Commit in projects/lcsim/trunk on MAIN
site/TODO+4-42858 -> 2859
    /pom.xml-32858 -> 2859
    /rebuild.sh+2-12858 -> 2859
site/src/site/apt/features.apt+4-42858 -> 2859
                 /forum.apt+9added 2859
                 /grid.apt+6-72858 -> 2859
                 /intro.apt+8-52858 -> 2859
                 /links.apt+14added 2859
                 /software.apt+23added 2859
                 /wiki.apt+19added 2859
site/src/site/site.xml+15-42858 -> 2859
site-parent/pom.xml+11-132858 -> 2859
+115-41
4 added + 8 modified, total 12 files
more website updates and additions

projects/lcsim/trunk/site
TODO 2858 -> 2859
--- projects/lcsim/trunk/site/TODO	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site/TODO	2013-12-16 22:53:07 UTC (rev 2859)
@@ -16,6 +16,10 @@
 
 X explanation of project module structure 
 
+X links page, such as ILC Confluence docs for further instruction and information
+
+X description and links of other associated applications such as SLIC, PandoraPFA, slicPandora, LCFIVertexing (ick)
+
 software license
 
 news
@@ -28,9 +32,5 @@
 
 Netbeans project setup instructions
 
-links page, such as ILC Confluence docs for further instruction and information
-
-description and links of other associated applications such as SLIC, PandoraPFA, slicPandora, LCFIVertexing (ick)
-
 JAS instructions such as explanation of ~/.JAS3/extensions, how to install, how to run drivers, basic event display usage (can point to wiki),
 basic usage of event browser (also wiki) 

projects/lcsim/trunk/site
pom.xml 2858 -> 2859
--- projects/lcsim/trunk/site/pom.xml	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site/pom.xml	2013-12-16 22:53:07 UTC (rev 2859)
@@ -78,11 +78,9 @@
                             <report>index</report>
                             <report>issue-tracking</report>
                             <report>mailing-list</report>
-<!--
                             <report>modules</report>
                             <report>plugin-management</report>
                             <report>plugins</report>
--->
                             <report>project-team</report>
                         </reports>
                     </reportSet>
@@ -138,7 +136,6 @@
                     <linkJavadoc>true</linkJavadoc>
                 </configuration>
             </plugin>
-
         </plugins>
     </reporting>
 </project>

projects/lcsim/trunk/site
rebuild.sh 2858 -> 2859
--- projects/lcsim/trunk/site/rebuild.sh	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site/rebuild.sh	2013-12-16 22:53:07 UTC (rev 2859)
@@ -2,4 +2,5 @@
 rm -rf /scratch/staging/*
 #mvn site:site site:stage --non-recursive -DstagingDirectory=/scratch/staging/site/
 #mvn site:site site:deploy
-mvn site:site site:stage -Djava.awt.headless=true -DstagingDirectory=/work/scratch/site
+#mvn site:site site:stage -Djava.awt.headless=true -DstagingDirectory=/work/scratch/site
+mvn site:site site:stage -Djava.awt.headless=true -DstagingDirectory=/scratch/staging/site

projects/lcsim/trunk/site/src/site/apt
features.apt 2858 -> 2859
--- projects/lcsim/trunk/site/src/site/apt/features.apt	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site/src/site/apt/features.apt	2013-12-16 22:53:07 UTC (rev 2859)
@@ -13,8 +13,10 @@
     * Histogramming and Plotting using AIDA.
     
     * Calorimeter hit clustering.
+
+    * Hadronic jet finding.
     
-    * Track finding and fitting with Seedtracker.
+    * Track finding and fitting with Seedtracker and TRF.
     
     * Detailed hierarchical detector and geometry description framework.
     
@@ -22,10 +24,8 @@
     
     * Math utility library.
     
-    * Vertexing with Billoir.
+    * Vertex finding.
     
-    * TRF track reconstruction framework.
-    
     * HepRep output for binding to the Wired event display.
     
     * Plugin for JAS3 including an event browser, event display and binding to the record loop.

projects/lcsim/trunk/site/src/site/apt
forum.apt added at 2859
--- projects/lcsim/trunk/site/src/site/apt/forum.apt	                        (rev 0)
+++ projects/lcsim/trunk/site/src/site/apt/forum.apt	2013-12-16 22:53:07 UTC (rev 2859)
@@ -0,0 +1,9 @@
+    ---
+LCSim - Features
+    ---
+
+Forum
+
+    The {{{http://forum.linearcollider.org}linearcollider.org forum}} has an {{{http://forum.linearcollider.org/index.php?t=threadt&frm_id=41}org.lcsim section}} 
+    where any questions or comments regarding the framework can be posted.   Anyone may {{{http://forum.linearcollider.org/index.php?t=pre_reg}register}}
+    to create posts, and you do not need to login just to view the threads.

projects/lcsim/trunk/site/src/site/apt
grid.apt 2858 -> 2859
--- projects/lcsim/trunk/site/src/site/apt/grid.apt	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site/src/site/apt/grid.apt	2013-12-16 22:53:07 UTC (rev 2859)
@@ -8,10 +8,9 @@
 
 * ILCDIRAC
 
-    The recommended way to run jobs with the application is using the {{{https://twiki.cern.ch/twiki/bin/view/CLIC/DiracUsage}ILCDIRAC}}
-    client, which wraps a suite of reconstruction and analysis tools with a structured Python API. 
+    The recommended way to run batch jobs with the application is using the {{{https://twiki.cern.ch/twiki/bin/view/CLIC/DiracUsage}ILCDIRAC}}
+    client, which wraps a suite of reconstruction and analysis tools with a structured Python API.  
 
-
     The {{{https://twiki.cern.ch/twiki/bin/view/CLIC/DiracForUsers}DIRAC for Users}} guide shows how to configure jobs under
     the "LCSIM" section.
 
@@ -20,9 +19,9 @@
 
 * Sample Script
 
-    The LCSim application is activated with the {{{http://lcd-data.web.cern.ch/lcd-data/doc/ilcdiracdoc/ILCDIRAC.Workflow.Modules.LCSIMAnalysis-module.html}LCSIMAnalysis module}}.
+    The LCSim application can be run in a grid job with the {{{http://lcd-data.web.cern.ch/lcd-data/doc/ilcdiracdoc/ILCDIRAC.Interfaces.API.NewInterface.Applications.LCSIM-class.html}LCSIM class}}.
 
-    Below is a sample of how to use this class, which can be used as a starting point for writing your own scripts:
+    Below is a script showing how to use it:
 
 +--
 #!/usr/bin/env python
@@ -85,5 +84,5 @@
 job.submit ( dirac )
 +--
 
-    This is an example which only prints out the number of each event.  The DIRAC Wiki contains all the information for setting
-    up and configuring your actual analysis jobs in Python.
+    The above is an example only, which prints out the number of each event.  The DIRAC Wiki contains all the information for setting
+    up and configuring your actual analysis jobs in Python, including managing the input and output of data files from the job.

projects/lcsim/trunk/site/src/site/apt
intro.apt 2858 -> 2859
--- projects/lcsim/trunk/site/src/site/apt/intro.apt	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site/src/site/apt/intro.apt	2013-12-16 22:53:07 UTC (rev 2859)
@@ -5,8 +5,11 @@
 Introduction
 
     LCSim, standing for "Linear Collider Simulation", is a Java-based framework for physics
-    event reconstruction and analysis.  It uses the {{{lcio.desy.de}LCIO}} event model,
-    the {{{aida.freehep.org}AIDA}} histogramming and plotting API, and also makes use of
-    the {{{jas.freehep.org}JAS}} (or Java Analysis Studio) GUI which includes the
-    {{{wired.freehep.org}Wired Event Display}}.  LCSim also makes extensive use of the 
-    {{{java.freehep.org}FreeHEP Java Libraries}}.
\ No newline at end of file
+    event reconstruction and analysis.  It was developed primarily for Linear Collider Detector studies
+    and is currently used by {{{./users.html}several HEP groups and collaborations}}.  
+    The software has an extensive {{{./features.html}list of features}}.  
+
+    LCSim uses the {{{lcio.desy.de}LCIO}} event model, the {{{aida.freehep.org}AIDA}} histogramming and plotting API, 
+    and also makes use of the {{{jas.freehep.org}JAS}} (or Java Analysis Studio) GUI which includes the
+    {{{wired.freehep.org}Wired Event Display}}.  LCSim also makes extensive use of the {{{java.freehep.org}FreeHEP Java Libraries}}
+    for its core functionality.

projects/lcsim/trunk/site/src/site/apt
links.apt added at 2859
--- projects/lcsim/trunk/site/src/site/apt/links.apt	                        (rev 0)
+++ projects/lcsim/trunk/site/src/site/apt/links.apt	2013-12-16 22:53:07 UTC (rev 2859)
@@ -0,0 +1,14 @@
+    ---
+LCSim - Links
+    ---
+
+Links
+
+* Project and Groups
+
+    * {{{http://www.linearcollider.org/}LinearCollider.org}}
+
+    * {{{http://www-zeuthen.desy.de/linear_collider/}ECFA LC Simulation}}
+
+    * {{{http://acfahep.kek.jp/subg/sim/}ACFA LC Simulation}}
+

projects/lcsim/trunk/site/src/site/apt
software.apt added at 2859
--- projects/lcsim/trunk/site/src/site/apt/software.apt	                        (rev 0)
+++ projects/lcsim/trunk/site/src/site/apt/software.apt	2013-12-16 22:53:07 UTC (rev 2859)
@@ -0,0 +1,23 @@
+    ---
+LCSim - Software
+    ---
+
+Software
+
+    There are several other related pieces of software that interface with LCSim, mostly via shared data formats.
+
+    These include:
+
+    * {{{http://lcio.desy.de/}Linear Collider IO (LCIO)}} - API and binary implementation for sharing physics event data
+
+    * {{{https://confluence.slac.stanford.edu/display/ilc/SLIC}Simulator for the Linear Collider (SLIC)}} - detector simulation with Geant4
+
+    * {{{https://confluence.slac.stanford.edu/display/ilc/LCDD}Linear Collider Detector Description (LCDD)}} - detector description XML format
+
+    * {{{http://gdml.web.cern.ch/GDML/}Geometry Description Markup Language (GDML}} - geometry description format
+
+    * {{{https://confluence.slac.stanford.edu/display/ilc/New+Build+Instructions+for+PandoraPFANew}PandoraPFA}} - particle flow algorithm
+
+    * {{{http://ilcsoft.desy.de/portal/software_packages/ilcinstall/}ILCInstall}} - ILC software installation framework
+
+    * {{{https://twiki.cern.ch/twiki/bin/view/CLIC/DiracUsage}ILCDIRAC}} - grid toolkit

projects/lcsim/trunk/site/src/site/apt
wiki.apt added at 2859
--- projects/lcsim/trunk/site/src/site/apt/wiki.apt	                        (rev 0)
+++ projects/lcsim/trunk/site/src/site/apt/wiki.apt	2013-12-16 22:53:07 UTC (rev 2859)
@@ -0,0 +1,19 @@
+    ---
+LCSim - Wiki
+    ---
+
+Wiki
+
+    The {{{https://confluence.slac.stanford.edu/display/ilc/Home}ILC Confluence Wiki}} is the primary source of user documentation for 
+    the software.
+
+* Tutorials 
+
+    The {{{https://confluence.slac.stanford.edu/display/ilc/lcsim+Getting+Started}lcsim Getting Started page}} is a good entry point
+    for new users.
+
+* Data Samples
+
+    There is an extensive set of {{{https://confluence.slac.stanford.edu/display/ilc/Data+Samples}data samples}} available that can be
+    used as input for reconstruction and analysis jobs.  These will primarily be of interest to those working on Linear Collider detectors.
+

projects/lcsim/trunk/site/src/site
site.xml 2858 -> 2859
--- projects/lcsim/trunk/site/src/site/site.xml	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site/src/site/site.xml	2013-12-16 22:53:07 UTC (rev 2859)
@@ -5,12 +5,18 @@
 
         <menu name="General">
             <item name="Home" href="index.html"/>
-            <item name="Site Map" href="sitemap.html"/>
             <item name="Introduction" href="intro.html"/>
+<!--            
+            <item name="Modules" href="modules.html"/>
+-->            
             <item name="Features" href="features.html"/>
             <item name="Users" href="users.html"/>
             <item name="Team" href="team-list.html"/>
             <item name="Mailing List" href="mail-lists.html"/>
+            <item name="Forum" href="forum.html"/>
+            <item name="Wiki" href="wiki.html"/>
+            <item name="Links" href="links.html"/>
+            <item name="Related Software" href="software.html"/>
         </menu>
         
         <menu name="Source Documentation">
@@ -19,9 +25,8 @@
             <item name="Source Xref" href="xref/index.html"/>
             <item name="Test Source Xref" href="xref-test/index.html"/>
         </menu>
- 
-        <menu name="Project Information">
-            <item name="Project Dependencies" href="dependency-convergence.html"/>
+         
+        <menu name="Issue Tracking">
             <item name="Bugs and Issues" href="issue-tracking.html"/>
             <item name="Jira Report" href="jira-report.html"/>
         </menu>
@@ -40,6 +45,12 @@
             <item name="Continuous Integration" href="integration.html"/>
             <item name="Surefire Test Report" href="surefire-report.html"/>
         </menu>
+        
+        <menu name="Project Information">
+            <item name="Project Dependencies" href="dependency-convergence.html"/>
+            <item name="Plugin Management" href="plugin-management.html"/>
+            <item name="Plugins" href="plugins.html"/>
+        </menu>
 
     </body> 
 

projects/lcsim/trunk/site-parent
pom.xml 2858 -> 2859
--- projects/lcsim/trunk/site-parent/pom.xml	2013-12-16 20:07:45 UTC (rev 2858)
+++ projects/lcsim/trunk/site-parent/pom.xml	2013-12-16 22:53:07 UTC (rev 2859)
@@ -59,9 +59,7 @@
             </roles>
             <timezone>-8</timezone>
         </developer>
-    </developers>
-    <contributors>
-        <contributor>
+        <developer>
             <name>Rich Partridge</name>
             <email>[log in to unmask]</email>
             <organization>SLAC</organization>
@@ -70,8 +68,8 @@
                 <role>developer</role>
             </roles>
             <timezone>-8</timezone>
-        </contributor>
-        <contributor>
+        </developer>
+        <developer>
             <name>Tim Nelson</name>
             <email>[log in to unmask]</email>
             <organization>SLAC</organization>
@@ -80,8 +78,8 @@
                 <role>developer</role>
             </roles>
             <timezone>-8</timezone>
-        </contributor>
-        <contributor>
+        </developer>
+        <developer>
             <name>Pelle Hansson</name>
             <email>[log in to unmask]</email>
             <organization>SLAC</organization>
@@ -90,8 +88,8 @@
                 <role>developer</role>
             </roles>
             <timezone>-8</timezone>
-        </contributor>
-        <contributor>
+        </developer>
+        <developer>
             <name>Jan Strube</name>
             <email>[log in to unmask]</email>
             <organization>CERN</organization>
@@ -100,8 +98,8 @@
                 <role>developer</role>
             </roles>
             <timezone>1</timezone>
-        </contributor>
-        <contributor>
+        </developer>
+        <developer>
             <name>Christian Grefe</name>
             <email>[log in to unmask]</email>
             <organization>CERN</organization>
@@ -110,8 +108,8 @@
                 <role>developer</role>
             </roles>
             <timezone>1</timezone>
-        </contributor>
-    </contributors>
+        </developer>
+    </developers>
     <organization>
         <name>Linear Collider Detector (LCD)</name>
         <url>http://www.lcsim.org</url>
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