diff -N cygAddJars.sh
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ cygAddJars.sh	23 Aug 2005 01:13:54 -0000	1.1
@@ -0,0 +1,19 @@

+#!/bin/sh
+
+old_cp=$CLASSPATH
+this_cp=""
+
+IFS='
+'
+
+until [ -z "$1" ]
+do
+  for jar in $(find "$1" -name "*.jar"); do
+    winp=$(cygpath -w $jar)
+    this_cp="$this_cp;$winp"
+  done
+
+  shift
+done
+
+echo ${this_cp}:${old_cp}

diff -N run.sh
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ run.sh	23 Aug 2005 01:13:54 -0000	1.1
@@ -0,0 +1,15 @@

+#!/bin/sh
+
+if [ -z "$JAS_HOME" ]; then
+  jas=/cygdrive/c/work/jas
+else
+  jas=$JAS_HOME
+fi
+
+if [ ! -e "$jas" ]; then
+  echo "JAS dir $jas does not exist." 
+fi
+
+cp=$(./cygAddJars.sh $jas ~/.JAS3/extensions)
+echo $cp
+java -cp "${cp}" org.lcsim.slic.diagnostics.Main $@