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Commit in lcsim/src/org/lcsim/event/base on MAIN
BaseReconstructedParticle.java+10-61.1 -> 1.2
BaseTrackerHit.java+13-111.1 -> 1.2
BaseTrack.java+160-111.1 -> 1.2
+183-28
3 modified files
Added to javadocs.

lcsim/src/org/lcsim/event/base
BaseReconstructedParticle.java 1.1 -> 1.2
diff -u -r1.1 -r1.2
--- BaseReconstructedParticle.java	25 Mar 2006 00:37:03 -0000	1.1
+++ BaseReconstructedParticle.java	25 Mar 2006 20:45:56 -0000	1.2
@@ -3,7 +3,7 @@
  *
  * Created on March 24, 2006, 9:30 AM
  *
- * $Id: BaseReconstructedParticle.java,v 1.1 2006/03/25 00:37:03 ngraf Exp $
+ * $Id: BaseReconstructedParticle.java,v 1.2 2006/03/25 20:45:56 ngraf Exp $
  */
 
 package org.lcsim.event.base;
@@ -173,7 +173,7 @@
     /**
      * Add a ParticleID object.
      * @see ParticleID
-     * @param pid
+     * @param pid The ParticleID to associate with this ReconstructedParticle
      */
     public void addParticleID(ParticleID pid)
     {
@@ -183,7 +183,7 @@
     
     /**
      * Add a particle that has been used to create this particle.
-     * @param particle
+     * @param particle A ReconstructedParticle which contributes to this ReconstructedParticle.
      */
     // TODO make sure kinematics of this particle are also updated
     public void addParticle(ReconstructedParticle particle)
@@ -193,7 +193,7 @@
     
     /**
      * Add a cluster that has been used to create this particle.
-     * @param cluster
+     * @param cluster A Cluster which contributes to this ReconstructedParticle.
      */
     // TODO make sure kinematics of this particle are also updated
     public void addCluster(Cluster cluster)
@@ -203,7 +203,7 @@
     
     /**
      * Add a track that has been used to create this particle.
-     * @param track
+     * @param track A Track which contributes to this ReconstructedParticle.
      */
     // TODO make sure kinematics of this particle are also updated
     public void addTrack(Track track)
@@ -211,8 +211,12 @@
         _tracks.add(track);
     }
     
-    /**Returns this particle's momentum and energy as a four vector
+    /**
+     * Returns this particle's momentum and energy as a four vector
+     * @return The four vector representation of this ReconstructedParticle.
      */
+    // TODO fix this so that adding tracks or clusters or ReconstructedParticle
+    // either updates the four-vector, or it can be set independently.
     public HepLorentzVector asFourVector()
     {
         return _fourVec;

lcsim/src/org/lcsim/event/base
BaseTrackerHit.java 1.1 -> 1.2
diff -u -r1.1 -r1.2
--- BaseTrackerHit.java	25 Mar 2006 00:37:04 -0000	1.1
+++ BaseTrackerHit.java	25 Mar 2006 20:45:56 -0000	1.2
@@ -3,7 +3,7 @@
  *
  * Created on March 24, 2006, 9:22 AM
  *
- * $Id: BaseTrackerHit.java,v 1.1 2006/03/25 00:37:04 ngraf Exp $
+ * $Id: BaseTrackerHit.java,v 1.2 2006/03/25 20:45:56 ngraf Exp $
  */
 
 package org.lcsim.event.base;
@@ -114,8 +114,8 @@
     
 //TrackerHit interface
     /**
-     * The hit position in [mm].
-     * @return 
+     * The (x,y,z) hit position in [mm].
+     * @return the cartesian position of this point.
      */
     public double[] getPosition()
     {
@@ -123,8 +123,8 @@
     }
     
     /**
-     * Covariance of the position (x,y,z)
-     * @return 
+     * Covariance of the position (x,y,z) as a 6 element array.
+     * @return the packed covariance matrix
      */
     public double[] getCovMatrix()
     {
@@ -132,8 +132,8 @@
     }
     
     /**
-     * The dE/dx of the hit in [GeV].
-     * @return 
+     * The energy deposited by this hit in [GeV].
+     * @return the energy deposit associated with this hit.
      */
     public double getdEdx()
     {
@@ -141,8 +141,9 @@
     }
     
     /**
-     * The  time of the hit in [ns].
-     * @return 
+     * The  time of the hit in [ns]. By convention, the earliest time of 
+     * energy deposition is used if this is a composite hit.
+     * @return the time of this hit.
      */
     public double getTime()
     {
@@ -153,8 +154,9 @@
      * Type of hit. Mapping of integer types to type names
      * through collection parameters "TrackerHitTypeNames"
      * and "TrackerHitTypeValues".
-     * @return 
+     * @return the integer type of this hit.
      */
+    // TODO define what this type is.
     public int getType()
     {
         return _type;
@@ -164,7 +166,7 @@
     /**
      * The raw data hits.
      * Check getType() to get actual data type.
-     * @return 
+     * @return the list of raw hits which contribute to this hit.
      */
     public List getRawHits()
     {

lcsim/src/org/lcsim/event/base
BaseTrack.java 1.1 -> 1.2
diff -u -r1.1 -r1.2
--- BaseTrack.java	25 Mar 2006 06:22:41 -0000	1.1
+++ BaseTrack.java	25 Mar 2006 20:45:56 -0000	1.2
@@ -3,7 +3,7 @@
  *
  * Created on March 24, 2006, 9:18 PM
  *
- * $Id: BaseTrack.java,v 1.1 2006/03/25 06:22:41 ngraf Exp $
+ * $Id: BaseTrack.java,v 1.2 2006/03/25 20:45:56 ngraf Exp $
  */
 
 package org.lcsim.event.base;
@@ -43,57 +43,94 @@
     
     // add following setters for subclasses.
     
-    public void setCharge(int charge)
-    {
-        _charge = charge;
-    }
-    
     // TODO replace this with a SpacePoint
+    /**
+     * Set the reference point for this track. By default it is (0,0,0).
+     * By definition, DCA, etc. is measured with respect to this point.
+     * @param point The (x,y,z) reference point for this track.
+     */
     public void setReferencePoint(double[] point)
     {
         _refPoint = point;
     }
     
+    /**
+     * Sets whether the reference point is the distance of closest
+     * approach to the origin.
+     * @param isDCA true if the reference point is the dca.
+     */
+    // TODO clarify this.
     public void setRefPointIsDCA(boolean isDCA)
     {
         _refPointIsDCA = isDCA;
     }
     
-    public void setMomentum( double[] p)
-    {
-        _momentum = p;
-    }
-    
+    /**
+     * If the track has  been successfully set, this should be set.
+     * Should only be set if the results of the fit are also set.
+     * Should encapsulate all this in a Fit object.
+     * False by default.
+     * @param success true if the track has successfully been set.
+     */
     public void setFitSuccess( boolean success)
     {
         _fitSuccess = success;
     }
     
+    /**
+     * Set the track parameters.
+     * @see Track.Parameters
+     * @param params The array of track parameters.
+     */
     public void setTrackParameters(double[] params)
     {
         _parameters = params;
     }
     
+    /**
+     * Set the covariance matrix for the track parameters.
+     * @param cov The covariance matrix as a double array.
+     */
+    // TODO replace this with Matrix
     public void setCovarianceMatrix( double[][] cov)
     {
         _covMatrix = cov;
     }
     
+    /**
+     * Set the chi-squared for the track fit.
+     * Not defined whether this is the full or reduced chi-squared.
+     * @param chisq The value of the track fit chi-squared.
+     */
+    // TODO verify if this is full or reduced chi-squared.
     public void setChisq( double chisq)
     {
         _chi2 = chisq;
     }
     
+    /**
+     * Set the number of degrees of freedom for this track fit.
+     * @param n The number of degrees of freedom for this track fit.
+     */
     public void setNDF( int n)
     {
         _ndf = n;
     }
     
+    /**
+     * Set the track type. Note that this is still undefined.
+     * @param type The track type
+     */
+    // TODO define this. replace int by enumeration.
     public void setTrackType(int type)
     {
         _type = type;
     }
     
+    /**
+     * Add a hit to this track.
+     * @param hit The TrackerHit to add to this track.
+     */
     public void addHit(TrackerHit hit)
     {
         _hits.add(hit);
@@ -106,6 +143,10 @@
         _dEdx += hit.getdEdx();
     }
     
+    /**
+     * Add a list of hits to this track.
+     * @param hits The list of TrackerHits to add to this track.
+     */
     public void addHits(List<TrackerHit> hits)
     {
         _hits.addAll(hits);
@@ -124,101 +165,209 @@
     // TODO add convenience methods to replace clunky interface
     // Track interface
     
+    /**
+     * The charge of the particle creating this track in units of the electron charge.
+     * @return The charge of the track.
+     */
     public int getCharge()
     {
         return _charge;
     }
     
+    /**
+     * Return the reference point of this track. Need to clarigy whether this is a point
+     * on the track or not.
+     * @return The reference point for this track.
+     */
+    // TODO augment this with a SpacePoint.
     public double[] getReferencePoint()
     {
         return _refPoint;
     }
+    /**
+     * Return the x position of the reference point for this track.
+     * @return The x position of the reference point for this track.
+     */
     public double getReferencePointX()
     {
         return _refPoint[0];
     }
+    /**
+     * Return the y position of the reference point for this track.
+     * @return The y position of the reference point for this track.
+     */
     public double getReferencePointY()
     {
         return _refPoint[1];
     }
+    /**
+     * Return the z position of the reference point for this track.
+     * @return The z position of the reference point for this track.
+     */
     public double getReferencePointZ()
     {
         return _refPoint[2];
     }
+    /**
+     * Is the reference point for this track the DCA? This needs clarification
+     * @return true if the reference point is the dca.
+     */
+    // TODO clarify what this means.
     public boolean isReferencePointPCA()
     {
         return false;
     }
+    /**
+     * The cartesian momentum for this track (px, py, pz)
+     * @return The momentum of this track.
+     */
     public double[] getMomentum()
     {
         return _momentum;
     }
+    /**
+     * The x component of the momentum of this track.
+     * @return The x component of the momentum of this track.
+     */
     public double getPX()
     {
         return _momentum[0];
     }
+    /**
+     * The y component of the momentum of this track.
+     * @return The y component of the momentum of this track.
+     */
     public double getPY()
     {
         return _momentum[1];
     }
+    /**
+     * The z component of the momentum of this track.
+     * @return The z component of the momentum of this track.
+     */
     public double getPZ()
     {
         return _momentum[2];
     }
     
+    /**
+     * Return whether the track was successfully fit.
+     * @return true if this track was successfully fir.
+     */
     public boolean fitSuccess()
     {
         return _fitSuccess;
     }
+    /**
+     * Return an individual track parameter
+     *@see Track.Parameter
+     * @param i the index of the track parameter desired
+     * @return The value of the ith track parameter 
+     */
     public double getTrackParameter(int i)
     {
         return _parameters[i];
     }
+    /**
+     * Return the track parameters.
+     *@see Track.Parameter
+     * @return The track parameters.
+     */
     public double[] getTrackParameters()
     {
         return _parameters;
     }
+    /**
+     * Return an individual element of the track covariance matrix.
+     * @param i the ith element of the covariance matrix(i,j)
+     * @param j the jth element of the covariance matrix(i,j)
+     * @return The covariance matrix element at (i,j).
+     */
     public double getErrorMatrixElement(int i, int j)
     {
         return _covMatrix[i][j];
     }
+    /**
+     *Return the track covariance matrix.
+     * @return the track covariance matrix as an array.
+     */
     public double[][] getErrorMatrix()
     {
         return _covMatrix;
     }
+    /**
+     * The track fit chi-squared.
+     * @return The chi-squared of the track fit.
+     */
     public double getChi2()
     {
         return _chi2;
     }
+    /**
+     * The number of degrees of freedom in the track fit.
+     * @return The number of degrees of freedom in the track fit.
+     */
     public int getNDF()
     {
         return _ndf;
     }
     
+    /**
+     * The ionization associated with this track.
+     * @return the energy deposited along this track in GeV.
+     */
     public double getdEdx()
     {
         return _dEdx;
     }
+    /**
+     * The uncertainty on the ionization associated with this track.
+     * @return The uncertainty on the ionization associated with this track.
+     */
     public double getdEdxError()
     {
         return _dEdxErr;
     }
+    /**
+     * The innermost radius of a hit on this track. For values smaller than this
+     * the track must be, or has been, extrapolated. 
+     * @return The innermost radius of a hit on this track.
+     */
+    // TODO verify that this is in global coordinates, not wrt reference point.
     public double getRadiusOfInnermostHit()
     {
         return _innermostHitRadius;
     }
+    /**
+     * The ids of the subdetectors hit by this track. Not yet defined.
+     * @return a list of integers representing the subdetector ids hit by this track.
+     */
+    // TODO establish what this means.
     public int[] getSubdetectorHitNumbers()
     {
         return _subdetId;
     }
+    /**
+     * If this is a composite track, return a list of constituent tracks.
+     * @return the list of individual tracks of which this track is  composed.
+     */
     public List<Track> getTracks()
     {
         return _tracks;
     }
+    /**
+     * Return the list of tracker hits of which this track is composed.
+     * @return the list of hits on this track.
+     */
     public List<TrackerHit> getTrackerHits()
     {
         return _hits;
     }
+    /**
+     * Return the type of this track. Not yet defined.
+     * @return an integer representation of the type of this track.
+     */
+    // TODO define what this means.
     public int getType()
     {
         return _type;
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