Author: [log in to unmask]
Date: Tue Jan 5 14:51:59 2016
New Revision: 4083
Log:
Add generic access to perigee parameters along gbl trajectory. Re-organize some functions associated with the trajectory as members instead of static.
Modified:
java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/FittedGblTrajectory.java
java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/MakeGblTracks.java
Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/FittedGblTrajectory.java
=============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/FittedGblTrajectory.java (original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/FittedGblTrajectory.java Tue Jan 5 14:51:59 2016
@@ -1,13 +1,20 @@
package org.hps.recon.tracking.gbl;
+import hep.physics.matrix.SymmetricMatrix;
import hep.physics.vec.Hep3Vector;
import java.util.Map;
-
-import org.hps.recon.tracking.gbl.FittedGblTrajectory.GBLPOINT;
+import java.util.logging.Logger;
+
+import org.apache.commons.math3.util.Pair;
+import org.hps.recon.tracking.HpsHelicalTrackFit;
+import org.hps.recon.tracking.TrackUtils;
+import org.hps.recon.tracking.gbl.matrix.Matrix;
import org.hps.recon.tracking.gbl.matrix.SymMatrix;
import org.hps.recon.tracking.gbl.matrix.Vector;
import org.lcsim.event.Track;
+import org.lcsim.fit.helicaltrack.HelicalTrackFit;
+import org.lcsim.fit.helicaltrack.HelixUtils;
/**
* A class that collects information about a fitted GBL trajectory.
@@ -16,6 +23,8 @@
*
*/
public class FittedGblTrajectory {
+
+ public static Logger LOGGER = Logger.getLogger(FittedGblTrajectory.class.getName());
public enum GBLPOINT {
IP(0), LAST(1), VERTEX(2);
@@ -103,14 +112,29 @@
// find the GBL point index
int gblPointIndex = getPointIndex(point);
+
+ // get the results
+ getResults(gblPointIndex, locPar, locCov);
+
+ }
+
+
+ /**
+ * Find the corrections and covariance matrix for a particular point on the GBL trajectory
+ * @param iLabel
+ * @param locPar
+ * @param locCov
+ */
+ public void getResults(int iLabel, Vector locPar, SymMatrix locCov) {
// Get the result from the trajectory
- int ok = _traj.getResults(gblPointIndex, locPar, locCov);
+ int ok = _traj.getResults(iLabel, locPar, locCov);
// check that the fit was ok
if( ok != 0)
throw new RuntimeException("Trying to extract GBL corrections for fit that failed!?");
}
+
/**
* Find the path length to this point.
@@ -163,6 +187,137 @@
}
+
+ /**
+ * Get the corrected perigee parameters and covariance matrix for a point on the {@link GblTrajectory}.
+ *
+ * FIXME the covariance matrix is not properly propagated along the trajectory right now!
+ *
+ * @param htf - helix to be corrected
+ * @param point - {@link GBLPOINT} on the trajectory
+ * @param bfield - magnitude of B-field.
+ * @return
+ */
+ public Pair<double[], SymmetricMatrix> getCorrectedPerigeeParameters(HelicalTrackFit htf, GBLPOINT point, double bfield) {
+
+ // find the point on the trajectory from the GBLPOINT
+ int iLabel = getPointIndex(point);
+
+ return getCorrectedPerigeeParameters(htf, iLabel, bfield);
+
+ }
+
+
+ /**
+ * Get the corrected perigee parameters and covariance matrix for a point on the {@link GblTrajectory}.
+ *
+ * FIXME the covariance matrix is not properly propagated along the trajectory right now!
+ *
+ * @param htf - helix to be corrected
+ * @param iLabel - label of the point on the {@link GblTrajectory}
+ * @param bfield - magnitude of B-field.
+ * @return the corrected perigee parameters
+ */
+ public Pair<double[], SymmetricMatrix> getCorrectedPerigeeParameters(HelicalTrackFit htf, int iLabel, double bfield) {
+
+ // Get corrections from GBL fit
+ Vector locPar = new Vector(5);
+ SymMatrix locCov = new SymMatrix(5);
+
+ // Extract the corrections to the track parameters and the covariance matrix from the GBL trajectory
+ getResults(iLabel, locPar, locCov);
+
+ // Use the super class to keep track of reference point of the helix
+ HpsHelicalTrackFit helicalTrackFit = new HpsHelicalTrackFit(htf);
+ double[] refIP = helicalTrackFit.getRefPoint();
+
+ // Calculate new reference point for this point
+ // This is the intersection of the helix with the plane
+ // The trajectory has this information already in the form of a map between GBL point and path length
+ double pathLength = getPathLength(iLabel);
+ Hep3Vector refPointVec = HelixUtils.PointOnHelix(helicalTrackFit, pathLength);
+ double[] refPoint = new double[]{refPointVec.x(), refPointVec.y()};
+
+ LOGGER.info("pathLength " + pathLength + " -> refPointVec " + refPointVec.toString());
+
+ // Propagate the helix to new reference point
+ double[] helixParametersAtPoint = TrackUtils.getParametersAtNewRefPoint(refPoint, helicalTrackFit);
+
+ // Create a new helix with the new parameters and the new reference point
+ HpsHelicalTrackFit helicalTrackFitAtPoint = new HpsHelicalTrackFit(helixParametersAtPoint, helicalTrackFit.covariance(),
+ helicalTrackFit.chisq(), helicalTrackFit.ndf(), helicalTrackFit.PathMap(),
+ helicalTrackFit.ScatterMap(), refPoint);
+
+ // find the corrected perigee track parameters at this point
+ double[] helixParametersAtPointCorrected = GblUtils.getCorrectedPerigeeParameters(locPar, helicalTrackFitAtPoint, bfield);
+
+ // create a new helix
+ HpsHelicalTrackFit helicalTrackFitAtPointCorrected = new HpsHelicalTrackFit(helixParametersAtPointCorrected, helicalTrackFit.covariance(),
+ helicalTrackFit.chisq(), helicalTrackFit.ndf(), helicalTrackFit.PathMap(),
+ helicalTrackFit.ScatterMap(), refPoint);
+
+ // change reference point back to the original one
+ double[] helixParametersAtIPCorrected = TrackUtils.getParametersAtNewRefPoint(refIP, helicalTrackFitAtPointCorrected);
+
+ // create a new helix for the new parameters at the IP reference point
+ HpsHelicalTrackFit helicalTrackFitAtIPCorrected = new HpsHelicalTrackFit(helixParametersAtIPCorrected, helicalTrackFit.covariance(),
+ helicalTrackFit.chisq(), helicalTrackFit.ndf(), helicalTrackFit.PathMap(),
+ helicalTrackFit.ScatterMap(), refIP);
+
+
+ // Calculate the updated covariance
+ Matrix jacobian = GblUtils.getCLToPerigeeJacobian(helicalTrackFit, helicalTrackFitAtIPCorrected, bfield);
+ Matrix helixCovariance = jacobian.times(locCov.times(jacobian.transpose()));
+ SymmetricMatrix cov = new SymmetricMatrix(5);
+ for (int i = 0; i < 5; i++) {
+ for (int j = 0; j < 5; j++) {
+ if (i >= j) {
+ cov.setElement(i, j, helixCovariance.get(i, j));
+ }
+ }
+ }
+ LOGGER.info("corrected helix covariance:\n" + cov);
+
+ double parameters_gbl[] = helicalTrackFitAtIPCorrected.parameters();
+
+ return new Pair<double[], SymmetricMatrix>(parameters_gbl,cov);
+ }
+
+
+
+ /**
+ * Extract kinks across the trajectory.
+ * @return kinks in a {@link GBLKinkData} object.
+ */
+ public GBLKinkData getKinks() {
+ GblTrajectory traj = this._traj;
+ // get corrections from GBL fit
+ Vector locPar = new Vector(5);
+ SymMatrix locCov = new SymMatrix(5);
+ float[] lambdaKinks = new float[traj.getNumPoints() - 1];
+ double[] phiKinks = new double[traj.getNumPoints() - 1];
+
+ double oldPhi = 0, oldLambda = 0;
+ for (int i = 0; i < traj.getNumPoints(); i++) {
+ traj.getResults(i + 1, locPar, locCov); // vertex point
+ double newPhi = locPar.get(GBLPARIDX.XTPRIME.getValue());
+ double newLambda = locPar.get(GBLPARIDX.YTPRIME.getValue());
+ if (i > 0) {
+ lambdaKinks[i - 1] = (float) (newLambda - oldLambda);
+ phiKinks[i - 1] = newPhi - oldPhi;
+ // System.out.println("phikink: " + (newPhi - oldPhi));
+ }
+ oldPhi = newPhi;
+ oldLambda = newLambda;
+ }
+
+ return new GBLKinkData(lambdaKinks, phiKinks);
+ }
+
+
+
+
+
}
Modified: java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/MakeGblTracks.java
=============================================================================
--- java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/MakeGblTracks.java (original)
+++ java/trunk/tracking/src/main/java/org/hps/recon/tracking/gbl/MakeGblTracks.java Tue Jan 5 14:51:59 2016
@@ -19,8 +19,6 @@
import org.hps.recon.tracking.TrackType;
import org.hps.recon.tracking.TrackUtils;
import org.hps.recon.tracking.gbl.matrix.Matrix;
-import org.hps.recon.tracking.gbl.matrix.SymMatrix;
-import org.hps.recon.tracking.gbl.matrix.Vector;
import org.lcsim.constants.Constants;
import org.lcsim.detector.ITransform3D;
import org.lcsim.detector.tracker.silicon.ChargeCarrier;
@@ -60,7 +58,16 @@
}
}
- public static Pair<Track, GBLKinkData> makeCorrectedTrack(FittedGblTrajectory fittedTraj, HelicalTrackFit helix, List<TrackerHit> trackHits, int trackType, double bfield) {
+ /**
+ * Create a new {@link BaseTrack} from a {@link FittedGblTrajectory}.
+ * @param fittedGblTrajectory
+ * @param helicalTrackFit
+ * @param hitsOnTrack
+ * @param trackType
+ * @param bfield
+ * @return the new {@link BaseTrack} and the kinks along the {@link GblTrajectory} as a {@link Pair}.
+ */
+ public static Pair<Track, GBLKinkData> makeCorrectedTrack(FittedGblTrajectory fittedGblTrajectory, HelicalTrackFit helicalTrackFit, List<TrackerHit> hitsOnTrack, int trackType, double bfield) {
// Initialize the reference point to the origin
double[] ref = new double[]{0., 0., 0.};
@@ -68,210 +75,46 @@
BaseTrack trk = new BaseTrack();
// Add the hits to the track
- for (TrackerHit hit : trackHits) {
+ for (TrackerHit hit : hitsOnTrack) {
trk.addHit(hit);
}
- // Set state at vertex
- Pair<double[], SymmetricMatrix> correctedHelixParams = getGblCorrectedHelixParameters(helix, fittedTraj, bfield, FittedGblTrajectory.GBLPOINT.IP);
+ // Set base track parameters
+ Pair<double[], SymmetricMatrix> correctedHelixParams = fittedGblTrajectory.getCorrectedPerigeeParameters(helicalTrackFit, FittedGblTrajectory.GBLPOINT.IP, bfield);
trk.setTrackParameters(correctedHelixParams.getFirst(), bfield);// hack to set the track charge
trk.getTrackStates().clear();
- TrackState stateVertex = new BaseTrackState(correctedHelixParams.getFirst(), ref, correctedHelixParams.getSecond().asPackedArray(true), TrackState.AtIP, bfield);
- trk.getTrackStates().add(stateVertex);
-
- // Set state at last point
- Pair<double[], SymmetricMatrix> correctedHelixParamsLast = getGblCorrectedHelixParameters(helix, fittedTraj, bfield, FittedGblTrajectory.GBLPOINT.LAST);
+ // Set state at IP
+ TrackState stateIP = new BaseTrackState(correctedHelixParams.getFirst(), ref, correctedHelixParams.getSecond().asPackedArray(true), TrackState.AtIP, bfield);
+ trk.getTrackStates().add(stateIP);
+
+ // Set state at last point on trajectory
+ Pair<double[], SymmetricMatrix> correctedHelixParamsLast = fittedGblTrajectory.getCorrectedPerigeeParameters(helicalTrackFit, FittedGblTrajectory.GBLPOINT.LAST, bfield);
TrackState stateLast = new BaseTrackState(correctedHelixParamsLast.getFirst(), ref, correctedHelixParamsLast.getSecond().asPackedArray(true), TrackState.AtLastHit, bfield);
trk.getTrackStates().add(stateLast);
- GBLKinkData kinkData = getKinks(fittedTraj.get_traj());
+ // Extract kinks from trajectory
+ GBLKinkData kinkData = fittedGblTrajectory.getKinks();
// Set other info needed
- trk.setChisq(fittedTraj.get_chi2());
- trk.setNDF(fittedTraj.get_ndf());
+ trk.setChisq(fittedGblTrajectory.get_chi2());
+ trk.setNDF(fittedGblTrajectory.get_ndf());
trk.setFitSuccess(true);
trk.setRefPointIsDCA(true);
trk.setTrackType(TrackType.setGBL(trackType, true));
// Add the track to the list of tracks
// tracks.add(trk);
- LOGGER.info(String.format("helix chi2 %f ndf %d gbl chi2 %f ndf %d\n", helix.chisqtot(), helix.ndf()[0] + helix.ndf()[1], trk.getChi2(), trk.getNDF()));
+ LOGGER.info(String.format("helix chi2 %f ndf %d gbl chi2 %f ndf %d\n", helicalTrackFit.chisqtot(), helicalTrackFit.ndf()[0] + helicalTrackFit.ndf()[1], trk.getChi2(), trk.getNDF()));
if (LOGGER.getLevel().intValue() <= Level.INFO.intValue()) {
for (int i = 0; i < 5; ++i) {
- LOGGER.info(String.format("param %d: %.10f -> %.10f helix-gbl= %f", i, helix.parameters()[i], trk.getTrackParameter(i), helix.parameters()[i] - trk.getTrackParameter(i)));
+ LOGGER.info(String.format("param %d: %.10f -> %.10f helix-gbl= %f", i, helicalTrackFit.parameters()[i], trk.getTrackParameter(i), helicalTrackFit.parameters()[i] - trk.getTrackParameter(i)));
}
}
return new Pair<Track, GBLKinkData>(trk, kinkData);
}
- /**
- * Compute the updated helix parameters and covariance matrix at a given
- * point along the trajectory.
- *
- * @param htf - original seed track
- * @param fittedGblTraj - fitted GBL trajectory
- * @param point - the GBL point along the track where the result is computed.
- * @return corrected parameters.
- */
- public static Pair<double[], SymmetricMatrix> getGblCorrectedHelixParameters(HelicalTrackFit htf, FittedGblTrajectory fittedGblTraj, double bfield, FittedGblTrajectory.GBLPOINT point) {
-
- LOGGER.info("Get corrected parameters at GblPoint: " + point.toString() + "( " + point.name() + ")");
-
- // Get corrections from GBL fit
- Vector locPar = new Vector(5);
- SymMatrix locCov = new SymMatrix(5);
-
- // Extract the corrections to the track parameters and the covariance matrix from the GBL trajectory
- fittedGblTraj.getResults(point, locPar, locCov);
-
- // Use the super class to keep track of reference point of the helix
- HpsHelicalTrackFit helicalTrackFit = new HpsHelicalTrackFit(htf);
- double[] refIP = helicalTrackFit.getRefPoint();
-
- // Calculate new reference point for this point
- // This is the intersection of the helix with the plane
- // The trajectory has this information already in the form of a map between GBL point and path length
- double pathLength = fittedGblTraj.getPathLength(point);
- Hep3Vector refPointVec = HelixUtils.PointOnHelix(helicalTrackFit, pathLength);
- double[] refPoint = new double[]{refPointVec.x(), refPointVec.y()};
-
- LOGGER.info("pathLength " + pathLength + " -> refPointVec " + refPointVec.toString());
-
- // Propagate the helix to new reference point
- double[] helixParametersAtPoint = TrackUtils.getParametersAtNewRefPoint(refPoint, helicalTrackFit);
-
- // Create a new helix with the new parameters and the new reference point
- HpsHelicalTrackFit helicalTrackFitAtPoint = new HpsHelicalTrackFit(helixParametersAtPoint, helicalTrackFit.covariance(),
- helicalTrackFit.chisq(), helicalTrackFit.ndf(), helicalTrackFit.PathMap(),
- helicalTrackFit.ScatterMap(), refPoint);
-
- // find the corrected perigee track parameters at this point
- double[] helixParametersAtPointCorrected = GblUtils.getCorrectedPerigeeParameters(locPar, helicalTrackFitAtPoint, bfield);
-
- // create a new helix
- HpsHelicalTrackFit helicalTrackFitAtPointCorrected = new HpsHelicalTrackFit(helixParametersAtPointCorrected, helicalTrackFit.covariance(),
- helicalTrackFit.chisq(), helicalTrackFit.ndf(), helicalTrackFit.PathMap(),
- helicalTrackFit.ScatterMap(), refPoint);
-
- // change reference point back to the original one
- double[] helixParametersAtIPCorrected = TrackUtils.getParametersAtNewRefPoint(refIP, helicalTrackFitAtPointCorrected);
-
- // create a new helix for the new parameters at the IP reference point
- HpsHelicalTrackFit helicalTrackFitAtIPCorrected = new HpsHelicalTrackFit(helixParametersAtIPCorrected, helicalTrackFit.covariance(),
- helicalTrackFit.chisq(), helicalTrackFit.ndf(), helicalTrackFit.PathMap(),
- helicalTrackFit.ScatterMap(), refIP);
-
-
- // Calculate the updated covariance
- Matrix jacobian = GblUtils.getCLToPerigeeJacobian(helicalTrackFit, helicalTrackFitAtIPCorrected, bfield);
- Matrix helixCovariance = jacobian.times(locCov.times(jacobian.transpose()));
- SymmetricMatrix cov = new SymmetricMatrix(5);
- for (int i = 0; i < 5; i++) {
- for (int j = 0; j < 5; j++) {
- if (i >= j) {
- cov.setElement(i, j, helixCovariance.get(i, j));
- }
- }
- }
- LOGGER.info("corrected helix covariance:\n" + cov);
-
- double parameters_gbl[] = helicalTrackFitAtIPCorrected.parameters();
-
- /*
-
- // Get seed helix parameters
- double qOverP = helicalTrackFit.curvature() / (Constants.fieldConversion * Math.abs(bfield) * Math.sqrt(1 + Math.pow(helicalTrackFit.slope(), 2)));
- double d0 = -1.0 * helicalTrackFit.dca(); // correct for different sign convention of d0 in perigee frame
- double z0 = helicalTrackFit.z0();
- double phi0 = helicalTrackFit.phi0();
- double lambda = Math.atan(helicalTrackFit.slope());
-
- // calculate new d0 and z0
-// Hep3Matrix perToClPrj = traj.get_track_data().getPrjPerToCl();
- Hep3Matrix perToClPrj = getPerToClPrj(helicalTrackFit);
-
- Hep3Matrix clToPerPrj = VecOp.inverse(perToClPrj);
- Hep3Vector corrPer = VecOp.mult(clToPerPrj, new BasicHep3Vector(xTCorr, yTCorr, 0.0));
-
- //d0
- double d0_corr = corrPer.y();
- double dca_gbl = -1.0 * (d0 + d0_corr);
-
- //z0
- double z0_corr = corrPer.z();
- double z0_gbl = z0 + z0_corr;
-
- //calculate new slope
- double lambda_gbl = lambda + yTPrimeCorr;
- double slope_gbl = Math.tan(lambda_gbl);
-
- // calculate new curvature
- double qOverP_gbl = qOverP + qOverPCorr;
-// double pt_gbl = (1.0 / qOverP_gbl) * Math.cos(lambda_gbl);
-// double C_gbl = Constants.fieldConversion * Math.abs(bfield) / pt_gbl;
- double C_gbl = Constants.fieldConversion * Math.abs(bfield) * qOverP_gbl / Math.cos(lambda_gbl);
-
- //calculate new phi0
- double phi0_gbl = phi0 + xTPrimeCorr - corrPer.x() * C_gbl;
-
- LOGGER.info("qOverP=" + qOverP + " qOverPCorr=" + qOverPCorr + " qOverP_gbl=" + qOverP_gbl + " ==> pGbl=" + 1.0 / qOverP_gbl + " C_gbl=" + C_gbl);
-
- LOGGER.info(String.format("corrected helix: d0=%f, z0=%f, omega=%f, tanlambda=%f, phi0=%f, p=%f", dca_gbl, z0_gbl, C_gbl, slope_gbl, phi0_gbl, Math.abs(1 / qOverP_gbl)));
- */
-
-
-
-// jacobian.print(15, 13);
-// Matrix helixCovariance = jacobian.times(locCov.times(jacobian.transpose()));
-// SymmetricMatrix cov = new SymmetricMatrix(5);
-// for (int i = 0; i < 5; i++) {
-// for (int j = 0; j < 5; j++) {
-// if (i >= j) {
-// cov.setElement(i, j, helixCovariance.get(i, j));
-// }
-// }
-// }
-// LOGGER.info("corrected helix covariance:\n" + cov);
-
- /*
- double parameters_gbl[] = new double[5];
- parameters_gbl[HelicalTrackFit.dcaIndex] = dca_gbl;
- parameters_gbl[HelicalTrackFit.phi0Index] = phi0_gbl;
- parameters_gbl[HelicalTrackFit.curvatureIndex] = C_gbl;
- parameters_gbl[HelicalTrackFit.z0Index] = z0_gbl;
- parameters_gbl[HelicalTrackFit.slopeIndex] = slope_gbl;
- */
-
-
-
- return new Pair<double[], SymmetricMatrix>(parameters_gbl, cov);
- }
-
- public static GBLKinkData getKinks(GblTrajectory traj) {
-
- // get corrections from GBL fit
- Vector locPar = new Vector(5);
- SymMatrix locCov = new SymMatrix(5);
- float[] lambdaKinks = new float[traj.getNumPoints() - 1];
- double[] phiKinks = new double[traj.getNumPoints() - 1];
-
- double oldPhi = 0, oldLambda = 0;
- for (int i = 0; i < traj.getNumPoints(); i++) {
- traj.getResults(i + 1, locPar, locCov); // vertex point
- double newPhi = locPar.get(FittedGblTrajectory.GBLPARIDX.XTPRIME.getValue());
- double newLambda = locPar.get(FittedGblTrajectory.GBLPARIDX.YTPRIME.getValue());
- if (i > 0) {
- lambdaKinks[i - 1] = (float) (newLambda - oldLambda);
- phiKinks[i - 1] = newPhi - oldPhi;
-// System.out.println("phikink: " + (newPhi - oldPhi));
- }
- oldPhi = newPhi;
- oldLambda = newLambda;
- }
-
- return new GBLKinkData(lambdaKinks, phiKinks);
- }
+
/**
* Do a GBL fit to an arbitrary set of strip hits, with a starting value of
@@ -301,6 +144,15 @@
return mergedTrack;
}
+ /**
+ * Do a GBL fit to a list of {@link TrackerHit}.
+ * @param htf - seed fit
+ * @param stripHits - list of {@link TrackerHit}.
+ * @param _scattering - estimation of the multiple scattering {@link MultipleScattering}.
+ * @param bfield - magnitude of B-field.
+ * @param debug - debug flag.
+ * @return
+ */
public static FittedGblTrajectory doGBLFit(HelicalTrackFit htf, List<TrackerHit> stripHits, MultipleScattering _scattering, double bfield, int debug) {
List<GBLStripClusterData> stripData = makeStripData(htf, stripHits, _scattering, bfield, debug);
double bfac = Constants.fieldConversion * bfield;
@@ -309,6 +161,15 @@
return fit;
}
+ /**
+ * Create a list of {@link GBLStripClusterData} objects that can be used as input to the GBL fitter.
+ * @param htf
+ * @param stripHits
+ * @param _scattering
+ * @param _B
+ * @param _debug
+ * @return
+ */
public static List<GBLStripClusterData> makeStripData(HelicalTrackFit htf, List<TrackerHit> stripHits, MultipleScattering _scattering, double _B, int _debug) {
List<GBLStripClusterData> stripClusterDataList = new ArrayList<GBLStripClusterData>();
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