diff -u -r1.3 -r1.4
--- HPSSVTSensorSetup.java	15 Feb 2012 20:03:16 -0000	1.3
+++ HPSSVTSensorSetup.java	16 Feb 2012 23:23:27 -0000	1.4
@@ -29,12 +29,12 @@

  *
  * @author Mathew Graham <[log in to unmask]>
  * @author Omar Moreno   <[log in to unmask]>

- * @version $Id: HPSSVTSensorSetup.java,v 1.3 2012/02/15 20:03:16 jeremy Exp $

+ * @version $Id: HPSSVTSensorSetup.java,v 1.4 2012/02/16 23:23:27 jeremy Exp $

  */
 public class HPSSVTSensorSetup extends Driver {
     
     String subdetectorName = "Tracker";

-    boolean debug = false;

+    boolean debug = true;

     
     // Sensor Characteristics
     private double readoutStripPitch = 0.060;    // micro-m

@@ -82,8 +82,7 @@

         sensors.addAll(detectorElement.findDescendants(SiSensor.class));
         if(debug)
             System.err.println(this.getClass().getName() + ": Added " + sensors.size() + " sensors");

-        
-        

+                

         // Configure the sensors
         configureSensors(sensors);
     }

@@ -96,68 +95,52 @@

     private void configureSensors(Set<SiSensor> sensors)
     {
         // Loop through all the sensors in the set

-        for(SiSensor sensor : sensors){
-            

+        for(SiSensor sensor : sensors)
+        {
+            System.out.println("setting up sensor " + sensor.getName());

             // Set the sensor Id
             //setSensorId(sensor);
         

-            Box sensorSolid 
-               = (Box) sensor.getGeometry().getLogicalVolume().getSolid();

+            Box sensorSolid = (Box) sensor.getGeometry().getLogicalVolume().getSolid();

-            Polygon3D pSide 
-               = sensorSolid.getFacesNormalTo(
-                                    new BasicHep3Vector(0, 0, 1)).get(0);
-            Polygon3D nSide = sensorSolid.getFacesNormalTo(
-                                    new BasicHep3Vector(0, 0, -1)).get(0);

+            Polygon3D pSide = sensorSolid.getFacesNormalTo(new BasicHep3Vector(0, 0, 1)).get(0);
+            Polygon3D nSide = sensorSolid.getFacesNormalTo(new BasicHep3Vector(0, 0, -1)).get(0);

             
             // p side collects holes
             sensor.setBiasSurface(ChargeCarrier.HOLE, pSide);
             // n side collects electrons
             sensor.setBiasSurface(ChargeCarrier.ELECTRON, nSide);
             

-            // Translate to the outside of the box in order to setup 
-            // electrodes
-            ITranslation3D electrodesPosition 
-               = new Translation3D(VecOp.mult(-pSide.getDistance(), 
-                                               pSide.getNormal()));
-            
-            // Align the strips with the edge of the sensor
-            IRotation3D electrodesRotation 
-               = new RotationPassiveXYZ(0, 0, Math.PI/2);
-            Transform3D electrodesTransform 
-               = new Transform3D(electrodesPosition, electrodesRotation);
-            
-            // Set the number of readout and sense electrodes
-            SiStrips readoutElectrodes 
-               = new SiStrips(ChargeCarrier.HOLE, readoutStripPitch, sensor, 
-                              electrodesTransform);
-            SiStrips senseElectrodes 
-               = new SiStrips(ChargeCarrier.HOLE, senseStripPitch,
-                             (readoutElectrodes.getNCells()*2-1), 
-                              sensor, electrodesTransform);

+            // Translate to the outside of the box in order to setup electrodes.
+            ITranslation3D electrodesPosition = new Translation3D(VecOp.mult(-pSide.getDistance(), pSide.getNormal()));
+            //System.out.println("electrodes position...");
+            //System.out.println(electrodesPosition.toString());
+            
+            // Align the strips with the edge of the sensor           
+            IRotation3D electrodesRotation = new RotationPassiveXYZ(0, 0, Math.PI/2); // Is this the right rotation???
+            //IRotation3D electrodesRotation = new RotationPassiveXYZ(0, 0, 0); // Is this the right rotation???
+            Transform3D electrodesTransform = new Transform3D(electrodesPosition, electrodesRotation);
+            
+            // Set the number of readout and sense electrodes.
+            SiStrips readoutElectrodes = new SiStrips(ChargeCarrier.HOLE, readoutStripPitch, sensor, electrodesTransform);
+            SiStrips senseElectrodes = new SiStrips(ChargeCarrier.HOLE, senseStripPitch, (readoutElectrodes.getNCells()*2-1), sensor, electrodesTransform);

             
             System.out.println(this.getClass().getName() + ": The number of readout strips are " + readoutElectrodes.getNCells());
             System.out.println(this.getClass().getName() + ": The number of sense strips are " + senseElectrodes.getNCells());
 
             // Set the strip capacitance

-            readoutElectrodes.setCapacitanceIntercept(
-                                readoutStripCapacitanceIntercept);
-            readoutElectrodes.setCapacitanceSlope(
-                                readoutStripCapacitanceSlope);
-            senseElectrodes.setCapacitanceIntercept(
-                                senseStripCapacitanceIntercept);
-            senseElectrodes.setCapacitanceSlope(
-                                senseStripCapacitanceSlope); 

+            readoutElectrodes.setCapacitanceIntercept(readoutStripCapacitanceIntercept);
+            readoutElectrodes.setCapacitanceSlope(readoutStripCapacitanceSlope);
+            senseElectrodes.setCapacitanceIntercept(senseStripCapacitanceIntercept);            
+            senseElectrodes.setCapacitanceSlope(senseStripCapacitanceSlope); 

             
             // Set sense and readout electrodes
             sensor.setSenseElectrodes(senseElectrodes);
             sensor.setReadoutElectrodes(readoutElectrodes);
             
             // Set the charge transfer efficiency

-            double[][] transferEfficiencies 
-               = {{readoutTransferEfficiency, senseTransferEfficiency}};
-            sensor.setTransferEfficiencies(ChargeCarrier.HOLE, 
-                                       new BasicMatrix(transferEfficiencies));

+            double[][] transferEfficiencies = {{readoutTransferEfficiency, senseTransferEfficiency}};
+            sensor.setTransferEfficiencies(ChargeCarrier.HOLE, new BasicMatrix(transferEfficiencies));

         }
     }