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HPS-SOFTWARE  December 2017

HPS-SOFTWARE December 2017

Subject:

Re: Question

From:

"McCormick, Jeremy I." <[log in to unmask]>

Reply-To:

Software for the Heavy Photon Search Experiment <[log in to unmask]>

Date:

Thu, 7 Dec 2017 21:23:00 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (1 lines)

The code in the db manager is

// Open the database connection.
this.openConnection();

// do conditions init
…

// Close the connection.
this.closeConnection();

The connection is only opened in the setDetector method of the conditions manager, not anywhere else, and it is closed after it is used.

So I am not sure what is going on to be honest...

> On Dec 7, 2017, at 1:20 PM, Maurik Holtrop <[log in to unmask]> wrote:
> 
> I agree that the code needs to keep trying, at least for some time, to connect to the DB, instead of crash right away. I don’t think that this is where the problem is.  The DB reports that there are 900+ jobs that have a connection open, but the connection is in  “sleeping” state”. What is up with that?
> 
> On the other hand, logging into the database did not have any delay associated with it. If the DB had too many connections open so it could not service our jobs, I would expect I could not connect with the mysql utility either. So I am not sure what is going on. Just reporting what I saw.
> 
> 
>> On Dec 7, 2017, at 4:15 PM, McCormick, Jeremy I. <[log in to unmask]> wrote:
>> 
>> The connection is supposed to be shutdown after the conditions are initialized for the run.
>> 
>> There was some code added awhile ago (not by me) that waits for an open connection by looping.  Perhaps these jobs are just waiting for an open db connection because we are running so many concurrent jobs?
>> 
>>> On Dec 7, 2017, at 9:37 AM, Maurik Holtrop <[log in to unmask]> wrote:
>>> 
>>> Looks like a bug.
>>> 
>>> The SHOW PROCESSLIST command to mysql show that there are 949 connections to the DB right now, most of them not doing anything but connecting to the hps_conditions database. Thus, I would conclude that the conditions database code is NOT closing its connections correctly.
>>> 
>>> Jeremy, this is your code, can you please look into this?
>>> 
>>> Best,
>>> 	Maurik
>>> 
>>> 
>>>> On Dec 7, 2017, at 10:58 AM, Rafayel Paremuzyan <[log in to unmask]> wrote:
>>>> 
>>>> HI, in pass7, looking into job statues, I see many jobs have several hours of wall time, while cpu time is only few minutes, or even less than a minute.
>>>> 
>>>> I just did ccpr and asked, if they can help to investigate this,
>>>> but also I want to make sure, if this is not related to the DB.
>>>> 
>>>> Looking into output log files, and calculating printouts of connection openning and connection closing,
>>>> it shows 13 connection openings and 8 closings.
>>>> 
>>>> ifarm1402> grep -i DatabaseConditionsManager hps_005782.252_4.0.1_Recon.err | grep Opening | wc
>>>> 13 117 1599
>>>> ifarm1402> grep -i DatabaseConditionsManager hps_005782.252_4.0.1_Recon.err | grep Closing | wc
>>>> 8 72 1032 ifarm1402>
>>>> 
>>>> Can someone of experts comment on this? whether all connection close and opens are printed in the log file?
>>>> 
>>>> You can have a look for example this log file
>>>> /lustre/expphy/work/hallb/hps/data/engrun2015/pass7/hps_005782.252_4.0.1_Recon.err
>>>> 
>>>> Rafo
>>>> 
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>> 
> 


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