Author: [log in to unmask]
Date: Wed May 27 19:03:58 2015
New Revision: 3046
Log:
Add class for extracting run information from spreadsheet export.
Added:
java/trunk/conditions/src/main/java/org/hps/conditions/run/RunRange.java
Added: java/trunk/conditions/src/main/java/org/hps/conditions/run/RunRange.java
=============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/run/RunRange.java (added)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/run/RunRange.java Wed May 27 19:03:58 2015
@@ -0,0 +1,270 @@
+package org.hps.conditions.run;
+
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Iterator;
+import java.util.LinkedHashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+
+import org.apache.commons.csv.CSVRecord;
+
+/**
+ * Used with the {@link RunSpreadsheet} to find ranges of runs where columns have the same values so they can be assigned
+ * a conditions record with a run start and end range.
+ * <p>
+ * Bad rows such as ones without run numbers or with invalid data values are skipped and not included in a range.
+ *
+ * @author Jeremy McCormick
+ */
+public final class RunRange {
+
+ /**
+ * Find run ranges for conditions data given a set of column names and the full run spreadsheet.
+ *
+ * @param runSheet the run spreadsheet data (from CSV file)
+ * @param columnNames the names of the columns
+ * @return the list of run ranges
+ */
+ public static final List<RunRange> findRunRanges(final RunSpreadsheet runSheet, final Set<String> columnNames) {
+
+ final List<RunRange> ranges = new ArrayList<RunRange>();
+
+ final Iterator<CSVRecord> it = runSheet.getRecords().iterator();
+ CSVRecord record = it.next();
+
+ RunRange range = null;
+
+ // Iterate over all the records.
+ while (it.hasNext()) {
+ record = it.next();
+ // Is the record valid?
+ if (isValidRecord(record, columnNames)) {
+ if (range == null) {
+ // Create new range for the valid row.
+ range = new RunRange(columnNames);
+ } else {
+ // If this record is not in the range then add a new range.
+ if (!range.inRange(record)) {
+ // Add the current range and create a new one.
+ ranges.add(range);
+ range = new RunRange(columnNames);
+ }
+ }
+
+ // Update the range from the current record.
+ range.update(record);
+ } else {
+ if (range != null) {
+ // Add the range and set to null as this record is invalid.
+ ranges.add(range);
+ range = null;
+ }
+ }
+ }
+
+ return ranges;
+ }
+
+ /**
+ * Return <code>true</code> if the <code>CSVRecord</code> is valid, which means it has a run number and
+ * data in the columns used by this range.
+ *
+ * @param record the <code>CSVRecord</code> to check
+ * @param columnNames the names of the columns
+ * @return <code>true</code> if record is valid
+ */
+ private static boolean isValidRecord(final CSVRecord record, final Set<String> columnNames) {
+ try {
+ // Check if run number can be parsed.
+ Integer.parseInt(record.get("run"));
+ } catch (final NumberFormatException e) {
+ // Run number is bad.
+ return false;
+ }
+ for (final String columnName : columnNames) {
+ // Check that required column data is not null, blank, or empty string.
+ if (record.get(columnName) == null || "".equals(record.get(columnName)) || record.get(columnName).length() == 0) {
+ return false;
+ }
+ }
+ return true;
+ }
+
+ /**
+ * The names of the columns.
+ */
+ private final Set<String> columnNames;
+
+ /**
+ * The start of the run range.
+ */
+ private int runEnd = Integer.MIN_VALUE;
+
+ /**
+ * The end of the run range.
+ */
+ private int runStart = Integer.MAX_VALUE;
+
+ /**
+ * The mapping of column names to values.
+ */
+ private Map<String, String> values = new LinkedHashMap<String, String>();
+
+ /**
+ * Create a new range.
+ *
+ * @param columnNames the names of the columns
+ */
+ RunRange(final Set<String> columnNames) {
+ if (columnNames == null) {
+ throw new IllegalArgumentException("columnNames is null");
+ }
+ this.columnNames = columnNames;
+ }
+
+ /**
+ * Get the last run number in the range.
+ *
+ * @return the last run number in the range
+ */
+ public int getRunEnd() {
+ return runEnd;
+ }
+
+ /**
+ * Get the first run number in the range.
+ *
+ * @return the first run number in the range
+ */
+ public int getRunStart() {
+ return runStart;
+ }
+
+ /**
+ * Get get value of a field by column name.
+ *
+ * @param columnName the column name
+ * @return the value of the field
+ */
+ public String getValue(String columnName) {
+ return this.values.get(columnName);
+ }
+
+ /**
+ * Get the raw values of the data.
+ *
+ * @return the raw data values
+ */
+ public Collection<String> getValues() {
+ return this.values.values();
+ }
+
+ /**
+ * Get the names of the columns used by this range.
+ *
+ * @return the names of the columns
+ */
+ public Set<String> getColumnNames() {
+ return this.columnNames;
+ }
+
+ /**
+ * Return <code>true</code> if the record is in the range, e.g. its data values are the same.
+ *
+ * @param record the <code>CSVRecord</code> containing the run data
+ * @return <code>true</code> if the the record is in range
+ */
+ private boolean inRange(final CSVRecord record) {
+ for (final String columnName : columnNames) {
+ if (!record.get(columnName).equals(this.values.get(columnName))) {
+ return false;
+ }
+ }
+ return true;
+ }
+
+ /**
+ * Update the range from a record.
+ * @param record the <code>CSVRecord</code> with the run's data
+ */
+ private void update(final CSVRecord record) {
+ final int run = Integer.parseInt(record.get("run"));
+ if (run < runStart) {
+ this.runStart = run;
+ }
+ if (run > runEnd) {
+ this.runEnd = run;
+ }
+ if (values.size() == 0) {
+ for (final String columnName : columnNames) {
+ this.values.put(columnName, record.get(columnName));
+ }
+ }
+ }
+
+ /**
+ * Convert this object to a string.
+ *
+ * @return this object converted to a string
+ */
+ public String toString() {
+ StringBuffer sb = new StringBuffer();
+ sb.append("RunRange { ");
+ sb.append("runStart: " + this.runStart + ", ");
+ sb.append("runEnd: " + this.runEnd + ", ");
+ for (String columnName : columnNames) {
+ sb.append(columnName + ": " + values.get(columnName) + ", " );
+ }
+ sb.setLength(sb.length() - 2);
+ sb.append(" }");
+ return sb.toString();
+ }
+
+ /**
+ * Get the list of unique values from a set of run ranges.
+ *
+ * @param ranges the run ranges
+ * @return the list of unique values from the field values
+ */
+ public static List<Collection<String>> getUniqueValues(List<RunRange> ranges) {
+ Iterator<RunRange> it = ranges.iterator();
+ List<Collection<String>> uniqueValuesList = new ArrayList<Collection<String>>();
+ while(it.hasNext()) {
+ RunRange range = it.next();
+ Collection<String> values = range.getValues();
+ if (!contains(values, uniqueValuesList)) {
+ uniqueValuesList.add(values);
+ }
+ }
+ return uniqueValuesList;
+ }
+
+ /**
+ * Return <code>true</code> if the values are already in the unique values list.
+ *
+ * @param values the list of field values for a row
+ * @param uniqueValuesList the unique values list
+ * @return <code>true</code> if the values are already in the unique values list
+ */
+ private static boolean contains(Collection<String> values, List<Collection<String>> uniqueValuesList) {
+ for (Collection<String> uniqueValues : uniqueValuesList) {
+ Iterator<String> valuesIterator = values.iterator();
+ Iterator<String> uniqueValuesIterator = uniqueValues.iterator();
+ boolean equals = true;
+ while (valuesIterator.hasNext() && uniqueValuesIterator.hasNext()) {
+ String value = valuesIterator.next();
+ String uniqueValue = uniqueValuesIterator.next();
+ if (!value.equals(uniqueValue)) {
+ equals = false;
+ break;
+ }
+ }
+ if (equals) {
+ return true;
+ }
+ }
+ return false;
+ }
+}
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