--- java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterIC.java	2014-06-04 21:01:15 UTC (rev 668)
+++ java/trunk/ecal-recon/src/main/java/org/hps/recon/ecal/EcalClusterIC.java	2014-06-04 21:44:06 UTC (rev 669)
@@ -18,7 +18,6 @@

 import org.lcsim.geometry.subdetector.HPSEcal3.NeighborMap;
 import org.lcsim.lcio.LCIOConstants;
 import org.lcsim.util.Driver;

-import org.hps.recon.ecal.HPSEcalClusterIC;

 
 
 /**

@@ -189,7 +188,11 @@

     public void createClusters(EventHeader event) throws IOException {
     	
     	// Create a list to store the event hits in.

-        List<CalorimeterHit> hitList = event.get(CalorimeterHit.class, ecalCollectionName);

+        List<CalorimeterHit> hitList = new ArrayList<CalorimeterHit>();
+        List<CalorimeterHit> baseList = event.get(CalorimeterHit.class, ecalCollectionName);
+        for(CalorimeterHit r : baseList) {
+        	hitList.add(r);
+        }

         
         // Create a list to store the newly created clusters in.
         ArrayList<HPSEcalClusterIC> clusterList = new ArrayList<HPSEcalClusterIC>();

@@ -206,7 +209,7 @@

         for(int index = hitList.size() - 1; index >= 0; index--) {
         	// If the hit is below threshold or outside of time window, kill it.
         	if((hitList.get(index).getCorrectedEnergy() < hitEnergyThreshold)||

-        			(timeCut && (hitList.get(index).getTime() < minTime || hitList.get(index).getTime() > minTime + timeWindow))) {

+        			(timeCut && (hitList.get(index).getTime() < minTime || hitList.get(index).getTime() > (minTime + timeWindow)))) {

         		rejectedHitList.add(hitList.get(index));
         		hitList.remove(index);
         	}

@@ -464,7 +467,7 @@

         	eventNum++;
         	
         	// Write the event header.

- //       	writeHits.append(String.format("Event\t%d%n", eventNum));

+//        	writeHits.append(String.format("Event\t%d%n", eventNum));

         	
         	// Write the calorimeter hits that passed the energy cut.
             for (CalorimeterHit n : hitList) {

@@ -519,10 +522,17 @@

                             cluster.addSharedHit(entry4.getKey());
                         }
                     }

+                    for(CalorimeterHit q : rejectedHitList)
+                    {// This does not output in correct event display format, just for de-bugging
+//                    	writeHits.append("Rejected"+q.getIdentifierFieldValue("ix")+"\t"+q.getIdentifierFieldValue("iy")+"\n");
+                    }
+                    
+                    

                     cluster.setEnergy(energy);
                    	clusterList.add(cluster);
                 	}// End checking thresholds and write out.
                 }

+                

             
             } //End cluster loop
          // Write the event termination header.

@@ -532,6 +542,8 @@

         int flag = 1 << LCIOConstants.CLBIT_HITS;
         event.put(clusterCollectionName, clusterList, HPSEcalClusterIC.class, flag);
         event.put(rejectedHitName, rejectedHitList, CalorimeterHit.class, flag);

+        
+        

     }
     
     public void endOfData() {