It seems to need a schema that is neither in the directory nor in the link Sho provided. Note that this schema does exist, but in the directory "v00-00/lcdd/v03-02-00_pre1/schemas/lcdd/1.0/". Also, just to check that this is not the issue, do I have an old version of SLIC that and the schema setup has changed? I am using SLIC version 3.1.1 and GEANT4 version 9.6.1.It is definitely recognizing the correct path and the schemas from the link Sho provided are all there. However it gives the error:It gives as outputHello all,It still seems to be having trouble. I had the scripts I am passing to the batch system perform the following commands as a diagnostic:
echo $GDML_SCHEMA_DIR
ls $GDML_SCHEMA_DIR
/net/home/mccaky/hps/SimDist/v00-00/geant4/9.6.p01/source/persistency/gdml/schema/
gdml_core.xsd
gdml_define.xsd
gdml_extensions.xsd
gdml_materials.xsd
gdml_parameterised.xsd
gdml_replicas.xsd
gdml_solids.xsd
gdml.xsd
unable to connect socket for URL 'http://www.lcsim.org/schemas/lcdd/1.0/lcdd.xsd'
Thanks,
KyleOn Thu, Nov 7, 2013 at 12:46 AM, Graf, Norman A. <[log in to unmask]> wrote:
Thanks Sho.
Kyle, can you let us know whether this resolves your batch
issue?
Sent: Wednesday, November 06, 2013 9:39 PM
To: Graf, Norman A.
Cc: McCormick, Jeremy I.; Kyle McCarty; hps-software
Subject: RE: Running SLIC Locally
Done. I noticed the GDML schemas are already part of the ilcinstall tree,
so it's actually a one-liner assuming you're using ilcinstall, but I kept
the existing instructions and you can decide whether to keep them:
https://confluence.slac.stanford.edu/display/ilc/How+can+I+make+SLIC+look+for+XML+schemas+in+a+local+directory
On Wed, 6 Nov 2013, Graf, Norman A. wrote:
> Hello Sho,
> Thanks for looking into this. Feel free to update the
> confluence page.
> Norman
>
> ________________________________________
> From: Sho Uemura [[log in to unmask]]
> Sent: Wednesday, November 06, 2013 6:46 PM
> To: McCormick, Jeremy I.
> Cc: Kyle McCarty; Graf, Norman A.; hps-software
> Subject: Re: Running SLIC Locally
>
> The Confluence instructions seem to be out of date: ilcinstall pulls in
> and installs the LCDD schemas locally, so there's no need to download
> those, but you do need to download the GDML schemas (I imagine it would
> make sense for ilcinstall to do this as well, but it doesn't seem to).
>
> So download all the .xsd files under
> http://www.lcsim.org/schemas/gdml/1.0/ into a local directory, then set
> GDML_SCHEMA_DIR to point to this directory. This is all I need to do to
> get slic running behind the JLab firewall.
>
> On Tue, 5 Nov 2013, McCormick, Jeremy I. wrote:
>
>> Alright I will double check that it is still working in my local copy...
>>
>> On Nov 5, 2013, at 11:16 AM, "Kyle McCarty" <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>>
>> Hello Jeremy,
>>
>> Running the command " find /net/data/taro/kylem/schema/ -name "*.xsd" " gives
>>
>> /net/data/taro/kylem/schema/lcdd_iddict.xsd
>> /net/data/taro/kylem/schema/lcdd_fields.xsd
>> /net/data/taro/kylem/schema/lcdd_limits.xsd
>> /net/data/taro/kylem/schema/lcdd_display.xsd
>> /net/data/taro/kylem/schema/lcdd_sensitive_detectors.xsd
>> /net/data/taro/kylem/schema/lcdd.xsd
>> /net/data/taro/kylem/schema/lcdd_header.xsd
>> /net/data/taro/kylem/schema/lcdd_regions.xsd
>>
>> I believe that batch system can access the folder. It writes the output log files (like the ones I sent previously) to the same driver (though a different folder), so it does seem to be able to read/write to said drive. Also, the schema folder has read/execute permissions for all user groups, so there shouldn't be any permission issues. The schema files themselves only had read access for all user groups. I gave execute access to all user groups for these as well, but this does not stop the errors. I'm fairly certain that the batch system is running the processes as me anyway, though, since it can write to an output folder which only I have write access for.
>>
>> - Kyle
>>
>>
>> On Tue, Nov 5, 2013 at 1:31 PM, McCormick, Jeremy I. <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>> Hi, Kyle.
>>
>> Sorry you?re having troubles with this...
>>
>> Can you execute this command to show the contents of your schema dir?
>>
>> find /net/data/taro/kylem/schema/ -name ?*.xsd?
>>
>> Please paste that command output into an email back to us.
>>
>> Stupid question: Is that directory accessible to the batch system?
>>
>> Thanks.
>>
>> On Nov 5, 2013, at 8:50 AM, Kyle McCarty <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>>
>> Hello Norman,
>>
>> The batch system we use is OpenPBS and works by submitting a shell script to the batch system, which then distributes the process to a node. I have attached a sample script that gets passed to the batch system as well as the stdout and stderr that came from running it. The variable GDML_SCHEMA_DIR correctly resolves as "/net/data/taro/kylem/schema/" which contains all of the XSD files.
>>
>> Thanks,
>>
>> Kyle
>>
>>
>> On Mon, Nov 4, 2013 at 1:45 PM, Graf, Norman A. <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>> Hello Kyle,
>> As far as I know this should work. Can you provide more information
>> on exactly how you are running slic, where the schemas are located
>> locally and whether GDML_SCHEMA_DIR resolves correctly?
>> Norman
>>
>> From: Kyle McCarty [mailto:[log in to unmask]<mailto:[log in to unmask]>]
>> Sent: Monday, November 04, 2013 9:10 AM
>> To: Graf, Norman A.
>> Cc: hps-software
>> Subject: Re: Running SLIC Locally
>>
>> Hello Norman,
>> I tried your suggestion and I am still getting a similar problem. It now gives the error:
>>
>> fatal error: systemId: line: 0 column: 0
>> unable to connect socket for URL 'http://www.lcsim.org/schemas/gdml/1.0/gdml.xsd'
>> fatal error: systemId: file:///net/home/mccaky/data/schema//lcdd.xsd line: 18 column: 80
>> fatal error during schema scan
>>
>> -------- EEEE ------- G4Exception-START -------- EEEE -------
>> *** G4Exception :
>> issued by :
>> Failed to get the world volume.
>> *** Fatal Exception *** core dump ***
>> -------- EEEE -------- G4Exception-END --------- EEEE -------
>>
>>
>> *** G4Exception: Aborting execution ***
>> The file "lcdd.xsd" does exist at the indicated directory, so it seems that SLIC is having trouble finding it there, for some reason.
>> - Kyle
>>
>> On Mon, Nov 4, 2013 at 11:53 AM, Graf, Norman A. <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>> Good Morning Kyle,
>> Have you tried the following?
>>
>> https://confluence.slac.stanford.edu/display/ilc/How+can+I+make+SLIC+look+for+XML+schemas+in+a+local+directory
>>
>> Norman
>>
>> From: [log in to unmask]<mailto:[log in to unmask]> [mailto:[log in to unmask]<mailto:[log in to unmask]>] On Behalf Of Kyle McCarty
>> Sent: Monday, November 04, 2013 8:51 AM
>> To: hps-software
>> Subject: Running SLIC Locally
>>
>> Hello hps-software,
>> I am attempting to run SLIC on a computing cluster, but am running into trouble. The individual nodes in the cluster do not have access to the internet, and this renders SLIC unable to access a file "http://www.lcsim.org/schemas/lcdd/1.0/lcdd.xsd" and subsequently terminate. Is there a means by which I can get SLIC to not require an internet connection to run?
>> Thanks,
>>
>> Kyle
>>
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>>
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