diff -u -r1.2 -r1.3
--- ImageMapperII.java	25 Feb 2011 06:37:36 -0000	1.2
+++ ImageMapperII.java	7 Mar 2011 23:07:15 -0000	1.3
@@ -15,13 +15,15 @@

 
 public class ImageMapperII {
 	

-	private static final int INTERESTING_CUT = 1;
-	private static final boolean LEVELLING_ON = true;

+	private static final int INTERESTING_CUT = 20;
+	private static final boolean LEVELLING_ON = false;

 	
 	private static final double pixWidth = 45.0;
 	private static final double pixHeight = 33.0;
 	

-	private static final double mmPerPixel = .00810282; // high res

+//	private static final double mmPerPixel = .00810282; // high res
+	private static final double mmPerPixel = .00818493; // high res
+

 	
 	private double imageWidth;
 	private double imageHeight;

@@ -36,6 +38,8 @@

 	private BufferedWriter output;
 	
 	private int debug;

+	private int dPrintCounter=1;
+	private static final int dPrint=0;

 	
 	public ImageMapperII(String imageFile, String outFile, int debugFlag) throws IOException{
 		//initialize variables, say hello

@@ -215,10 +219,25 @@

 			}
 			
 		}

-

+		
+		

 		// if there are enough non-white pixels, it's interesting

-		if(nColorPix > INTERESTING_CUT)

+		if(nColorPix > INTERESTING_CUT){
+			if(debug==1){
+				if(dPrint==1){
+					try {
+					    File outputfile = new File("/Users/maxinion/Documents/Work/CDMS/imagingII/out2-28/broken/b"+dPrintCounter+".jpg");
+					    ImageIO.write(sub, "jpg", outputfile);
+						System.out.println("There are " + nColorPix + " interesting pixels in image " +dPrintCounter);
+					    dPrintCounter++;
+					} catch (IOException e) {
+					    System.out.println("error writing out broken images!");
+					}
+				}
+			}

 			return true;

+			
+		}

 		return false;
 	}
 }

diff -u -r1.2 -r1.3
--- ImageMapperIIRun.java	25 Feb 2011 06:37:36 -0000	1.2
+++ ImageMapperIIRun.java	7 Mar 2011 23:07:15 -0000	1.3
@@ -11,7 +11,7 @@

 
 		try {
 			ImageMapperII mapper = new ImageMapperII("/Users/maxinion/Documents/Work/CDMS/imagingII/qets2-hires.jpg",

-					"/Users/maxinion/Documents/Work/CDMS/imagingII/out2-24/qets2-out.csv",1);

+					"/Users/maxinion/Documents/Work/CDMS/imagingII/out2-28/qets2-full-out.csv",1);

 			mapper.doAll();
 		} catch (IOException e) {
 			e.printStackTrace();