
@@ -62,7 +56,7 @@
 
     int channelNumber = 0;
     int plotterIndex = 0;
-    int apvNumber = 0;
+    int apvNumber = 0;	
     double totalNumberEvents = 0;
     double totalNumberOfRawHitEvents = 0;
     double[] totalTopSamples = new double[6];
@@ -70,7 +64,7 @@
     double[] topSamples = new double[6];
     double[] bottomSamples = new double[6];
     double totalNumberOfHits = 0;
-
+    
     double maxOccupancy = 1.0;
     double maxOccupancyVariation = 1000; // %
 
@@ -79,10 +73,10 @@
 
     // Plot flags
     boolean enableADCvsChannel = false;
-    boolean enableOccupancy = false;
+    boolean enableOccupancy    = false;
     boolean enableStereoHitOccupancy = false;
     boolean enableChannelPlots = false;
-    boolean enableAPVPlots = false;
+    boolean enableAPVPlots     = false;
     boolean enableChiSquaredvsChannel = false;
     boolean enableSamples = false;
     boolean enableT0Plots = false;
@@ -97,7 +91,7 @@
     /**
      * Default Ctor
      */
-    public SvtQA() {
+    public SvtQA(){
     }
 
     //--- Setters ---//
@@ -105,134 +99,132 @@
     /**
      * Enable/disable occupancy plots
      */
-    public void setEnableOccupancyPlots(boolean enableOccupancy) {
+    public void setEnableOccupancyPlots(boolean enableOccupancy){
         this.enableOccupancy = enableOccupancy;
     }
 
     /**
      * Enable/disable stereo hit occupancy plots
      */
-    public void setEnableStereoHitOccupancyPlots(boolean enableStereoHitOccupancy) {
+    public void setEnableStereoHitOccupancyPlots(boolean enableStereoHitOccupancy){
         this.enableStereoHitOccupancy = enableStereoHitOccupancy;
     }
 
     /**
-     * Enable/disable ADC counts vs Channel plots
-     */
-    public void setEnableADCvsChannelPlots(boolean enableADCvsChannel) {
+     * Enable/disable ADC counts vs Channel plots 
+     */
+    public void setEnableADCvsChannelPlots(boolean enableADCvsChannel){
         this.enableADCvsChannel = enableADCvsChannel;
     }
 
     /**
      * Enable/disable Channel Plots
      */
-    public void setEnableChannelPlots(boolean enableChannelPlots) {
+    public void setEnableChannelPlots(boolean enableChannelPlots){
         this.enableChannelPlots = enableChannelPlots;
     }
 
     /**
-     * Enable/disable plots associated with individual APVs
-     */
-    public void setEnableAPVPlots(boolean enableAPVPlots) {
+     * Enable/disable plots associated with individual APVs 
+     */
+    public void setEnableAPVPlots(boolean enableAPVPlots){
         this.enableAPVPlots = enableAPVPlots;
     }
 
     /**
-     * Enable/disable Chi Squared of fit to samples vs Channel plots
-     */
-    public void setEnableChiSquaredvsChannelPlots(boolean enableChiSquaredvsChannel) {
+     * Enable/disable Chi Squared of fit to samples vs Channel plots 
+     */
+    public void setEnableChiSquaredvsChannelPlots(boolean enableChiSquaredvsChannel){
         this.enableChiSquaredvsChannel = enableChiSquaredvsChannel;
     }
 
     /**
      * Enable/disable plots of the APV samples
      */
-    public void setEnableSamplesPlots(boolean enableSamples) {
+    public void setEnableSamplesPlots(boolean enableSamples){
         this.enableSamples = enableSamples;
     }
 
     /**
-     * Enable/disable t0 plots
-     */
-    public void setEnableT0Plots(boolean enableT0Plots) {
+     * Enable/disable t0 plots 
+     */
+    public void setEnableT0Plots(boolean enableT0Plots){
         this.enableT0Plots = enableT0Plots;
     }
 
     /**
-     * Set the channel number of interest
-     */
-    public void setChannelNumber(int channelNumber) {
+     * Set the channel number of interest 
+     */
+    public void setChannelNumber(int channelNumber){
         this.channelNumber = channelNumber;
     }
 
     /**
-     * Set the sensor of interest
-     */
-    public void setSensorName(String sensorName) {
+     * Set the sensor of interest 
+     */
+    public void setSensorName(String sensorName){
         this.sensorName = sensorName;
     }
 
     /**
      * Set the APV number of interest
      */
-    public void setApvNumber(int apvNumber) {
+    public void setApvNumber(int apvNumber){
         this.apvNumber = apvNumber;
     }
 
     /**
-     * Set the maximum occupancy a channel may have
-     */
-    public void setMaxOccupancy(double maxOccupancy) {
+     * Set the maximum occupancy a channel may have    
+     */
+    public void setMaxOccupancy(double maxOccupancy){
         this.maxOccupancy = maxOccupancy;
     }
 
     /**
      * Set the maximum channel to channel occupancy variation
      */
-    public void setMaxOccupancyVariation(double maxOccupancyVariation) {
+    public void setMaxOccupancyVariation(double maxOccupancyVariation){
         this.maxOccupancyVariation = maxOccupancyVariation;
     }
 
     /**
+     * 
+     */
+    public void setOutputFileName(String outputFile){
+        this.outputFile = outputFile;
+    }
+
+    /**
      *
      */
-    public void setOutputFileName(String outputFile) {
-        this.outputFile = outputFile;
+    public void setVerbose(boolean verbose){
+        this.verbose = verbose;
     }
 
     /**
      *
      */
-    public void setVerbose(boolean verbose) {
-        this.verbose = verbose;
-    }
-
-    /**
-     *
-     */
-    public void setSimulation(boolean simulation) {
+    public void setSimulation(boolean simulation){
         this.simulation = simulation;
     }
-
-    /**
-     *
-     */
-    public void setEnableTotalNumberOfHitsPlots(boolean enableTotalNumberOfHitsPlots) {
-        this.enableTotalNumberOfHitsPlots = enableTotalNumberOfHitsPlots;
-    }
-
-    /**
-     *
-     */
-    private int getAPVNumber(int physicalChannel) {
-        int apv = (int) Math.floor((physicalChannel - TOTAL_STRIPS_PER_SENSOR) / -128);
-        if (apv > 4 || apv < 0) {
-            throw new RuntimeException("Invalid APV Number: " + apv);
-        }
+    
+    /**
+     * 
+     */
+    public void setEnableTotalNumberOfHitsPlots(boolean enableTotalNumberOfHitsPlots){
+    	this.enableTotalNumberOfHitsPlots = enableTotalNumberOfHitsPlots;
+    }
+
+    /**
+     * 
+     */
+    private int getAPVNumber(int physicalChannel){
+        int apv = (int) Math.floor((physicalChannel - TOTAL_STRIPS_PER_SENSOR)/-128);
+        if(apv > 4 || apv < 0) throw new RuntimeException("Invalid APV Number: " + apv );
         return apv;
-    }
-
-    protected void detectorChanged(Detector detector) {
+    }  
+
+    protected void detectorChanged(Detector detector){
         super.detectorChanged(detector);
 
         // setup AIDA
@@ -240,7 +232,7 @@
         aida.tree().cd("/");
 
         //
-        Set<SiSensor> sensors = SvtUtils.getInstance().getSensors();
+        sensors = detector.getSubdetector("Tracker").getDetectorElement().findDescendants(HpsSiSensor.class); 
         int plotterIndex = 0;
         IHistogram1D histo1D = null;
         IHistogram2D histo2D = null;
@@ -248,11 +240,11 @@
 
         //--- Occupancy ---//
         //-----------------//
-        if (enableOccupancy) {
+        if(enableOccupancy){
             plotters.add(PlotUtils.setupPlotter("Occupancy", 5, 4));
-            for (SiSensor sensor : sensors) {
-                sensorToOccupancy.put(SvtUtils.getInstance().getDescription(sensor), new double[640]);
-                title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
+            for(HpsSiSensor sensor : sensors){
+                sensorToOccupancy.put(sensor.getName(), new double[640]);
+                title = sensor.getName() + " - Occupancy";
                 histo1D = aida.histogram1D(title, 640, 0, 639);
                 histos1D.add(histo1D);
                 PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, PlotUtils.getPlotterRegion(sensor), "Channel #", histo1D);
@@ -262,11 +254,11 @@
 
         //--- Stereo Hit Occupancy ---//
         //----------------------------//
-        if (enableStereoHitOccupancy) {
+        if(enableStereoHitOccupancy){
             plotters.add(PlotUtils.setupPlotter("Stereo Hit Occupancy", 5, 4));
-            for (SiSensor sensor : sensors) {
-                sensorToStereoOccupancy.put(SvtUtils.getInstance().getDescription(sensor), new double[640]);
-                title = SvtUtils.getInstance().getDescription(sensor) + " - Stereo Hit Occupancy";
+            for(HpsSiSensor sensor : sensors){
+                sensorToStereoOccupancy.put(sensor.getName(), new double[640]);
+                title = sensor.getName() + " - Stereo Hit Occupancy";
                 histo1D = aida.histogram1D(title, 640, 0, 639);
                 histos1D.add(histo1D);
                 PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, PlotUtils.getPlotterRegion(sensor), "Channel #", histo1D);
@@ -276,17 +268,17 @@
 
         //--- ADC Counts vs Channel ---//
         //-----------------------------//
-        if (enableADCvsChannel) {
-            if (sensorName.equals("all")) {
+        if(enableADCvsChannel){
+            if(sensorName.equals("all")){
                 plotters.add(PlotUtils.setupPlotter("ADC Counts vs Channel #", 5, 4));
-                for (SiSensor sensor : sensors) {
-                    title = SvtUtils.getInstance().getDescription(sensor) + " - ADC Counts vs Channel #";
+                for(HpsSiSensor sensor : sensors){
+                    title = sensor.getName() + " - ADC Counts vs Channel #";
                     histo2D = aida.histogram2D(title, 640, 0, 639, 300, 0, 10000);
                     histos2D.add(histo2D);
                     PlotUtils.setup2DRegion(plotters.get(plotterIndex), title, PlotUtils.getPlotterRegion(sensor), "Channel #", "ADC Counts", histo2D);
                 }
                 plotterIndex++;
-            } else if (sensorName != null) {
+            } else if(sensorName != null){
                 title = sensorName + " - ADC Counts vs Channel #";
                 plotters.add(PlotUtils.setupPlotter(title, 0, 0));
                 histo2D = aida.histogram2D(title, 640, 0, 639, 300, 0, 10000);
@@ -300,27 +292,26 @@
 
         //--- Chi Squared vs Channel ---//
         //------------------------------//
-        if (enableChiSquaredvsChannel) {
-            title = sensorName + " - Chi Squared Probability vs Channel #";
+        if(enableChiSquaredvsChannel){
+            title = sensorName + " - Chi Squared vs Channel #";
             plotters.add(PlotUtils.setupPlotter(title, 0, 0));
-            histo2D = aida.histogram2D(title, 640, 0, 639, 300, 0, 1.0);
+            histo2D = aida.histogram2D(title, 640, 0, 639, 300, 0, 100);
             histos2D.add(histo2D);
             PlotUtils.setup2DRegion(plotters.get(plotterIndex), title, 0, "Channel #", "Chi Squared", histo2D);
             plotterIndex++;
         }
 
+
         //--- Single Channel Plots ---//
         //----------------------------//
-        if (enableChannelPlots) {
-            if (sensorName == null) {
-                throw new RuntimeException("Sensor of interest is not set!");
-            }
+        if(enableChannelPlots){
+            if(sensorName == null) throw new RuntimeException("Sensor of interest is not set!");
             title = sensorName + " - Channel: " + channelNumber;
             plotters.add(PlotUtils.setupPlotter(title, 2, 2));
             title = "ADC Counts";
             histo1D = aida.histogram1D(title, 300, 4000, 7000);
             histos1D.add(histo1D);
-            PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 0, "ADC Counts", histo1D);
+            PlotUtils.setup1DRegion(plotters.get(plotterIndex),title , 0, "ADC Counts", histo1D);
             title = "Shaper Signal Amplitude";
             histo1D = aida.histogram1D(title, 300, 0, 3000);
             histos1D.add(histo1D);
@@ -334,16 +325,14 @@
 
         //--- APV Plots ---//
         //-----------------//
-        if (enableAPVPlots) {
-            if (sensorName == null) {
-                throw new RuntimeException("Sensor of interest is not set!");
-            }
+        if(enableAPVPlots){
+            if(sensorName == null) throw new RuntimeException("Sensor of interest is not set!");
             title = sensorName + " - APV " + apvNumber;
             plotters.add(PlotUtils.setupPlotter(title, 2, 2));
             title = "APV " + apvNumber + " - ADC Counts";
             histo1D = aida.histogram1D(title, 400, 0, 10000);
             histos1D.add(histo1D);
-            PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 0, "ADC Counts", histo1D);
+            PlotUtils.setup1DRegion(plotters.get(plotterIndex),title , 0, "ADC Counts", histo1D);
             title = "APV " + apvNumber + " - Shaper Signal Amplitude";
             histo1D = aida.histogram1D(title, 300, 0, 6000);
             histos1D.add(histo1D);
@@ -356,12 +345,12 @@
             histo2D = aida.histogram2D(title, 300, 0, 6000, 100, -100, 100);
             histos2D.add(histo2D);
             PlotUtils.setup2DRegion(plotters.get(plotterIndex), title, 3, "Amplitude [ADC Counts]", "t0 [ns]", histo2D);
-            plotterIndex++;
+            plotterIndex++;   
         }
 
         //--- Samples Amplitude vs Sample Number ---//
         //------------------------------------------//
-        if (enableSamples) {
+        if(enableSamples){
             title = "APV Sample Number vs Sample Amplitude";
             plotters.add(PlotUtils.setupPlotter(title, 1, 2));
             plotters.get(plotterIndex).style().zAxisStyle().setParameter("scale", "log");
@@ -378,18 +367,19 @@
 
         //--- t0 Plots ---//
         //----------------//
-        if (enableT0Plots) {
-            if (sensorName.equals("all")) {
+        if(enableT0Plots){
+            if(sensorName.equals("all")){
                 plotters.add(PlotUtils.setupPlotter("t0 Resolution vs Channel #", 5, 4));
                 plotters.get(plotterIndex).style().zAxisStyle().setParameter("scale", "log");
-                for (SiSensor sensor : sensors) {
-                    title = SvtUtils.getInstance().getDescription(sensor) + " - t0 Resolution vs Channel #";
+                for(HpsSiSensor sensor : sensors){
+                    title = sensor.getName() + " - t0 Resolution vs Channel #";
                     histo2D = aida.histogram2D(title, 640, 0, 639, 40, -20, 20);
                     histos2D.add(histo2D);
                     PlotUtils.setup2DRegion(plotters.get(plotterIndex), title, PlotUtils.getPlotterRegion(sensor), "Channel #", "t0 Resolution [ns]", histo2D);
                 }
                 plotterIndex++;
-            } else if (sensorName != null) {
+            }
+            else if(sensorName != null){
                 title = sensorName + " - Hit Time Resolution";
                 plotters.add(PlotUtils.setupPlotter(title, 0, 0));
                 plotters.get(plotterIndex).style().statisticsBoxStyle().setVisible(true);
@@ -397,36 +387,33 @@
                 histos1D.add(histo1D);
                 PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 0, "<Hit Time> - Hit Time [ns]", histo1D);
                 plotterIndex++;
-            } else {
-                throw new RuntimeException("Sensor of interest not set!");
-            }
-
-        }
-
-        if (enableTotalNumberOfHitsPlots) {
-            title = "Total Number of RawTrackerHits";
-            plotters.add(PlotUtils.setupPlotter(title, 0, 0));
-            plotters.get(plotterIndex).style().statisticsBoxStyle().setVisible(true);
-            histo1D = aida.histogram1D(title, 100, 0, 75);
-            histos1D.add(histo1D);
-            PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 0, "Number of RawTrackerHits", histo1D);
-            plotterIndex++;
-        }
-
-        for (IPlotter plotter : plotters) {
-            plotter.show();
-        }
-
-    }
-
-    /**
-     *
-     */
-    public int findPeakSamples(short[] samples) {
+            }
+            else throw new RuntimeException("Sensor of interest not set!");
+
+        }
+        
+        if(enableTotalNumberOfHitsPlots){
+        	title = "Total Number of RawTrackerHits";
+        	plotters.add(PlotUtils.setupPlotter(title, 0, 0));
+        	plotters.get(plotterIndex).style().statisticsBoxStyle().setVisible(true);
+        	histo1D = aida.histogram1D(title, 100, 0, 75);
+        	histos1D.add(histo1D);
+        	PlotUtils.setup1DRegion(plotters.get(plotterIndex), title, 0, "Number of RawTrackerHits", histo1D);
+        	plotterIndex++;
+        }
+
+        for(IPlotter plotter : plotters) plotter.show();
+        
+    }
+
+    /**
+     * 
+     */
+    public int findPeakSamples(short[] samples){
         int maxSample = 0;
         int maxSampleIndex = 0;
-        for (int index = 0; index < samples.length; index++) {
-            if (maxSample < samples[index]) {
+        for(int index = 0; index < samples.length; index++){
+            if(maxSample < samples[index]){
                 maxSample = samples[index];
                 maxSampleIndex = index;
             }
@@ -434,33 +421,33 @@
         return maxSampleIndex;
     }
 
-    public void process(EventHeader event) {
+
+
+    public void process(EventHeader event){
 
         totalNumberEvents++;
         String title;
 
         // If the event doesn't contain RawTrackerHits then skip it
-        if (!event.hasCollection(RawTrackerHit.class, rawHitCollectionName)) {
-            if (verbose) {
-                System.out.println("Event doesn't contain RawTrackerHits! Skipping event ...");
-            }
+        if(!event.hasCollection(RawTrackerHit.class, rawHitCollectionName )){
+            if(verbose) System.out.println("Event doesn't contain RawTrackerHits! Skipping event ...");
             return;
         }
 
         // Get the RawTrackerHits from the event
         List<RawTrackerHit> rawHits = event.get(RawTrackerHit.class, rawHitCollectionName);
-
+        
         // Get the total number of RawTrackerHits in the event
-        if (enableTotalNumberOfHitsPlots && rawHits.size() != 0) {
+        if(enableTotalNumberOfHitsPlots && rawHits.size() != 0){
             aida.histogram1D("Total Number of RawTrackerHits").fill(rawHits.size());
         }
 
-        SiSensor sensor = null;
-        ChannelConstants constants = null;
-        for (RawTrackerHit rawHit : rawHits) {
+        HpsSiSensor sensor = null;
+        ShapeFitParameters fit = null;
+        for(RawTrackerHit rawHit : rawHits){
 
             // Get the sensor on which this hit occurred
-            sensor = (SiSensor) rawHit.getDetectorElement();
+            sensor = (HpsSiSensor) rawHit.getDetectorElement();
 
             // Get the shaper signal samples
             short[] samples = rawHit.getADCValues();
@@ -472,151 +459,147 @@
             int apv = this.getAPVNumber(channel);
 
             // Get the constants associated with this channel
-            constants = HPSSVTCalibrationConstants.getChannelConstants(sensor, channel);
+            //constants = HPSSVTCalibrationConstants.getChannelConstants(sensor, channel);
 
             // Fit the samples associated with the RawTrackerHit
-            for (ShapeFitParameters fit : shaperFitter.fitShape(rawHit, constants)) {
-
-                // Fill the occupancy plots
-                if (enableOccupancy) {
-                    title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
-                    aida.histogram1D(title).fill(channel, 1);
-                }
-
-                // Fill ADC vs Channel # plots
-                if (enableADCvsChannel && sensorName.equals("all")) {
-                    title = SvtUtils.getInstance().getDescription(sensor) + " - ADC Counts vs Channel #";
-                    for (short sample : samples) {
-                        aida.histogram2D(title).fill(channel, sample);
-                    }
-                } else if (enableADCvsChannel && SvtUtils.getInstance().getDescription(sensor).equals(sensorName)) {
-                    title = sensorName + " - ADC Counts vs Channel #";
-                    for (short sample : samples) {
-                        aida.histogram2D(title).fill(channel, sample);
-                    }
-                }
-
-                // 
-                if (enableChannelPlots && SvtUtils.getInstance().getDescription(sensor).equals(sensorName) && channel == channelNumber) {
-                    title = "ADC Counts";
-                    for (short sample : samples) {
-                        aida.histogram1D(title).fill(sample);
-                    }
-                    title = "Shaper Signal Amplitude";
-                    aida.histogram1D(title).fill(fit.getAmp());
-                    System.out.println("Amplitude: " + fit.getAmp());
-                    title = "t0";
-                    aida.histogram1D(title).fill(fit.getT0());
-                    System.out.println("t0 " + fit.getT0());
-                }
-
-                if (enableAPVPlots && SvtUtils.getInstance().getDescription(sensor).equals(sensorName) && apv == apvNumber) {
-                    title = "APV " + apvNumber + " - ADC Counts";
-                    for (short sample : samples) {
-                        aida.histogram1D(title).fill(sample);
-                    }
-                    title = "APV " + apvNumber + " - Shaper Signal Amplitude";
-                    aida.histogram1D(title).fill(fit.getAmp());
-                    title = "APV " + apvNumber + " - t0";
-                    aida.histogram1D(title).fill(fit.getT0());
-                    title = "APV " + apvNumber + " - Amplitude vs t0";
-                    aida.histogram2D(title).fill(fit.getAmp(), fit.getT0());
-                }
+            //fit = shaperFitter.fitShape(rawHit);
+
+            // Fill the occupancy plots
+            if(enableOccupancy){
+                title = sensor.getName() + " - Occupancy";
+                aida.histogram1D(title).fill(channel, 1);
+            }
+
+            // Fill ADC vs Channel # plots
+            if(enableADCvsChannel && sensorName.equals("all")){
+                title = sensor.getName() + " - ADC Counts vs Channel #";
+                for(short sample : samples){
+                    aida.histogram2D(title).fill(channel, sample);
+                }
+            } else if(enableADCvsChannel && sensor.getName().equals(sensorName)){
+                title = sensorName + " - ADC Counts vs Channel #";
+                for(short sample : samples){
+                    aida.histogram2D(title).fill(channel, sample);
+                }
+            }
+
+            // 
+            if(enableChannelPlots && sensor.getName().equals(sensorName) && channel == channelNumber){
+                title = "ADC Counts";
+                for(short sample : samples){
+                    aida.histogram1D(title).fill(sample);
+                }
+                title = "Shaper Signal Amplitude";
+                aida.histogram1D(title).fill(fit.getAmp());	    
+                System.out.println("Amplitude: " + fit.getAmp());
+                title="t0";
+                aida.histogram1D(title).fill(fit.getT0());
+                System.out.println("t0 " + fit.getT0());
+            }
+
+            if(enableAPVPlots && sensor.getName().equals(sensorName) && apv == apvNumber ){
+                title = "APV " + apvNumber + " - ADC Counts";
+                for(short sample : samples){
+                    aida.histogram1D(title).fill(sample);
+                }
+                title = "APV " + apvNumber + " - Shaper Signal Amplitude";
+                aida.histogram1D(title).fill(fit.getAmp());     
+                title = "APV " + apvNumber + " - t0";
+                aida.histogram1D(title).fill(fit.getT0());
+                title = "APV " + apvNumber + " - Amplitude vs t0";
+                aida.histogram2D(title).fill(fit.getAmp(), fit.getT0());
             }
         }
 
         /*
-         if(enableOccupancy){
-         for(SiSensor sensor : SvtUtils.getInstance().getSensors()){
-         title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
-         aida.histogram1D(title).reset();
-         int nEvents = simulation ? SvtReadout.getNumberOfTriggers()  : totalNumberEvents; 
-         for(int index = 0; index < 640; index++){
-         aida.histogram1D(title).fill(index, sensorToOccupancy.get(SvtUtils.getInstance().getDescription(sensor))[index]/nEvents);
-         }
-         }
-         }*/
+        if(enableOccupancy){
+            for(HpsSiSensor sensor : sensors){
+                title = sensor.getName() + " - Occupancy";
+                aida.histogram1D(title).reset();
+                int nEvents = simulation ? SvtReadout.getNumberOfTriggers()  : totalNumberEvents; 
+                for(int index = 0; index < 640; index++){
+                    aida.histogram1D(title).fill(index, sensorToOccupancy.get(sensor.getName())[index]/nEvents);
+                }
+            }
+        }*/
+
         // If the event doesn't contain FittedRawTrackerHits then skip it
-        if (!event.hasCollection(FittedRawTrackerHit.class, fittedHitCollectionName)) {
-            if (verbose) {
-                System.out.println("Event doesn't contain FittedRawTrackerHits! Skipping event ...");
-            }
+        if(!event.hasCollection(FittedRawTrackerHit.class, fittedHitCollectionName)){
+            if(verbose) System.out.println("Event doesn't contain FittedRawTrackerHits! Skipping event ...");
             return;
         }
 
         // Get the RawTrackerHits from the event
         List<FittedRawTrackerHit> fittedHits = event.get(FittedRawTrackerHit.class, fittedHitCollectionName);
-
+        
         //System.out.println(this.getClass().getSimpleName() + ": Number of FittedRawTrackerHits " + fittedHits.size());
-        for (FittedRawTrackerHit fittedHit : fittedHits) {
+
+        for(FittedRawTrackerHit fittedHit : fittedHits){
+
 
             // Get the channel number
             int channel = fittedHit.getRawTrackerHit().getIdentifierFieldValue("strip");
 
             // Get the sensor number 
-            sensor = (SiSensor) fittedHit.getRawTrackerHit().getDetectorElement();
+            sensor = (HpsSiSensor) fittedHit.getRawTrackerHit().getDetectorElement();
 
             // Fill Chi Squared vs Channel # plots
-            if (enableChiSquaredvsChannel && SvtUtils.getInstance().getDescription(sensor).equals(sensorName)) {
-                title = sensorName + " - Chi Squared Probability vs Channel #";
-                aida.histogram2D(title).fill(channel, fittedHit.getShapeFitParameters().getChiProb());
+            if(enableChiSquaredvsChannel && sensor.getName().equals(sensorName)){
+                title = sensorName + " - Chi Squared vs Channel #";
+                //aida.histogram2D(title).fill(channel, fittedHit.getShapeFitParameters().getChiSq());
             }
         }
 
         // If the event does not contain stereo hits, skip the event
-        if (!event.hasCollection(HelicalTrackHit.class, stereoHitCollectionName)) {
-            if (verbose) {
-                System.out.println("Event doesn't contain HelicalTrackHits! Skipping event ...");
-            }
+        if(!event.hasCollection(HelicalTrackHit.class, stereoHitCollectionName)){
+            if(verbose) System.out.println("Event doesn't contain HelicalTrackHits! Skipping event ...");
             return;
         }
 
         // Get the list of HelicalTrackHits
-        List<HelicalTrackHit> stereoHits = event.get(HelicalTrackHit.class, stereoHitCollectionName);
-
-        for (HelicalTrackHit stereoHit : stereoHits) {
+        List<HelicalTrackHit> stereoHits =event.get(HelicalTrackHit.class, stereoHitCollectionName); 
+
+        for(HelicalTrackHit stereoHit : stereoHits){
 
             double totalT0 = 0;
 
-            for (Object hit : stereoHit.getRawHits()) {
+            for(Object hit : stereoHit.getRawHits()){
 
                 RawTrackerHit rawHit = (RawTrackerHit) hit;
 
-                sensor = (SiSensor) rawHit.getDetectorElement();
+                sensor = (HpsSiSensor) rawHit.getDetectorElement();
 
                 // Get the channel number
                 int channel = rawHit.getIdentifierFieldValue("strip");
 
                 // Get the constants associated with this channel
-                constants = HPSSVTCalibrationConstants.getChannelConstants(sensor, channel);
+                //constants = HPSSVTCalibrationConstants.getChannelConstants(sensor, channel);
 
                 // Fit the samples associated with the RawTrackerHit
-                for (ShapeFitParameters fit : shaperFitter.fitShape(rawHit, constants)) {
-
-                    // Get the shaper signal samples
-                    short[] samples = rawHit.getADCValues();
-
-                    if (enableStereoHitOccupancy) {
-                        title = SvtUtils.getInstance().getDescription(sensor) + " - Stereo Hit Occupancy";
-                        sensorToStereoOccupancy.get(SvtUtils.getInstance().getDescription(sensor))[channel] += 1;
-                    }
-
-                    // Fill Sample Plots
-                    if (enableSamples) {
-                        if (fit.getAmp() > 2000 && fit.getAmp() < 6000) {
-                            for (int sampleN = 1; sampleN <= samples.length; sampleN++) {
-                                if ((sampleN == 1 && totalNumberEvents % 5 != 0) || (sampleN == 2 && totalNumberEvents % 5 != 0)/* || (sampleN == 3 && totalNumberEvents%3 != 0) */) {
-                                    continue;
-                                }
-                                if (SvtUtils.getInstance().isTopLayer(sensor)) {
-                                    aida.histogram2D("APV Sample Number vs Sample Amplitude - Top").fill(sampleN, samples[sampleN - 1] - constants.getPedestal());
-                                    totalTopSamples[sampleN - 1]++;
-                                    topSamples[sampleN - 1] += samples[sampleN - 1] - constants.getPedestal();
-                                } else {
-                                    aida.histogram2D("APV Sample Number vs Sample Amplitude - Bottom").fill(sampleN, samples[sampleN - 1] - constants.getPedestal());
-                                    totalBottomSamples[sampleN - 1]++;
-                                    bottomSamples[sampleN - 1] += samples[sampleN - 1] - constants.getPedestal();
-                                }
+                //fit = shaperFitter.fitShape(rawHit);
+
+                // Get the shaper signal samples
+                short[] samples = rawHit.getADCValues();
+
+                if(enableStereoHitOccupancy){
+                    title = sensor.getName() + " - Stereo Hit Occupancy";
+                    sensorToStereoOccupancy.get(sensor.getName())[channel] += 1;
+                }
+
+                // Fill Sample Plots
+                if(enableSamples){
+                    if(fit.getAmp() > 2000 && fit.getAmp() < 6000){
+                        for(int sampleN = 1; sampleN <= samples.length; sampleN++){
+                            if((sampleN == 1 && totalNumberEvents%5 != 0) || (sampleN == 2 && totalNumberEvents%5 != 0)/* || (sampleN == 3 && totalNumberEvents%3 != 0) */) continue;
+                            if(sensor.isTopLayer()){
+                                aida.histogram2D("APV Sample Number vs Sample Amplitude - Top").fill(sampleN, samples[sampleN-1] - sensor.getPedestal(channel, sampleN-1));
+                                totalTopSamples[sampleN-1]++;
+                                topSamples[sampleN-1] += samples[sampleN-1] - sensor.getPedestal(channel, sampleN-1);
+                            }
+                            else{
+                            	aida.histogram2D("APV Sample Number vs Sample Amplitude - Bottom").fill(sampleN, samples[sampleN-1] - sensor.getPedestal(channel, sampleN-1));
+                            	totalBottomSamples[sampleN-1]++;
+                            	bottomSamples[sampleN-1] += samples[sampleN - 1] - sensor.getPedestal(channel, sampleN-1);
                             }
                         }
                     }
@@ -625,67 +608,66 @@
         }
 
         /*
-         if(enableStereoHitOccupancy){
-         for(SiSensor sensor : SvtUtils.getInstance().getSensors()){
-         title = SvtUtils.getInstance().getDescription(sensor) + " - Stereo Hit Occupancy";
-         aida.histogram1D(title).reset();
-         for(int index = 0; index < 640; index++){
-         aida.histogram1D(title).fill(index, sensorToStereoOccupancy.get(SvtUtils.getInstance().getDescription(sensor))[index]/event.getEventNumber());
-         }
-         }
-         }*/
-        if (!event.hasCollection(Track.class, trackCollectionName)) {
-            return;
-        }
-
+        if(enableStereoHitOccupancy){
+            for(HpsSiSensor sensor : sensors){
+                title = sensor.getName() + " - Stereo Hit Occupancy";
+                aida.histogram1D(title).reset();
+                for(int index = 0; index < 640; index++){
+                    aida.histogram1D(title).fill(index, sensorToStereoOccupancy.get(sensor.getName())[index]/event.getEventNumber());
+                }
+            }
+        }*/
+        if(!event.hasCollection(Track.class, trackCollectionName)) return;
+        
         // Get the list of tracks in the event
         List<SeedTrack> tracks = event.get(SeedTrack.class, trackCollectionName);
 
-        if (enableT0Plots) {
+        if(enableT0Plots){
 
             // Loop over all tracks in the event
-            for (Track track : tracks) {
+            for(Track track : tracks){
+
 
                 double totalT0 = 0;
                 double totalHits = 0;
 
                 // Loop over all stereo hits comprising a track
-                for (TrackerHit crossHit : track.getTrackerHits()) {
+                for(TrackerHit crossHit : track.getTrackerHits()){
 
                     HelicalTrackCross htc = (HelicalTrackCross) crossHit;
 
-                    for (HelicalTrackStrip hts : htc.getStrips()) {
+                    for(HelicalTrackStrip hts : htc.getStrips()){
 
                         totalT0 += hts.time();
                         totalHits++;
                     }
                 }
 
-                double meanT0 = totalT0 / totalHits;
-
-                for (TrackerHit crossHit : track.getTrackerHits()) {
+                double meanT0 = totalT0/totalHits;
+
+                for(TrackerHit crossHit : track.getTrackerHits()){
 
                     HelicalTrackCross htc = (HelicalTrackCross) crossHit;
 
-                    for (HelicalTrackStrip hts : htc.getStrips()) {
-
-                        //SiSensor sensor = null;
-                        if (TrackUtils.getZ0(track) > 0) {
-                            sensor = SvtUtils.getInstance().getSensor(0, hts.layer() - 1);
-                        } else if (TrackUtils.getZ0(track) < 0) {
-                            sensor = SvtUtils.getInstance().getSensor(1, hts.layer() - 1);
+                    for(HelicalTrackStrip hts : htc.getStrips()){
+
+                        //HpsSiSensor sensor = null;
+                        if(TrackUtils.getZ0(track) > 0){
+                            //sensor = SvtUtils.getInstance().getSensor(0, hts.layer() - 1);
+                        } else if(TrackUtils.getZ0(track) < 0){
+                            //sensor = SvtUtils.getInstance().getSensor(1, hts.layer() - 1);
                         }
 
                         int channel = ((RawTrackerHit) hts.rawhits().get(0)).getIdentifierFieldValue("strip");
-
-                        if (sensorName.equals("all")) {
-                            aida.histogram2D(SvtUtils.getInstance().getDescription(sensor) + " - t0 Resolution vs Channel #").fill(channel, meanT0 - hts.time());
+                        
+                        if(sensorName.equals("all")){
+                        	aida.histogram2D(sensor.getName() + " - t0 Resolution vs Channel #").fill(channel, meanT0 - hts.time());
                         } else {
-                            if (SvtUtils.getInstance().getDescription(sensor).equals(sensorName)) {
-                                aida.histogram1D(sensorName + " - Hit Time Resolution").fill(meanT0 - hts.time());
-                            }
-
+                        if(sensor.getName().equals(sensorName)){
+                            aida.histogram1D(sensorName + " - Hit Time Resolution").fill(meanT0 - hts.time());
                         }
+                        
+                        } 
                     }
                 }
             }
@@ -694,175 +676,164 @@
     }
 
     @Override
-    public void endOfData() {
-        String title;
-
-        String plotName;
-        if (enableOccupancy) {
-            for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
-                title = SvtUtils.getInstance().getDescription(sensor) + " - Occupancy";
-                // Scale the hits per channel by the number of events
-                aida.histogram1D(title).scale(1 / totalNumberEvents);
-
-                // Write the occupancies to a file
-                if (SvtUtils.getInstance().isTopLayer(sensor)) {
-                    plotName = outputFile + "_top_";
-                } else {
-                    plotName = outputFile + "_bottom_";
-                }
-
-                if (SvtUtils.getInstance().getLayerNumber(sensor) < 10) {
-                    plotName += "0" + SvtUtils.getInstance().getLayerNumber(sensor) + ".dat";
-                } else {
-                    plotName += SvtUtils.getInstance().getLayerNumber(sensor) + ".dat";
-                }
-
-                // Open the output files stream
-                if (plotName != null) {
-                    try {
-                        output = new BufferedWriter(new FileWriter(plotName));
-                        for (int channel = 0; channel < 640; channel++) {
-                            output.write(channel + " " + aida.histogram1D(title).binHeight(channel) + "\n");
-                        }
-                        output.close();
-                    } catch (Exception e) {
-                        System.out.println(this.getClass().getSimpleName() + " :Error! " + e.getMessage());
+        public void endOfData(){
+    		String title;
+    		
+
+    		
+            String plotName;
+    		if(enableOccupancy){
+    			for(HpsSiSensor sensor : sensors){
+    				title = sensor.getName() + " - Occupancy";
+    				// Scale the hits per channel by the number of events
+    				aida.histogram1D(title).scale(1/totalNumberEvents);
+    				
+    				// Write the occupancies to a file
+    				if(sensor.isTopLayer()){
+    					plotName = outputFile + "_top_";
+    				} else { 
+    					plotName = outputFile + "_bottom_";
+    				}
+    				
+					if(sensor.getLayerNumber() < 10){
+						plotName += "0" + sensor.getLayerNumber() + ".dat";
+					} else {
+						plotName += sensor.getLayerNumber() + ".dat";
+					}
+    			
+	    			// Open the output files stream
+	                if(plotName != null){
+	                	try{
+	                		output = new BufferedWriter(new FileWriter(plotName)); 
+                			for(int channel = 0; channel < 640; channel++){
+                				output.write(channel + " " + aida.histogram1D(title).binHeight(channel) + "\n");
+                			}
+                			output.close();
+	                	} catch(Exception e) {
+	                		System.out.println(this.getClass().getSimpleName() + " :Error! " + e.getMessage());
+	                	}
+	                }
+    			}
+    		}
+    		
+    		if(enableT0Plots){
+    			int bins = aida.histogram1D(sensorName + " - Hit Time Resolution").axis().bins();
+    			for(int bin = 0; bin < bins; bin++){
+    				System.out.println(bin + "        " + aida.histogram1D(sensorName + " - Hit Time Resolution").binHeight(bin));
+    			}
+    		}
+    	
+            	
+            	/*
+                for(HpsSiSensor sensor : sensors){
+                    	if(outputFile != null && sensorName.equals(sensor.getName())){
+                    		try{
+                    			for(int channel = 0; channel < 639; channel++){
+    								output.write(channel + " " + this.getOccupancy(sensor, channel) + "\n");
+    							}
+                    			output.close();
+                    		} catch(IOException e){
+                    			System.out.println(this.getClass().getSimpleName() + ": Error! " + e.getMessage());
+                    		}
+                    	}
+                	
+                	System.out.println("%===================================================================%");
+                    System.out.println(sensor.getName() + " Bad Channels");
+                    System.out.println("%===================================================================%");
+                    for(int index = 0; index < 640; index++){
+
+                        // Check is the channel can be considered bad    
+                        this.checkChannel(sensor, index);
                     }
                 }
-            }
-        }
-
-        if (enableT0Plots) {
-            int bins = aida.histogram1D(sensorName + " - Hit Time Resolution").axis().bins();
-            for (int bin = 0; bin < bins; bin++) {
-                System.out.println(bin + "        " + aida.histogram1D(sensorName + " - Hit Time Resolution").binHeight(bin));
-            }
-        }
-
-        System.out.println("Total Bad Channels: " + HPSSVTCalibrationConstants.getTotalBadChannels() + "\n");
-
-        /*
-         for(SiSensor sensor : SvtUtils.getInstance().getSensors()){
-         if(outputFile != null && sensorName.equals(SvtUtils.getInstance().getDescription(sensor))){
-         try{
-         for(int channel = 0; channel < 639; channel++){
-         output.write(channel + " " + this.getOccupancy(sensor, channel) + "\n");
-         }
-         output.close();
-         } catch(IOException e){
-         System.out.println(this.getClass().getSimpleName() + ": Error! " + e.getMessage());
-         }
-         }
-                	
-         System.out.println("%===================================================================%");
-         System.out.println(SvtUtils.getInstance().getDescription(sensor) + " Bad Channels");
-         System.out.println("%===================================================================%");
-         for(int index = 0; index < 640; index++){
-
-         // Check is the channel can be considered bad    
-         this.checkChannel(sensor, index);
-         }
-         }
-         System.out.println("%===================================================================% \n");
-         }*/
-        if (enableStereoHitOccupancy) {
-            for (SiSensor sensor : SvtUtils.getInstance().getSensors()) {
                 System.out.println("%===================================================================% \n");
-                System.out.println(SvtUtils.getInstance().getDescription(sensor) + " Bad Channels");
+            }*/
+
+            if(enableStereoHitOccupancy){
+                for(HpsSiSensor sensor : sensors){
+                    System.out.println("%===================================================================% \n");
+                    System.out.println(sensor.getName() + " Bad Channels");
+                    System.out.println("%===================================================================% \n");
+                    for(int index = 0; index < 640; index++){
+                        // Check is the channel can be considered bad    
+                        this.checkChannel(sensor, index);
+                    }
+                    System.out.println("%===================================================================% \n");
+                }
+            }
+
+            if(outputFile != null){
+                try{
+                    aida.saveAs(outputFile);
+                } catch(IOException exeption){
+                    System.out.println("File " + outputFile + " was not found!");
+                }
+            }
+            
+            if(enableSamples){
+            	double sigma = 0;
+            	double[] topMean = new double[6];
+            	double[] bottomMean = new double[6];
+            	
                 System.out.println("%===================================================================% \n");
-                for (int index = 0; index < 640; index++) {
-                    // Check is the channel can be considered bad    
-                    this.checkChannel(sensor, index);
-                }
-                System.out.println("%===================================================================% \n");
-            }
-        }
-
-        if (outputFile != null) {
-            try {
-                aida.saveAs(outputFile);
-            } catch (IOException exeption) {
-                System.out.println("File " + outputFile + " was not found!");
-            }
-        }
-
-        if (enableSamples) {
-            double sigma = 0;
-            double[] topMean = new double[6];
-            double[] bottomMean = new double[6];
-
-            System.out.println("%===================================================================% \n");
-            for (int index = 0; index < topSamples.length; index++) {
-                topMean[index] = topSamples[index] / totalTopSamples[index];
-                System.out.println("Top sample " + index + " mean: " + topMean[index]);
-            }
-
-            System.out.println("\n%===================================================================% \n");
-            for (int index = 0; index < bottomSamples.length; index++) {
-                bottomMean[index] = bottomSamples[index] / totalBottomSamples[index];
-                System.out.println("Bottom sample " + index + " mean: " + bottomMean[index]);
-            }
-            System.out.println("\n%===================================================================% \n");
-        }
-    }
-
-    public double getOccupancy(SiSensor sensor, int channel) {
-        if (!enableOccupancy) {
-            throw new RuntimeException("Occupancy calculation was not enabled!");
-        }
-        double nEvents = simulation ? SvtReadout.getNumberOfTriggers() : totalNumberEvents;
-        return sensorToOccupancy.get(SvtUtils.getInstance().getDescription(sensor))[channel] / nEvents;
-    }
-
-    public void checkChannel(SiSensor sensor, int channel) {
-        if (!enableOccupancy) {
-            throw new RuntimeException("Occupancy calculation was not enabled!");
-        }
-
-        if (HPSSVTCalibrationConstants.isBadChannel(sensor, channel)) {
-            return;
-        }
+            	for(int index = 0; index < topSamples.length; index++){
+            		topMean[index] = topSamples[index]/totalTopSamples[index];
+            		System.out.println("Top sample " + index + " mean: " + topMean[index]);
+            	}
+            	
+                System.out.println("\n%===================================================================% \n");
+            	for(int index = 0; index < bottomSamples.length; index++){
+            		bottomMean[index] = bottomSamples[index]/totalBottomSamples[index];
+            		System.out.println("Bottom sample " + index + " mean: " + bottomMean[index]);
+            	}
+                System.out.println("\n%===================================================================% \n");
+            }
+        }
+
+    public double getOccupancy(HpsSiSensor sensor, int channel){
+        if(!enableOccupancy) throw new RuntimeException("Occupancy calculation was not enabled!"); 
+        double nEvents = simulation ? SvtReadout.getNumberOfTriggers()  : totalNumberEvents; 
+        return sensorToOccupancy.get(sensor.getName())[channel]/nEvents;
+    }
+
+    public void checkChannel(HpsSiSensor sensor, int channel){
+        if(!enableOccupancy) throw new RuntimeException("Occupancy calculation was not enabled!");
+
+        if(sensor.isBadChannel(channel)) return;
 
         // Find the occupancy of the current channel
         double currentChannelOccu = this.getOccupancy(sensor, channel);
 
         // If the channel exceeds the maximum allowable occupancy, then it's a bad channel
-        if (currentChannelOccu > maxOccupancy) {
+        if(currentChannelOccu > maxOccupancy){
             System.out.println("Channel " + channel + ": Occupancy " + currentChannelOccu + " -- Exceeds maximum");
             return;
         }
 
         // Find the occupancy of the neighboring channels
-        if (channel == 0) {
-            double rNeighborOccu = this.getOccupancy(sensor, channel + 1);
-            if (rNeighborOccu == 0 || HPSSVTCalibrationConstants.isBadChannel(sensor, channel + 1)) {
-                return;
-            }
-            double rOccuDiff = Math.abs(rNeighborOccu - currentChannelOccu) / rNeighborOccu;
-            if (rOccuDiff >= maxOccupancyVariation) {
+        if(channel == 0){
+            double rNeighborOccu = this.getOccupancy(sensor, channel+1);
+            if(rNeighborOccu == 0 || sensor.isBadChannel(channel+1)) return; 
+            double rOccuDiff = Math.abs(rNeighborOccu - currentChannelOccu)/rNeighborOccu;
+            if(rOccuDiff >= maxOccupancyVariation)
                 System.out.println("Channel " + channel + ": Channel Variation exceeds maximum -- RVar: " + rOccuDiff);
-            }
-        } else if (channel == 638) {
-            double lNeighborOccu = this.getOccupancy(sensor, channel - 1);
-            if (lNeighborOccu == 0 || HPSSVTCalibrationConstants.isBadChannel(sensor, channel - 1)) {
-                return;
-            }
-            double lOccuDiff = Math.abs(lNeighborOccu - currentChannelOccu) / lNeighborOccu;
-            if (lOccuDiff >= maxOccupancyVariation) {
+        } else if(channel == 638){
+            double lNeighborOccu = this.getOccupancy(sensor, channel-1);
+            if(lNeighborOccu == 0 || sensor.isBadChannel(channel-1)) return;
+            double lOccuDiff = Math.abs(lNeighborOccu - currentChannelOccu)/lNeighborOccu;
+            if(lOccuDiff >= maxOccupancyVariation)
                 System.out.println("Channel " + channel + ": Channel Variation exceeds maximum -- LVar: " + lOccuDiff);
-            }
-        } else if (channel == 639) {
+        } else if (channel == 639){
             return;
-        } else {
-            double rNeighborOccu = this.getOccupancy(sensor, channel + 1);
-            double lNeighborOccu = this.getOccupancy(sensor, channel - 1);
-            if (rNeighborOccu == 0 || HPSSVTCalibrationConstants.isBadChannel(sensor, channel + 1)
-                    || lNeighborOccu == 0 || HPSSVTCalibrationConstants.isBadChannel(sensor, channel - 1)) {
-                return;
-            }
-            double rOccuDiff = Math.abs(rNeighborOccu - currentChannelOccu) / rNeighborOccu;
-            double lOccuDiff = Math.abs(lNeighborOccu - currentChannelOccu) / lNeighborOccu;
-            if (rOccuDiff >= maxOccupancyVariation && lOccuDiff >= maxOccupancyVariation) {
+        }
+        else { 
+            double rNeighborOccu = this.getOccupancy(sensor, channel+1);  
+            double lNeighborOccu = this.getOccupancy(sensor, channel-1);
+            if(rNeighborOccu == 0 || sensor.isBadChannel(channel+1)
+                    || lNeighborOccu == 0 || sensor.isBadChannel(channel-1)) return;
+            double rOccuDiff = Math.abs(rNeighborOccu - currentChannelOccu)/rNeighborOccu;
+            double lOccuDiff = Math.abs(lNeighborOccu - currentChannelOccu)/lNeighborOccu;
+            if(rOccuDiff >= maxOccupancyVariation && lOccuDiff >= maxOccupancyVariation){
                 System.out.println("Channel " + channel + ": Channel Variation exceeds maximum -- LVar: " + lOccuDiff + " RVar: " + rOccuDiff);
             }
         }

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/SvtTrackRecoEfficiency.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/SvtTrackRecoEfficiency.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/SvtTrackRecoEfficiency.java	Mon Nov  3 02:54:53 2014
@@ -1,12 +1,9 @@
 package org.hps.users.omoreno;
 
-//--- java ---//
-//--- aida ---//
 import hep.aida.IHistogram1D;
 import hep.aida.IHistogram2D;
 import hep.aida.IPlotter;
 import hep.physics.vec.BasicHep3Vector;
-//--- hep ---//
 import hep.physics.vec.Hep3Vector;
 import hep.physics.vec.VecOp;
 
@@ -20,10 +17,8 @@
 import java.util.Map;
 import java.util.Set;
 
-import org.hps.analysis.examples.TrackAnalysis;
-import org.hps.conditions.deprecated.SvtUtils;
-import org.hps.recon.tracking.FindableTrack;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.MCParticle;
 import org.lcsim.event.RawTrackerHit;
@@ -38,10 +33,11 @@
 import org.lcsim.recon.tracking.digitization.sisim.SiTrackerHit;
 import org.lcsim.recon.tracking.seedtracker.SeedStrategy;
 import org.lcsim.recon.tracking.seedtracker.StrategyXMLUtils;
-//--- lcsim ---//
 import org.lcsim.util.Driver;
 import org.lcsim.util.aida.AIDA;
-//--- hps-java ---//
+
+import org.hps.analysis.examples.TrackAnalysis;
+import org.hps.recon.tracking.FindableTrack;
 
 /**
  * 
@@ -56,6 +52,7 @@
     private List<IHistogram2D> histo2D  = new ArrayList<IHistogram2D>();
     private Map<Integer, List<SimTrackerHit>> topSimTrackerHitsList = new HashMap<Integer, List<SimTrackerHit>>();
     private Map<Integer, List<SimTrackerHit>> bottomSimTrackerHitsList = new HashMap<Integer, List<SimTrackerHit>>();
+    private List<HpsSiSensor> sensors = null;
 
     FindableTrack findable = null;
     TrackAnalysis trkAnalysis = null;
@@ -138,6 +135,8 @@
     protected void detectorChanged(Detector detector){
     	super.detectorChanged(detector);
     	
+    	sensors = detector.getSubdetector("Tracker").getDetectorElement().findDescendants(HpsSiSensor.class);
+    	
         // setup AIDA
         aida = AIDA.defaultInstance();
         aida.tree().cd("/");
@@ -154,7 +153,7 @@
         
         // Get the total number of SVT layers
         // TODO: Get the total number of Si planes from the SVT geometry 
-        totalSvtLayers = SvtUtils.getInstance().getSensors().size()/2; 
+        totalSvtLayers = sensors.size()/2; 
         System.out.println("The SVT has a total of " + totalSvtLayers + " layers");
         
         
@@ -215,20 +214,20 @@
         List<RawTrackerHit> rawHits = event.get(RawTrackerHit.class, rawTrackerHitCollectionName);
         String volume; 
         for(RawTrackerHit rawHit : rawHits){
-        	if(SvtUtils.getInstance().isTopLayer((SiSensor)rawHit.getDetectorElement())){
+        	HpsSiSensor sensor = (HpsSiSensor) rawHit.getDetectorElement();
+        	if(sensor.isTopLayer()){
         		volume = "Top Volume ";
         	} else { 
         		volume = "Bottom Volume ";
         	}
     		this.printDebug(volume + "RawTrackerHit Channel #: " + rawHit.getIdentifierFieldValue("strip") + " Layer Number: " + rawHit.getLayerNumber()
     				+ " Samples: " + samplesToString(rawHit.getADCValues()));
-            ((SiSensor) rawHit.getDetectorElement()).getReadout().addHit(rawHit);
+            ((HpsSiSensor) rawHit.getDetectorElement()).getReadout().addHit(rawHit);
         }
         
         if(event.hasCollection(SiTrackerHit.class, siTrackerHitCollectionName)){
         	List<SiTrackerHit> hitlist = event.get(SiTrackerHit.class, siTrackerHitCollectionName);
         	for(SiTrackerHit siTrackerHit : hitlist){
-        		this.printDebug("Cluster layer: " + SvtUtils.getInstance().getLayerNumber(siTrackerHit.getSensor()));
     			this.printDebug("Cluster is comprised by the following raw hits:");
         		for(RawTrackerHit rawHit : siTrackerHit.getRawHits()){
             		this.printDebug("RawTrackerHit Channel #: " + rawHit.getIdentifierFieldValue("strip") + " Layer Number: " + rawHit.getLayerNumber());
@@ -314,9 +313,9 @@
                 boolean[] planesHit = new boolean[totalSvtLayers];
                 
                 // Clear the sensor readout's and then add the SimTrackerHits from  the MC particles to them
-                for(SiSensor sensor : SvtUtils.getInstance().getSensors()) sensor.getReadout().clear();
+                for(HpsSiSensor sensor : sensors) sensor.getReadout().clear();
                 for(SimTrackerHit simHitTrackerHit : simHits){
-                    ((SiSensor) simHitTrackerHit.getDetectorElement()).getReadout().addHit(simHitTrackerHit);
+                    ((HpsSiSensor) simHitTrackerHit.getDetectorElement()).getReadout().addHit(simHitTrackerHit);
                 }
                 
                 // Clear all previously stored simTrackerHits
@@ -327,7 +326,8 @@
                 
                 // Determine if the MC particle passed through the top or bottom SVT volume
                 for(SimTrackerHit simHit : simHits){
-                    if(SvtUtils.getInstance().isTopLayer((SiSensor) simHit.getDetectorElement())){
+                	HpsSiSensor sensor = (HpsSiSensor) simHit.getDetectorElement();
+                    if(sensor.isTopLayer()){
                         this.printDebug("MC Particle passed through the top layer");
                         isTopTrack = true;
                         break;
@@ -376,7 +376,8 @@
     {
         int volumeIndex = 0;
         for(SimTrackerHit simTrackerHit : simTrackerHits){
-            if(SvtUtils.getInstance().isTopLayer((SiSensor) simTrackerHit.getDetectorElement())) volumeIndex++;
+        	HpsSiSensor sensor = (HpsSiSensor) simTrackerHit.getDetectorElement();
+            if(sensor.isTopLayer()) volumeIndex++;
             else volumeIndex--;
         }
         return Math.abs(volumeIndex) == simTrackerHits.size();

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/DataTrackerFakeHitDriver.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/DataTrackerFakeHitDriver.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/DataTrackerFakeHitDriver.java	Mon Nov  3 02:54:53 2014
@@ -16,7 +16,7 @@
 import java.util.List;
 import java.util.Set;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.HPSTrack;
 import org.hps.recon.tracking.TrackUtils;
 import org.hps.recon.tracking.TrackerHitUtils;
@@ -32,6 +32,7 @@
 import org.lcsim.detector.tracker.silicon.ChargeCarrier;
 import org.lcsim.detector.tracker.silicon.DopedSilicon;
 import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensorElectrodes;
 import org.lcsim.detector.tracker.silicon.SiStrips;
 import org.lcsim.detector.tracker.silicon.SiTrackerIdentifierHelper;
@@ -278,7 +279,8 @@
                     if (debug) {
                         System.out.println(this.getClass().getSimpleName() + ": make a tracker hit and add to this sensor");
                     }
-                    if (SvtUtils.getInstance().isTopLayer(sensor)) {
+                    //===> if (SvtUtils.getInstance().isTopLayer(sensor)) {
+                    if (((HpsSiSensor) sensor).isTopLayer()) {
                         n_hits_top++;
                         isTopTrack = true;
                     } else {

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/ModuleMPAlignmentInput.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/ModuleMPAlignmentInput.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/ModuleMPAlignmentInput.java	Mon Nov  3 02:54:53 2014
@@ -18,9 +18,9 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.TrackUtils;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.Track;
 import org.lcsim.event.TrackerHit;
@@ -255,7 +255,9 @@
         
    
         int layer = hit.Layer();
-        int side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? 10000 : 20000;
+        HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) strip.rawhits().get(0)).getDetectorElement();
+        //===> int side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? 10000 : 20000;
+        int side = sensor.isTopLayer() ? 10000 : 20000;
 
         
         if(_DEBUG) {
@@ -380,12 +382,15 @@
    
 
      private void PrintHitResiduals(HelicalTrackHit hit) {
-         HelicalTrackStrip strip = ((HelicalTrackCross) hit).getStrips().get(0);
-         String side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "top" : "bottom";        
+        HelicalTrackStrip strip = ((HelicalTrackCross) hit).getStrips().get(0);
+        HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) strip.rawhits().get(0)).getDetectorElement();
+        //===> String side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "top" : "bottom";        
+        String side = sensor.isTopLayer() ? "top" : "bottom";        
         if (_DEBUG) {
             System.out.printf("%s: --- Alignment Results for this helical track hit ---\n",this.getClass().getSimpleName());
             
-            String sensor_type = SvtUtils.getInstance().isAxial((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "axial" : "stereo";
+            //===> String sensor_type = SvtUtils.getInstance().isAxial((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "axial" : "stereo";
+            String sensor_type = sensor.isAxial() ? "axial" : "stereo";
             System.out.printf("%s: Layer %d in %s at position %s\n",this.getClass().getSimpleName(), hit.Layer(),side, hit.getCorrectedPosition().toString());
             System.out.printf("%s: Residuals (x,y,z) : %5.5e %5.5e %5.5e\n",this.getClass().getSimpleName(), _resid[0], _resid[1], _resid[2]);
             System.out.printf("%s: Errors (x,y,z)    : %5.5e %5.5e %5.5e\n",this.getClass().getSimpleName(), _error[0], _error[1], _error[2]);

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/ROOTFlatTupleDriver.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/ROOTFlatTupleDriver.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/ROOTFlatTupleDriver.java	Mon Nov  3 02:54:53 2014
@@ -22,7 +22,7 @@
 
 import org.hps.analysis.ecal.HPSMCParticlePlotsDriver;
 import org.hps.conditions.deprecated.BeamlineConstants;
-import org.hps.conditions.deprecated.SvtUtils;
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.readout.ecal.TriggerData;
 import org.hps.recon.ecal.HPSEcalCluster;
 import org.hps.recon.tracking.EventQuality;
@@ -36,7 +36,7 @@
 import org.lcsim.detector.identifier.IExpandedIdentifier;
 import org.lcsim.detector.identifier.IIdentifierHelper;
 import org.lcsim.detector.tracker.silicon.DopedSilicon;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.GenericObject;
 import org.lcsim.event.MCParticle;
@@ -931,10 +931,12 @@
         if(this._debug) System.out.printf("%s: found %d strips in clollection, asking strips in the %s\n", this.getClass().getSimpleName(),strips.size(),(top?"top":"bottom"));
         for(SiTrackerHitStrip1D strip : strips) {
             IDetectorElement de = strip.getSensor();
-            SiSensor sensor = (SiSensor) de;
+            HpsSiSensor sensor = (HpsSiSensor) de;
             int lyr = _ID.getLayer(de);
-            if(!top && SvtUtils.getInstance().isTopLayer(sensor)) continue;
-            else if (top && !SvtUtils.getInstance().isTopLayer(sensor)) continue;
+            //===> if(!top && SvtUtils.getInstance().isTopLayer(sensor)) continue;
+            if(!top && sensor.isTopLayer()) continue;
+            //else if (top && !SvtUtils.getInstance().isTopLayer(sensor)) continue;
+            else if (top && !sensor.isTopLayer()) continue;
             if(this._debug) System.out.printf("%s: strip \"%s\" at %s is selected\n", this.getClass().getSimpleName(),_ID.getName(de),strip.getPositionAsVector().toString());
             if(!map.containsKey(lyr)) {
                 map.put(lyr, new ArrayList<SiTrackerHitStrip1D>());

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/StripMPAlignmentInput.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/StripMPAlignmentInput.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/StripMPAlignmentInput.java	Mon Nov  3 02:54:53 2014
@@ -19,9 +19,10 @@
 import java.util.List;
 import java.util.Map;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
+//===> import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.tracking.TrackUtils;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.event.RawTrackerHit;
 import org.lcsim.event.Track;
 import org.lcsim.event.TrackerHit;
@@ -286,7 +287,9 @@
         
    
         int layer = strip.layer();
-        int side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? 10000 : 20000;
+        HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) strip.rawhits().get(0)).getDetectorElement();
+        //===> int side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? 10000 : 20000;
+        int side = sensor.isTopLayer() ? 10000 : 20000;
 
         
         if(_DEBUG) {
@@ -388,7 +391,9 @@
         _error[2] = res_local.get("wreserr");
         
         double vdiffy = res_local.get("vdiffTrky");
-        String side = SvtUtils.getInstance().isTopLayer((SiSensor)((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "top" : "bottom";
+        HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) strip.rawhits().get(0)).getDetectorElement();
+        String side = sensor.isTopLayer() ? "top" : "bottom";        
+        //===> String side = SvtUtils.getInstance().isTopLayer((SiSensor)((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "top" : "bottom";
         //Fill residuals vs distrance from center of plane in the v directions
         aida.profile1D("res_u_vs_ydiff_layer_" + strip.layer() + "_" + side).fill(vdiffy,_resid[0]);
 
@@ -493,11 +498,14 @@
 
     private void PrintStripResiduals(HelicalTrackStrip strip) {
         
-        String side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "top" : "bottom";        
+        HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) strip.rawhits().get(0)).getDetectorElement();
+        String side = sensor.isTopLayer() ? "top" : "bottom";        
+        //===> String side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "top" : "bottom";        
         
         if (_DEBUG) {
             System.out.printf("%s: --- Alignment Results for this Strip ---\n",this.getClass().getSimpleName());            
-            String sensor_type = SvtUtils.getInstance().isAxial((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "axial" : "stereo";
+            //===> String sensor_type = SvtUtils.getInstance().isAxial((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? "axial" : "stereo";
+            String sensor_type = sensor.isAxial() ? "axial" : "stereo";
             System.out.printf("%s: Strip layer %4d is %s in %s  at origin %s\n",this.getClass().getSimpleName(), strip.layer(),sensor_type, side, strip.origin().toString());
             System.out.printf("%s: u=%s v=%s w=%s\n",this.getClass().getSimpleName(), strip.u().toString(),strip.v().toString(),strip.w().toString());
             System.out.printf("%s: Residuals (u,v,w) : %5.5e %5.5e %5.5e\n",this.getClass().getSimpleName(), _resid[0], _resid[1], _resid[2]);
@@ -850,7 +858,9 @@
         Hep3Vector corigin = strip.origin();
         double vmeas = corigin.y(); //THis is wrong
         int layer = strip.layer();
-        int side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? 10000 : 20000;
+        HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) strip.rawhits().get(0)).getDetectorElement();
+        int side = sensor.isTopLayer() ? 10000 : 20000;
+        //===> int side = SvtUtils.getInstance().isTopLayer((SiSensor) ((RawTrackerHit)strip.rawhits().get(0)).getDetectorElement()) ? 10000 : 20000;
 
         if(_DEBUG) {
             System.out.printf("%s: --- Calculate global derivatives ---\n",this.getClass().getSimpleName());

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/TrackingGeometryChecker.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/TrackingGeometryChecker.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/TrackingGeometryChecker.java	Mon Nov  3 02:54:53 2014
@@ -3,11 +3,11 @@
 import java.util.ArrayList;
 import java.util.List;
 
-import org.hps.conditions.deprecated.SvtUtils;
+
 import org.lcsim.detector.IDetectorElement;
 import org.lcsim.detector.identifier.IIdentifier;
 import org.lcsim.detector.identifier.IIdentifierHelper;
-import org.lcsim.detector.tracker.silicon.SiSensor;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiTrackerIdentifierHelper;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.SimTrackerHit;
@@ -35,15 +35,15 @@
 		 // Get all of the sensors composing the SVT and add them to the set of all sensors
         IDetectorElement detectorElement = arg0.getDetectorElement().findDetectorElement("Tracker");
         IIdentifierHelper helper = detectorElement.getIdentifierHelper();
-        List<SiSensor> sensors = new ArrayList<SiSensor>();
-		sensors.addAll(detectorElement.findDescendants(SiSensor.class));
+        List<HpsSiSensor> sensors = new ArrayList<HpsSiSensor>();
+		sensors.addAll(detectorElement.findDescendants(HpsSiSensor.class));
         System.out.printf("%s: Total number of sensors: %d\n",getClass().getSimpleName(), sensors.size());
 
         IIdentifier sensorIdent;
         SiTrackerIdentifierHelper sensorHelper;
         String description;
         // Loop through all of the sensors and fill the maps
-        for (SiSensor sensor : sensors) {
+        for (HpsSiSensor sensor : sensors) {
 
             // Get the sensor identifier
             sensorIdent = sensor.getIdentifier();
@@ -60,7 +60,7 @@
             
             System.out.printf("%s: Sensor name %s\n",getClass().getSimpleName(), sensor.getName());
             System.out.printf("%s: Sensor position %s\n",getClass().getSimpleName(), sensor.getGeometry().getPosition().toString());
-            System.out.printf("%s: Sensor is %s %s \n",getClass().getSimpleName(), SvtUtils.getInstance().isTopLayer(sensor)?"top":"bottom", SvtUtils.getInstance().isAxial(sensor)?"axial":"stereo");
+            System.out.printf("%s: Sensor is %s %s \n",getClass().getSimpleName(), sensor.isTopLayer()?"top":"bottom", sensor.isAxial()?"axial":"stereo");
             System.out.printf("%s: layerNumber %d\n",getClass().getSimpleName(), layerNumber);
             System.out.printf("%s: moduleNumber %d\n",getClass().getSimpleName(), moduleNumber);
             System.out.printf("%s: sideNumber %d\n",getClass().getSimpleName(), sideNumber);

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/TrackingReconstructionPlots.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/TrackingReconstructionPlots.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/TrackingReconstructionPlots.java	Mon Nov  3 02:54:53 2014
@@ -15,9 +15,6 @@
 import java.util.logging.Logger;
 
 import org.hps.conditions.deprecated.BeamlineConstants;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants;
-import org.hps.conditions.deprecated.HPSSVTCalibrationConstants.ChannelConstants;
-import org.hps.conditions.deprecated.SvtUtils;
 import org.hps.recon.ecal.HPSEcalCluster;
 import org.hps.recon.tracking.DumbShaperFit;
 import org.hps.recon.tracking.HelixConverter;
@@ -26,6 +23,7 @@
 import org.hps.recon.tracking.StraightLineTrack;
 import org.hps.recon.tracking.TrackUtils;
 import org.hps.util.Resettable;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
 import org.lcsim.detector.tracker.silicon.SiSensor;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.LCIOParameters.ParameterName;
@@ -616,8 +614,8 @@
 //            htc.resetTrackDirection();
             double x = htc.getPosition()[0];
             double y = htc.getPosition()[1];
-            SiSensor sensor = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
-            if (SvtUtils.getInstance().isTopLayer(sensor)) {
+            HpsSiSensor sensor = ((HpsSiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
+            if(sensor.isTopLayer()){
                 layersTop[htc.Layer() - 1]++;
                 Hep3Vector sensorPos = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement()).getGeometry().getPosition();
                 if (htc.Layer() == 1) {
@@ -792,10 +790,10 @@
                     aida.histogram1D(modNum + "Residual Y(mm) Bottom").fill(htcross.getCorrectedPosition().z() - zTr);//these hits should be rotated track hits already
 
                 }
-                SiSensor sensor = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
+                HpsSiSensor sensor = ((HpsSiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
                 double x = htcross.getCorrectedPosition().y();
                 double y = htcross.getCorrectedPosition().z();
-                if (SvtUtils.getInstance().isTopLayer(sensor)) {
+                if(sensor.isTopLayer()) {
                     layersTop[htc.Layer() - 1]++;
                     Hep3Vector sensorPos = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement()).getGeometry().getPosition();
                     if (htc.Layer() == 1) {
@@ -835,8 +833,7 @@
                     for (HelicalTrackStrip hts : htcross.getStrips()) {
                         double clusterSum = 0;
                         for (RawTrackerHit rawHit : (List<RawTrackerHit>) hts.rawhits()) {
-                            ChannelConstants constants = HPSSVTCalibrationConstants.getChannelConstants((SiSensor) rawHit.getDetectorElement(), rawHit.getIdentifierFieldValue("strip"));
-                            for (ShapeFitParameters fit : _shaper.fitShape(rawHit, constants)) {
+                            for (ShapeFitParameters fit : _shaper.fitShape(rawHit)) {
                                 double amp = fit.getAmp();
                                 clusterSum += amp;
                                 aida.histogram1D("Amp (HitOnTrack)").fill(amp);

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