diff -u -r1.5 -r1.6
--- SimpleMipQualityDecision.java	11 Oct 2008 01:00:34 -0000	1.5
+++ SimpleMipQualityDecision.java	17 Oct 2008 00:32:45 -0000	1.6
@@ -20,7 +20,7 @@

 public class SimpleMipQualityDecision 
 {
     private int count;

-

+    boolean removeUpperHit = true;

     public SimpleMipQualityDecision() {
 	// No user-settable options for now
     }

@@ -53,7 +53,11 @@

                     exam.put(layerInt,hits);
                 }
                 hits.add(hit);

-                if(exam.get(layerInt).size() > 2){  isolayer.remove(layerInt); }

+                if(removeUpperHit){
+                    if(exam.get(layerInt).size() > 1){  isolayer.remove(layerInt); }
+                }else{
+                    if(exam.get(layerInt).size() > 2){  isolayer.remove(layerInt); }
+                }

             }
 	}