Commit in java/sandbox on MAIN
users-15701075 removed


java/sandbox
users removed after 1075
--- java/sandbox/users	2014-09-24 21:14:32 UTC (rev 1075)
+++ java/sandbox/users	2014-09-24 21:23:00 UTC (rev 1076)
@@ -1,1570 +0,0 @@
-package org.hps.users.mgraham;
-
-import hep.aida.IAnalysisFactory;
-import hep.aida.IHistogram1D;
-import hep.aida.IHistogram2D;
-import hep.aida.IPlotter;
-import hep.aida.IPlotterStyle;
-import hep.physics.matrix.SymmetricMatrix;
-import hep.physics.vec.Hep3Vector;
-
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.logging.Level;
-import java.util.logging.Logger;
-
-import org.hps.conditions.deprecated.BeamlineConstants;
-import org.hps.conditions.deprecated.SvtUtils;
-import org.hps.recon.ecal.HPSEcalCluster;
-import org.hps.recon.tracking.DumbShaperFit;
-import org.hps.recon.tracking.HPSTrack;
-import org.hps.recon.tracking.HelixConverter;
-import org.hps.recon.tracking.ShaperFitAlgorithm;
-import org.hps.recon.tracking.StraightLineTrack;
-import org.hps.util.Resettable;
-import org.lcsim.detector.tracker.silicon.SiSensor;
-import org.lcsim.event.EventHeader;
-import org.lcsim.event.RawTrackerHit;
-import org.lcsim.event.Track;
-import org.lcsim.event.TrackerHit;
-import org.lcsim.fit.helicaltrack.HelicalTrackCross;
-import org.lcsim.fit.helicaltrack.HelicalTrackFit;
-import org.lcsim.fit.helicaltrack.HelicalTrackHit;
-import org.lcsim.geometry.Detector;
-import org.lcsim.geometry.IDDecoder;
-import org.lcsim.recon.tracking.seedtracker.SeedCandidate;
-import org.lcsim.recon.tracking.seedtracker.SeedTrack;
-import org.lcsim.util.Driver;
-import org.lcsim.util.aida.AIDA;
-
-import Jama.Matrix;
-import Jama.SingularValueDecomposition;
-
-/**
- *
- * @author elwinm
- */
-public class ElwinsTrackingRecon extends Driver implements Resettable {
-
-    //private AIDAFrame plotterFrame;
-    //private AIDAFrame topFrame;
-    //private AIDAFrame bottomFrame;
-    //private AIDAFrame chargeFrame;
-    //private AIDAFrame twotrackFrame;
-    private AIDA aida = AIDA.defaultInstance();
-    private String rawTrackerHitCollectionName = "SVTRawTrackerHits";
-    private String fittedTrackerHitCollectionName = "SVTFittedRawTrackerHits";
-    private String trackerHitCollectionName = "StripClusterer_SiTrackerHitStrip1D";
-    private String helicalTrackHitCollectionName = "HelicalTrackHits";
-    private String rotatedTrackHitCollectionName = "RotatedHelicalTrackHits";
-    private String helicalTrackHitRelationsCollectionName = "HelicalTrackHitRelations";
-    private String trackCollectionName = "MatchedTracks";
-    private String trackerName = "Tracker";
-    String ecalSubdetectorName = "Ecal";
-    String ecalCollectionName = "EcalClusters";
-    private Detector detector = null;
-    IDDecoder dec;
-    private int eventCount;
-    private List<SiSensor> sensors;
-    private String outputPlots = null;
-    IPlotter plotter;
-    IPlotter plotter2;
-    IPlotter plotter22;
-    IPlotter plotter222;
-    IPlotter plotter3;
-    IPlotter plotter3_1;
-    IPlotter plotter3_2;
-    IPlotter plotter4;
-    IPlotter plotter5;
-    IPlotter plotter5_1;
-    IPlotter plotter55;
-    IPlotter plotter6;
-    IPlotter plotter7;
-    IPlotter plotter9000;
-    IPlotter plotter9001;
-    IPlotter plotter9002;
-    IPlotter plotter9003;
-    IPlotter plotter9004;
-    IPlotter plotter9005;
-    IPlotter plotter9006;
-    IPlotter plotter9007;
-    IPlotter plotter9008;
-    IPlotter plotter9009;
-    IPlotter plotter9010;
-    IPlotter plotter9011;
-    IPlotter plotter9012;
-    IPlotter plotter9013;
-    IPlotter plotter9014;
-    IPlotter plotter9015;
-    IPlotter plotter9016;
-    IPlotter plotter9017;
-    IPlotter twotrkextra;
-    IPlotter twotrkextra2;
-    IPlotter threetrack;
-    IPlotter top1;
-    IPlotter top2;
-    IPlotter top3;
-    IPlotter top4;
-    IPlotter bot1;
-    IPlotter bot2;
-    IPlotter bot3;
-    IPlotter charge;
-    IPlotter bot4;
-    double zEcal = 1500;
-    double zAtDownStrPairSpec = 914.0; //mm
-    double zAtColl = -1500;
-    IHistogram1D trkPx;
-    IHistogram1D nTracks;
-    ShaperFitAlgorithm _shaper = new DumbShaperFit();
-
-    protected void detectorChanged(Detector detector) {
-        this.detector = detector;
-        aida.tree().cd("/");
-        //plotterFrame = new AIDAFrame();
-        //plotterFrame.setTitle("HPS Tracking Plots");
-
-        //twotrackFrame = new AIDAFrame();
-        //twotrackFrame.setTitle("Two Track Plots");
-
-        sensors = detector.getSubdetector(trackerName).getDetectorElement().findDescendants(SiSensor.class);
-
-        IAnalysisFactory fac = aida.analysisFactory();
-        plotter = fac.createPlotterFactory().create("HPS Tracking Plots");
-        plotter.setTitle("Momentum");
-        IPlotterStyle style = plotter.style();
-        style.dataStyle().fillStyle().setColor("yellow");
-        style.dataStyle().errorBarStyle().setVisible(false);
-        plotter.createRegions(2, 2);
-        //plotterFrame.addPlotter(plotter);
-
-        trkPx = aida.histogram1D("Track X Momentum", 25, -0.25, 0.25);
-        IHistogram1D trkPy = aida.histogram1D("Track Y Momentum", 25, -0.1, 0.1);
-        IHistogram1D trkPz = aida.histogram1D("Track Z Momentum", 25, 0, 3.5);
-        IHistogram1D trkChi2 = aida.histogram1D("Track Chi2", 25, 0, 25.0);
-
-        plotter.region(0).plot(trkPx);
-        plotter.region(1).plot(trkPy);
-        plotter.region(2).plot(trkPz);
-        plotter.region(3).plot(trkChi2);
-
-
-        plotter2 = fac.createPlotterFactory().create("HPS Tracking Plots");
-        plotter2.setTitle("Track extrapolation");
-        //plotterFrame.addPlotter(plotter2);
-        IPlotterStyle style2 = plotter2.style();
-        style2.dataStyle().fillStyle().setColor("yellow");
-        style2.dataStyle().errorBarStyle().setVisible(false);
-        plotter2.createRegions(2, 4);
-        IHistogram1D xAtConverter = aida.histogram1D("X (mm) @ Z=-60cm", 50, -50, 50);
-        IHistogram1D yAtConverter = aida.histogram1D("Y (mm) @ Z=-60cm", 50, -20, 20);
-        IHistogram1D xAtColl = aida.histogram1D("X (mm) @ Z=-150cm", 50, -200, 200);
-        IHistogram1D yAtColl = aida.histogram1D("Y (mm) @ Z=-150cm", 50, -200, 200);
-        IHistogram1D xAtEcal = aida.histogram1D("X (mm) @ ECAL", 50, -500, 500);
-        IHistogram1D yAtEcal = aida.histogram1D("Y (mm) @ ECAL", 50, -100, 100);
-        IHistogram1D xAtConvert = aida.histogram1D("X (mm) @ Converter", 50, -50, 50);
-        IHistogram1D yAtConvert = aida.histogram1D("Y (mm) @ Converter", 50, -20, 20);
-
-        plotter2.region(0).plot(xAtConverter);
-        plotter2.region(4).plot(yAtConverter);
-        plotter2.region(1).plot(xAtColl);
-        plotter2.region(5).plot(yAtColl);
-        plotter2.region(2).plot(xAtEcal);
-        plotter2.region(6).plot(yAtEcal);
-        plotter2.region(3).plot(xAtConvert);
-        plotter2.region(7).plot(yAtConvert);
-
-        twotrkextra = fac.createPlotterFactory().create("Two Trk Extrapolation");
-        twotrkextra.setTitle("Stuff");
-        //plotterFrame.addPlotter(twotrkextra);
-        IPlotterStyle styletwo = twotrkextra.style();
-        styletwo.dataStyle().fillStyle().setColor("blue");
-        styletwo.dataStyle().errorBarStyle().setVisible(false);
-        twotrkextra.createRegions(3, 2);
-        IHistogram1D x1AtTarget = aida.histogram1D("Trk1 X @ Target", 50, 0, 50);
-        IHistogram1D y1AtTarget = aida.histogram1D("Trk1 Y @ Target", 50, -5, 5);
-        IHistogram1D x2AtTarget = aida.histogram1D("Trk2 X @ Target", 50, 0, 50);
-        IHistogram1D y2AtTarget = aida.histogram1D("Trk2 Y @ Target", 50, -5, 5);
-        IHistogram1D distatt = aida.histogram1D("Distance btwn Trks @ Target", 40, 0, 40);
-        IHistogram1D zdiff = aida.histogram1D("Z Diff", 40, -.1, .1);
-
-        twotrkextra.region(0).plot(x1AtTarget);
-        twotrkextra.region(1).plot(y1AtTarget);
-        twotrkextra.region(2).plot(x2AtTarget);
-        twotrkextra.region(3).plot(y2AtTarget);
-        twotrkextra.region(4).plot(distatt);
-        twotrkextra.region(5).plot(zdiff);
-
-
-        plotter222 = fac.createPlotterFactory().create("HPS Tracking Plots");
-        plotter222.setTitle("Other");
-        //plotterFrame.addPlotter(plotter222);
-        IPlotterStyle style222 = plotter222.style();
-        style222.dataStyle().fillStyle().setColor("yellow");
-        style222.dataStyle().errorBarStyle().setVisible(false);
-        plotter222.createRegions(2, 3);
-
-        IHistogram1D nHits = aida.histogram1D("Hits per Track", 2, 4, 6);
-        IHistogram1D amp = aida.histogram1D("Amp (HitOnTrack)", 50, 0, 5000);
-        IHistogram1D ampcl = aida.histogram1D("Amp (CluOnTrack)", 50, 0, 5000);
-        IHistogram1D amp2 = aida.histogram1D("Amp Pz>1000 (HitOnTrack)", 50, 0, 5000);
-        IHistogram1D ampcl2 = aida.histogram1D("Amp Pz>1000 (CluOnTrack)", 50, 0, 5000);
-        nTracks = aida.histogram1D("Tracks per Event", 3, 0, 3);
-
-        plotter222.region(0).plot(nHits);
-        plotter222.region(3).plot(nTracks);
-        plotter222.region(1).plot(amp);
-        plotter222.region(4).plot(amp2);
-        plotter222.region(2).plot(ampcl);
-        plotter222.region(5).plot(ampcl2);
-
-
-        //plotterFrame.pack();
-        //plotterFrame.setVisible(true);
-
-
-        twotrkextra2 = fac.createPlotterFactory().create("Two Trk Uncertainties");
-        twotrkextra2.setTitle("Uncertainties");
-        plotter9000 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9000.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks = plotter9000.style();
-        plotter9001 = fac.createPlotterFactory().create("Two Track Plots 2");
-        plotter9001.setTitle("Two Track Plots Test 2");
-        IPlotterStyle TwoTracks1 = plotter9001.style();
-        plotter9002 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9002.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks2 = plotter9002.style();
-        plotter9003 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9003.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks3 = plotter9003.style();
-        plotter9004 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9004.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks4 = plotter9004.style();
-        plotter9005 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9005.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks5 = plotter9005.style();
-        plotter9006 = fac.createPlotterFactory().create("Two Track Versus");
-        plotter9006.setTitle("Two Track Versus");
-        IPlotterStyle TwoTracks6 = plotter9006.style();
-        plotter9007 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9007.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks7 = plotter9007.style();
-        plotter9008 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9008.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks8 = plotter9000.style();
-        plotter9009 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9009.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks9 = plotter9000.style();
-        plotter9010 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9010.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks10 = plotter9010.style();
-        plotter9011 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9011.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks11 = plotter9011.style();
-        plotter9012 = fac.createPlotterFactory().create("Two Track Plotz");
-        plotter9012.setTitle("Two Track Plotz Test");
-        IPlotterStyle TwoTracks12 = plotter9012.style();
-        plotter9013 = fac.createPlotterFactory().create("Two Track Plotz");
-        plotter9013.setTitle("Two Track Plotz Test");
-        IPlotterStyle TwoTracks13 = plotter9013.style();
-        plotter9014 = fac.createPlotterFactory().create("Two Track Plotz");
-        plotter9014.setTitle("Two Track Plotz Test");
-        IPlotterStyle TwoTracks14 = plotter9014.style();
-        plotter9015 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9015.setTitle("Two Track Plots Test");
-        IPlotterStyle TwoTracks15 = plotter9015.style();
-        plotter9016 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9016.setTitle("Test");
-        IPlotterStyle TwoTracks16 = plotter9016.style();
-        plotter9017 = fac.createPlotterFactory().create("Two Track Plots");
-        plotter9017.setTitle("Residuals");
-        IPlotterStyle TwoTracks17 = plotter9017.style();
-        threetrack = fac.createPlotterFactory().create("Three Track Plots");
-        threetrack.setTitle("Invariant Mass");
-
-
-        TwoTracks.dataStyle().fillStyle().setColor("green");
-        TwoTracks.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks.setParameter("hist2DStyle", "colorMap");
-        TwoTracks.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks1.dataStyle().fillStyle().setColor("green");
-        TwoTracks1.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks1.setParameter("hist2DStyle", "colorMap");
-        TwoTracks1.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks2.dataStyle().fillStyle().setColor("green");
-        TwoTracks2.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks2.setParameter("hist2DStyle", "colorMap");
-        TwoTracks2.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks3.dataStyle().fillStyle().setColor("green");
-        TwoTracks3.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks3.setParameter("hist2DStyle", "colorMap");
-        TwoTracks3.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks4.dataStyle().fillStyle().setColor("green");
-        TwoTracks4.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks4.setParameter("hist2DStyle", "colorMap");
-        TwoTracks4.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks5.dataStyle().fillStyle().setColor("green");
-        TwoTracks5.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks5.setParameter("hist2DStyle", "colorMap");
-        TwoTracks5.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks6.dataStyle().fillStyle().setColor("green");
-        TwoTracks6.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks6.setParameter("hist2DStyle", "colorMap");
-        TwoTracks6.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks7.dataStyle().fillStyle().setColor("green");
-        TwoTracks7.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks7.setParameter("hist2DStyle", "colorMap");
-        TwoTracks7.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks8.dataStyle().fillStyle().setColor("green");
-        TwoTracks8.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks8.setParameter("hist2DStyle", "colorMap");
-        TwoTracks8.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks9.dataStyle().fillStyle().setColor("green");
-        TwoTracks9.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks9.setParameter("hist2DStyle", "colorMap");
-        TwoTracks9.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks10.dataStyle().fillStyle().setColor("green");
-        TwoTracks10.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks10.setParameter("hist2DStyle", "colorMap");
-        TwoTracks10.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks11.dataStyle().fillStyle().setColor("green");
-        TwoTracks11.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks11.setParameter("hist2DStyle", "colorMap");
-        TwoTracks11.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks12.dataStyle().fillStyle().setColor("green");
-        TwoTracks12.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks13.dataStyle().fillStyle().setColor("green");
-        TwoTracks13.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks14.dataStyle().fillStyle().setColor("green");
-        TwoTracks14.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks15.dataStyle().fillStyle().setColor("green");
-        TwoTracks15.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks15.setParameter("hist2DStyle", "colorMap");
-        TwoTracks15.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        TwoTracks16.dataStyle().fillStyle().setColor("green");
-        TwoTracks16.dataStyle().errorBarStyle().setVisible(false);
-        TwoTracks16.setParameter("hist2DStyle", "colorMap");
-        TwoTracks16.dataStyle().fillStyle().setParameter("colorMapScheme", "rainbow");
-        IPlotterStyle styletwotwo = twotrkextra2.style();
-        styletwotwo.dataStyle().fillStyle().setColor("blue");
-        styletwotwo.dataStyle().errorBarStyle().setVisible(false);
-
-        IPlotterStyle threesty = threetrack.style();
-        threesty.dataStyle().fillStyle().setColor("blue");
-        threesty.dataStyle().errorBarStyle().setVisible(false);
-
-
-
-        twotrkextra2.createRegions(3, 2);
-        plotter9000.createRegion();
-        plotter9001.createRegion();
-        plotter9002.createRegions(2, 1);
-        plotter9003.createRegion();
-        plotter9004.createRegion();
-        plotter9005.createRegion();
-        plotter9006.createRegions(1, 3);
-        plotter9007.createRegions(2, 3);
-        plotter9008.createRegions(2, 2);
-        plotter9009.createRegions(2, 2);
-        plotter9010.createRegions(2, 2);
-        plotter9011.createRegions(2, 2);
-        plotter9012.createRegions(2, 2);
-        //   plotter9013.createRegions(2, 2);
-        //    plotter9014.createRegions(2, 2);
-        plotter9015.createRegions(2, 2);
-        plotter9016.createRegions(2, 2);
-        plotter9017.createRegions(2, 2);
-        threetrack.createRegion();
-
-//        twotrackFrame.addPlotter(plotter9000);
-//        twotrackFrame.addPlotter(plotter9001);
-//        twotrackFrame.addPlotter(plotter9002);
-//        twotrackFrame.addPlotter(plotter9003);
-//        twotrackFrame.addPlotter(plotter9004);
-//        twotrackFrame.addPlotter(plotter9005);
-//        twotrackFrame.addPlotter(plotter9006);
-//        twotrackFrame.addPlotter(plotter9007);
-//        twotrackFrame.addPlotter(plotter9008);
-//        twotrackFrame.addPlotter(plotter9009);
-//        twotrackFrame.addPlotter(plotter9010);
-//        twotrackFrame.addPlotter(plotter9011);
-//        twotrackFrame.addPlotter(plotter9012);
-        //   twotrackFrame.addPlotter(plotter9013);
-        //  twotrackFrame.addPlotter(plotter9014);
-//        twotrackFrame.addPlotter(plotter9015);
-//        twotrackFrame.addPlotter(plotter9016);
-//        twotrackFrame.addPlotter(plotter9017);
-//        twotrackFrame.addPlotter(twotrkextra2);
-//        twotrackFrame.addPlotter(threetrack);
-
-        IHistogram1D trkbins = aida.histogram1D("Track Distributions", 5, -2, 3);
-        IHistogram2D twtrkptot = aida.histogram2D("Total P+ vs. P-", 60, 0, 4, 60, 0, 4);
-        IHistogram1D sumtrks = aida.histogram1D("Sum of Track's Momentums", 100, -1, 7);
-        IHistogram1D invarmass = aida.histogram1D("Invariant Mass", 50, 0, .2);
-        IHistogram1D perptrks = aida.histogram1D("Perpendicular Momentum", 100, 0, .1);
-        IHistogram2D pyppm = aida.histogram2D("Py+ vs. Py-", 60, -.1, .1, 60, -.1, .1);
-        IHistogram2D pzppm = aida.histogram2D("Pz+ vs. Pz-", 60, -.1, .1, 60, -.1, .1);
-        IHistogram1D px = aida.histogram1D("Two Track X Momentum", 40, 0, 4);
-        IHistogram1D py = aida.histogram1D("Two Track Y Momentum", 40, -.1, .1);
-        IHistogram1D pz = aida.histogram1D("Two Track Z Momentum", 40, -.1, .1);
-        IHistogram1D chi2 = aida.histogram1D("Tracks Chi2", 25, 0, 25.0);
-        IHistogram1D bbpx = aida.histogram1D("Big Bump Track Momenta (Px)", 40, 0, 4);
-        IHistogram1D bbpy = aida.histogram1D("Big Bump Track Momenta (Py)", 40, -.1, .1);
-        IHistogram1D bbpz = aida.histogram1D("Big Bump Track Momenta (Pz)", 40, -.1, .1);
-        IHistogram1D bbchi2 = aida.histogram1D("Big Bump Tracks Chi2", 25, 0, 25.0);
-        IHistogram1D spx = aida.histogram1D("Split Track Momenta (Px)", 40, 0, 4);
-        IHistogram1D spy = aida.histogram1D("Split Track Momenta (Py)", 40, -.1, .1);
-        IHistogram1D spz = aida.histogram1D("Split Track Momenta (Pz)", 40, -.1, .1);
-        IHistogram1D schi2 = aida.histogram1D("Split Tracks Chi2", 25, 0, 25.0);
-        IHistogram1D bbsumtrks = aida.histogram1D("Big Bump Sum of Track's Momentums", 50, -1, 7);
-        IHistogram2D bbpppm = aida.histogram2D("Big Bump P+ vs. P-", 50, 0, 4, 50, 0, 4);
-        IHistogram2D lbpppm = aida.histogram2D("Little Bump P+ vs. P-", 50, 0, 4, 50, 0, 4);
-        IHistogram1D lbsumtrks = aida.histogram1D("Little Bump Sum of Track's Momentums", 50, -1, 7);
-        IHistogram1D lbpx = aida.histogram1D("Little Bump Track Momenta (Px)", 40, 0, 4);
-        IHistogram1D lbpy = aida.histogram1D("Little Bump Track Momenta (Py)", 40, -.1, .1);
-        IHistogram1D lbpz = aida.histogram1D("Little Bump Track Momenta (Pz)", 40, -.1, .1);
-        IHistogram1D lbchi2 = aida.histogram1D("Little Bump Tracks Chi2", 25, 0, 25.0);
-        //     IHistogram1D q0spx = aida.histogram1D("Net Charge 0 Split Track Momenta (Px)", 40, 0, 4);
-        //     IHistogram1D q0spy = aida.histogram1D("Net Charge 0 Split Track Momenta (Py)", 40, -.1, .1);
-        //     IHistogram1D q0spz = aida.histogram1D("Net Charge 0 Split Track Momenta (Pz)", 40, -.1, .1);
-        //     IHistogram1D q0schi2 = aida.histogram1D("Net Charge 0 Split Tracks Chi2", 25, 0, 25.0);
-        IHistogram2D xyemt = aida.histogram2D("X v Y - e- Top", 50, -30, 50, 50, -35, 30);
-        IHistogram2D xzemt = aida.histogram2D("X v Z - e- Top", 50, -30, 50, 50, -800, -450);
-        IHistogram2D yzemt = aida.histogram2D("Y v Z - e- Top", 50, -35, 30, 50, -800, -450);
-        IHistogram1D qbins = aida.histogram1D("Charge Distributions", 5, -2, 3);
-        IHistogram1D lbtp = aida.histogram1D("Little Bump Track Parity", 7, 0, 7);
-        IHistogram1D bbtp = aida.histogram1D("Big Bump Track Parity", 7, 0, 7);
-        IHistogram1D xvert = aida.histogram1D("XVertex", 40, -30, 50);
-        IHistogram1D yvert = aida.histogram1D("YVertex", 40, -35, 30);
-        IHistogram1D zvert = aida.histogram1D("ZVertex", 40, -800, -450);
-        IHistogram1D dist = aida.histogram1D("Distance btwn Trks @ Solution", 40, 0, 20);
-        IHistogram1D xres = aida.histogram1D("X Res Trk1", 40, -0.25, 0.25);
-        IHistogram1D yres = aida.histogram1D("Y Res Trk1", 40, -0.25, 0.25);
-        IHistogram1D xres2 = aida.histogram1D("X Res Trk2", 40, -0.25, 0.25);
-        IHistogram1D yres2 = aida.histogram1D("Y Res Trk2", 40, -0.25, 0.25);
-        IHistogram1D unx1 = aida.histogram1D("Uncert X Trk 1", 50, 0, 10);
-        IHistogram1D uny1 = aida.histogram1D("Uncert Y Trk 1", 50, 0, 10);
-        IHistogram1D unz1 = aida.histogram1D("Uncert Z Trk 1", 50, 0, 40);
-        IHistogram1D unx2 = aida.histogram1D("Uncert X Trk 2", 50, 0, 10);
-        IHistogram1D uny2 = aida.histogram1D("Uncert Y Trk 2", 50, 0, 10);
-        IHistogram1D unz2 = aida.histogram1D("Uncert Z Trk 2", 50, 0, 40);
-        IHistogram2D xy = aida.histogram2D("X v Y", 50, -30, 50, 50, -35, 30);
-        IHistogram2D xz = aida.histogram2D("X v Z", 50, -30, 50, 50, -800, -450);
-        IHistogram2D yz = aida.histogram2D("Y v Z", 50, -35, 30, 50, -800, -450);
-        IHistogram2D xyept = aida.histogram2D("X v Y - e+ Top", 50, -30, 50, 50, -35, 30);
-        IHistogram2D xzept = aida.histogram2D("X v Z - e+ Top", 50, -30, 50, 50, -800, -450);
-        IHistogram2D yzept = aida.histogram2D("Y v Z - e+ Top", 50, -35, 30, 50, -800, -450);
-        IHistogram1D three = aida.histogram1D("Three Track Invariant Mass", 50, 0, .4);
-
-        //twotrackFrame.pack();
-        //twotrackFrame.setVisible(true);
-
-        plotter9000.region(0).plot(trkbins);
-        plotter9001.region(0).plot(twtrkptot);
-        plotter9002.region(0).plot(sumtrks);
-        plotter9002.region(1).plot(invarmass);
-        plotter9003.region(0).plot(perptrks);
-        plotter9004.region(0).plot(pyppm);
-        plotter9005.region(0).plot(pzppm);
-        plotter9006.region(0).plot(xy);
-        plotter9006.region(1).plot(xz);
-        plotter9006.region(2).plot(yz);
-        plotter9007.region(0).plot(xyemt);
-        plotter9007.region(1).plot(xzemt);
-        plotter9007.region(2).plot(yzemt);
-        plotter9007.region(3).plot(xyept);
-        plotter9007.region(4).plot(xzept);
-        plotter9007.region(5).plot(yzept);
-        plotter9008.region(0).plot(px);
-        plotter9008.region(1).plot(py);
-        plotter9008.region(2).plot(pz);
-        plotter9008.region(3).plot(chi2);
-        plotter9009.region(0).plot(bbpx);
-        plotter9009.region(1).plot(bbpy);
-        plotter9009.region(2).plot(bbpz);
-        plotter9009.region(3).plot(bbchi2);
-        plotter9010.region(0).plot(spx);
-        plotter9010.region(1).plot(spy);
-        plotter9010.region(2).plot(spz);
-        plotter9010.region(3).plot(schi2);
-        plotter9011.region(0).plot(bbsumtrks);
-        plotter9011.region(1).plot(bbpppm);
-        plotter9011.region(2).plot(lbpppm);
-        plotter9011.region(3).plot(lbsumtrks);
-        plotter9012.region(0).plot(lbpx);
-        plotter9012.region(1).plot(lbpy);
-        plotter9012.region(2).plot(lbpz);
-        plotter9012.region(3).plot(lbchi2);
-        //    plotter9013.region(0).plot(q0spx);
-        //    plotter9013.region(1).plot(q0spy);
-        //    plotter9013.region(2).plot(q0spz);
-        //    plotter9013.region(3).plot(q0schi2);
-        plotter9015.region(0).plot(qbins);
-        plotter9015.region(1).plot(lbtp);
-        plotter9015.region(2).plot(bbtp);
-        plotter9016.region(0).plot(xvert);
-        plotter9016.region(1).plot(yvert);
-        plotter9016.region(2).plot(zvert);
-        plotter9016.region(3).plot(dist);
-        plotter9017.region(0).plot(xres);
-        plotter9017.region(1).plot(yres);
-        plotter9017.region(2).plot(xres2);
-        plotter9017.region(3).plot(yres2);
-
-        twotrkextra2.region(0).plot(unx1);
-        twotrkextra2.region(1).plot(uny1);
-        twotrkextra2.region(2).plot(unz1);
-        twotrkextra2.region(3).plot(unx2);
-        twotrkextra2.region(4).plot(uny2);
-        twotrkextra2.region(5).plot(unz2);
-        threetrack.region(0).plot(three);
-
-
-
-    }
-
-    public ElwinsTrackingRecon() {
-    }
-
-    public void setOutputPlots(String output) {
-        this.outputPlots = output;
-    }
-
-    public void setRawTrackerHitCollectionName(String rawTrackerHitCollectionName) {
-        this.rawTrackerHitCollectionName = rawTrackerHitCollectionName;
-    }
-
-    public void setFittedTrackerHitCollectionName(String fittedTrackerHitCollectionName) {
-        this.fittedTrackerHitCollectionName = fittedTrackerHitCollectionName;
-    }
-
-    public void setTrackerHitCollectionName(String trackerHitCollectionName) {
-        this.trackerHitCollectionName = trackerHitCollectionName;
-    }
-
-    public void setHelicalTrackHitCollectionName(String helicalTrackHitCollectionName) {
-        this.helicalTrackHitCollectionName = helicalTrackHitCollectionName;
-    }
-
-    public void setTrackCollectionName(String trackCollectionName) {
-        this.trackCollectionName = trackCollectionName;
-    }
-
-    public void process(EventHeader event) {
-        aida.tree().cd("/");
-        if (!event.hasCollection(HelicalTrackHit.class, helicalTrackHitCollectionName)) {
-            //       System.out.println(helicalTrackHitCollectionName + " does not exist; skipping event");
-            return;
-        }
-        if (event.get(Track.class, trackCollectionName).size() < 2) {
-            //    System.out.println(trackCollectionName + " has less than two tracks; skipping event");
-            return;
-        }
-
-        List<HelicalTrackHit> rotList = event.get(HelicalTrackHit.class, rotatedTrackHitCollectionName);
-        for (HelicalTrackHit hth : rotList) {
-            HelicalTrackCross htc = (HelicalTrackCross) hth;
-//            System.out.println("TrackingReconstructionPlots::original helical track position = "+hth.getPosition()[0]+","+hth.getPosition()[1]+","+hth.getPosition()[2]);
-//            System.out.println("TrackingReconstructionPlots::corrected helical track position = "+htc.getCorrectedPosition().toString());
-        }
-
-        List<HelicalTrackHit> hthList = event.get(HelicalTrackHit.class, helicalTrackHitCollectionName);
-        int[] layersTop = {0, 0, 0, 0, 0, 0, 0, 0, 0, 0};
-        int[] layersBot = {0, 0, 0, 0, 0, 0, 0, 0, 0, 0};
-        for (HelicalTrackHit hth : hthList) {
-            HelicalTrackCross htc = (HelicalTrackCross) hth;
-//            System.out.println("TrackingReconstructionPlots::original helical track position = "+hth.getPosition()[0]+","+hth.getPosition()[1]+","+hth.getPosition()[2]);
-//            System.out.println("TrackingReconstructionPlots::corrected helical track position = "+htc.getCorrectedPosition().toString());
-            //These Helical Track Hits are in the JLAB frame
-//            htc.resetTrackDirection();
-            double x = htc.getPosition()[0];
-            double y = htc.getPosition()[1];
-            SiSensor sensor = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement());
-            if (SvtUtils.getInstance().isTopLayer(sensor)) {
-                layersTop[htc.Layer() - 1]++;
-                Hep3Vector sensorPos = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement()).getGeometry().getPosition();
-                if (htc.Layer() == 1) {
-//                    System.out.println(sensorPos.toString());
-//                    System.out.println("Hit X = " + x + "; Hit Y = " + y);
-//                    aida.histogram2D("Layer 1 HTH Position:  Top").fill(x - sensorPos.x(), y - sensorPos.y());
-                }
-//                if (htc.Layer() == 7)
-//                    aida.histogram2D("Layer 7 HTH Position:  Top").fill(x - sensorPos.x(), y - sensorPos.y());
-            } else {
-                layersBot[htc.Layer() - 1]++;
-                Hep3Vector sensorPos = ((SiSensor) ((RawTrackerHit) htc.getRawHits().get(0)).getDetectorElement()).getGeometry().getPosition();
-                if (htc.Layer() == 1) {
-//                    System.out.println(sensorPos.toString());
-//                    System.out.println("Hit X = " + x + "; Hit Y = " + y);
-//                    aida.histogram2D("Layer 1 HTH Position:  Bottom").fill(x - sensorPos.x(), y - sensorPos.y());
-                }
-//                if (htc.Layer() == 7)
-//                    aida.histogram2D("Layer 7 HTH Position:  Bottom").fill(x - sensorPos.x(), y - sensorPos.y());
-            }
-        }
-
-        if (!event.hasCollection(Track.class, trackCollectionName)) {
-//            System.out.println(trackCollectionName + " does not exist; skipping event");
-            //      aida.histogram1D("Number Tracks/Event").fill(0);
-            return;
-        }
-
-
-        List<Track> tracks = event.get(Track.class, trackCollectionName);
-        nTracks.fill(tracks.size());
-
-
-        if (tracks.size() == 2) { //uncert can be used here  && (Ytrue || Ytrue2) && (Xtrue || Xtrue2)
-
-            Track trk1 = tracks.get(0);
-            Track trk2 = tracks.get(1);
-            int isTrk1Top = -1;
-            if (trk1.getTrackerHits().get(0).getPosition()[2] > 0) {
-                isTrk1Top = 1;
-            }
-            int isTrk2Top = -1;
-            if (trk2.getTrackerHits().get(0).getPosition()[2] > 0) {
-                isTrk2Top = 1;
-            }
-            boolean topbot = false;
-            if ((isTrk1Top + isTrk2Top) == 0) {
-                topbot = true;
-            }
-
-            SeedTrack stEle1 = (SeedTrack) trk1;
-            SeedCandidate seedEle1 = stEle1.getSeedCandidate();
-            HelicalTrackFit ht1 = seedEle1.getHelix();
-            HelixConverter converter1 = new HelixConverter(0);
-            StraightLineTrack slt1 = converter1.Convert(ht1);
-
-            SeedTrack stEle2 = (SeedTrack) trk2;
-            SeedCandidate seedEle2 = stEle2.getSeedCandidate();
-            HelicalTrackFit ht2 = seedEle2.getHelix();
-            HelixConverter converter2 = new HelixConverter(0);
-            StraightLineTrack slt2 = converter2.Convert(ht2);
-
-            HPSTrack hpstrack1 = new HPSTrack(ht1);
-            Hep3Vector[] trkatconver1 = hpstrack1.getPositionAtZMap(100, BeamlineConstants.HARP_POSITION_TESTRUN, 1);
-            HPSTrack hpstrack2 = new HPSTrack(ht2);
-            Hep3Vector[] trkatconver2 = hpstrack2.getPositionAtZMap(100, BeamlineConstants.HARP_POSITION_TESTRUN, 1);
-
-
-
-            List<TrackerHit> hitsOnTrack1 = trk1.getTrackerHits();
-            int layer1;
-            double y1 = 0;
-            double y2 = 0;
-            double z1 = 0;
-            double z2 = 0;
-            double dely1 = 0;
-            double dely2 = 0;
-            for (TrackerHit hit : hitsOnTrack1) {
-                HelicalTrackHit htc1 = (HelicalTrackHit) hit;
-                layer1 = htc1.Layer();
-                int y1layer = 0;
-                int y2layer = 0;
-                if (y1 == 0) {
-                    y1 = htc1.getPosition()[2]; //
-                    z1 = htc1.getPosition()[0]; // z1 is jlab but the get position refers to hps-tracking
-                    y1layer = layer1;
-                    SymmetricMatrix ErrorHitOne = htc1.getCorrectedCovMatrix();
-                    dely1 = Math.sqrt(ErrorHitOne.diagonal(2)); //y in jlab is z in hps
-                } else {
-
-                    if ((layer1 > y1layer) && (y2layer == 0)) {
-                        y2 = htc1.getPosition()[2]; //
-                        z2 = htc1.getPosition()[0]; // see above comments!
-                        y2layer = layer1;
-                        SymmetricMatrix ErrorHitTwo = htc1.getCorrectedCovMatrix();
-                        dely2 = Math.sqrt(ErrorHitTwo.diagonal(2));
-                    }
-
-                }
-
-            }
-            List<TrackerHit> hitsOnTrack2 = trk2.getTrackerHits();
-
-            double my1 = 0;
-            double my2 = 0;
-            double mz1 = 0;
-            double mz2 = 0;
-            double delymy1 = 0;
-            double delymy2 = 0;
-            int layer2;
-            for (TrackerHit hit : hitsOnTrack2) {
-                HelicalTrackHit htc2 = (HelicalTrackHit) hit;
-//            if (htc.getPosition()[2] < 0) {
-
-                layer2 = htc2.Layer();
-                int my1layer = 0;
-                int my2layer = 0;
-                if (my1 == 0) {
-                    my1 = htc2.getPosition()[2]; //see above comments
-                    mz1 = htc2.getPosition()[0];
-                    my1layer = layer2;
-                    SymmetricMatrix ErrorHitOne = htc2.getCorrectedCovMatrix();
-                    delymy1 = Math.sqrt(ErrorHitOne.diagonal(2));
-                } else {
-                    if ((layer2 > my1layer) && (my2layer == 0)) {
-                        my2 = htc2.getPosition()[2];
-                        mz2 = htc2.getPosition()[0];
-                        my2layer = layer2;
-                        SymmetricMatrix ErrorHitTwo = htc2.getCorrectedCovMatrix();
-                        delymy2 = Math.sqrt(ErrorHitTwo.diagonal(2));
-                    }
-                }
-            }
-            //   double dely = .00001; //mm
-            double b1;
-            double m1;
-            double b2;
-            double m2;
-            boolean check1 = true;
-            if (y1 == 0) {
-                check1 = false;
-            }
-            boolean check2 = true;
-            if (my1 == 0) {
-                check2 = false;
-            }
-            boolean check3 = true;
-            if (my2 == 0) {
-                check3 = false;
-            }
-
-
-
-
-            double X1 = slt1.getYZAtX(BeamlineConstants.HARP_POSITION_TESTRUN)[0];
-            double Y1 = slt1.getYZAtX(BeamlineConstants.HARP_POSITION_TESTRUN)[1];
-
-            //   boolean Y1top = false;
-            //    boolean X1plus = false;
-            //     boolean Y1bot = false;
-            //      boolean X1minus = false;
-            boolean X1cent = false;
-            boolean Y1cent = false; //for simulation
-
-            if (11 < X1 && X1 < 29) {
-                X1cent = true;
-            }
-            if (-3.5 < Y1 && Y1 < 3.5) {
-                Y1cent = true;
-            }
-
-            //    if (1 < Y1 && Y1 < 6) { //1 < Y1 && Y1 < 6 +-2.5
-            //       Y1top = true;
-            //  }
-            //     if (11 < X1 && X1 < 29) { // 4 < X1 && X1 < 16 +-6
-            //           X1minus = true;
-            //      }
-            //        if (-5 < Y1 && Y1 < 0) { // -5 < Y1 && Y1 < 0 +-2.5
-            //           Y1bot = true;
-            //      }
-            //       if (11 < X1 && X1 < 29) { // 24 < X1 && X1 < 36 +-6
-            //          X1plus = true;
-            //     }
-            double X2 = slt2.getYZAtX(BeamlineConstants.HARP_POSITION_TESTRUN)[0];
-            double Y2 = slt2.getYZAtX(BeamlineConstants.HARP_POSITION_TESTRUN)[1];
-
-            //      boolean Y2top = false; //for data
-            //     boolean X2plus = false;
-            //    boolean Y2bot = false; //in general
-            //      boolean X2minus = false;
-            boolean X2cent = false;
-            boolean Y2cent = false; //for simulation
-            if (11 < X2 && X2 < 29) {
-                X2cent = true;
-            }
-            if (-3.5 < Y2 && Y2 < 3.5) {
-                Y2cent = true;
-            }
-            //       if (1 < Y2 && Y2 < 6) {
-            //          Y2top = true;
-            //     }
-            //      if (11 < X2 && X2 < 29) {
-            //           X2minus = true;
-            //      }
-            //   if (-5 < Y2 && Y2 < 0) {
-            //      Y2bot = true;
-            // }
-            //       if (11 < X2 && X2 < 29) {
-            //           X2plus = true;
-            //       }
-
-
-            //      boolean Trk1Top = false;
-            //     boolean Trk2Top = false;
-            //    boolean Trk1Bot = false;
-            //   boolean Trk2Bot = false;
-            //  if (isTrk1Top == 1) {
-            //             Trk1Top = true;
-            //       }
-            //     if (isTrk2Top == 1) {
-            //       Trk2Top = true;
-            //         }
-            //       if (isTrk1Top == -1) {
-            //         Trk1Bot = true;
-            //   }
-            //  if (isTrk2Top == -1) {
-            //    Trk2Bot = true;
-            //      }
-            //  boolean Trk1goodTop = false;
-            //   boolean Trk2goodTop = false;
-            // boolean Trk1goodBot = false;
-            //   boolean Trk2goodBot = false;
-            //      if (Trk1Top && Y1top) {
-            //         Trk1goodTop = true;
-            //    }
-            //   if (Trk2Top && Y2top) {
-            //            Trk2goodTop = true;
-            //   }
-            //   if (Trk1Bot && Y1bot) {
-            //      Trk1goodBot = true;
-            //   }
-            //   if (Trk2Bot && Y2bot) {
-            //      Trk2goodBot = true;
-            //  }
-
-            int qtrk1 = trk1.getCharge();
-            int qtrk2 = trk2.getCharge();
-            boolean pm = false;
-            if ((qtrk1 + qtrk2) == 0) {
-                pm = true;
-            }
-
-            //   boolean Trk1Plus = false;
-            //    boolean Trk2Plus = false;
-            //      boolean Trk1Minus = false;
-            //       boolean Trk2Minus = false;
-            //       if (qtrk1 > 0) {
-            //           Trk1Plus = true;
-            //        } else {
-            //             Trk1Minus = true;
-            //        }
-            //       if (qtrk2 > 0) {
-            //           Trk2Plus = true;
-            //      } else {
-            //          Trk2Minus = true;
-            //     }
-
-            //    boolean Trk1goodPlus = false;
-            //     boolean Trk2goodPlus = false;
-            //     boolean Trk1goodMinus = false;
-            //    boolean Trk2goodMinus = false;
-
-            //       if (Trk1Plus && X1plus) {
-            //          Trk1goodPlus = true;
-            //       }
-            //       if (Trk2Plus && X2plus) {
-            //           Trk2goodPlus = true;
-            //        }
-            //       if (Trk1Minus && X1minus) {
-            //        Trk1goodMinus = true;
-            //       }
-            //        if (Trk2Minus && X2minus) {
-            //          Trk2goodMinus = true;
-            //       }
-            if (topbot && pm) {
-
-                double b1p;
-                double b2p;
-                double m1p;
-                double m2p;
-
-                if (check1 && check2 && check3) {
-                    if (isTrk1Top == 1) {
-                        double zc = -1 * z1 / (z2 - z1);
-                        b1 = (zc * (y2 - y1 + .5 * (dely2 + dely1))) + y1 - (.5 * dely1);
-                        m1 = (y2 - y1 + .5 * (dely2 + dely1)) / (z2 - z1);
-                        m1p = (y2 - y1 - .5 * (dely2 + dely1)) / (z2 - z1);
-                        b1p = y1 - (m1p * z1) + (.5 * dely1);
-                    } else {
-                        double zc = -1 * z1 / (z2 - z1);
-                        b1 = (zc * (y2 - y1 - .5 * (dely2 + dely1))) + y1 + (.5 * dely1);
-                        m1 = (y2 - y1 - .5 * (dely2 + dely1)) / (z2 - z1);
-                        m1p = (y2 - y1 + .5 * (dely2 + dely1)) / (z2 - z1);
-                        b1p = y1 - (m1p * z1) - (.5 * dely1);
-                    }
-
-                    if (isTrk2Top == 1) {
-                        double zc = -1 * mz1 / (mz2 - mz1);
-                        b2 = (zc * (my2 - my1 + .5 * (delymy2 + delymy1))) + my1 - (.5 * delymy1);
-                        m2 = (my2 - my1 + .5 * (delymy2 + delymy1)) / (mz2 - mz1);
-                        m2p = (my2 - my1 - .5 * (delymy2 + delymy1)) / (mz2 - mz1);
-                        b2p = my1 - (m2p * mz1) + (.5 * delymy1);
-                    } else {
-                        double zc = -1 * mz1 / (mz2 - mz1);
-                        b2 = (zc * (my2 - my1 - .5 * (delymy2 + delymy1))) + my1 + (.5 * delymy1);
-                        m2 = (my2 - my1 - .5 * (delymy2 + delymy1)) / (mz2 - mz1);
-                        m2p = (my2 - my1 + .5 * (delymy2 + delymy1)) / (mz2 - mz1);
-                        b2p = my1 - (m2p * mz1) - (.5 * delymy1);
-                    }
-                    //    System.out.println("y1 = " + y1);
-                    //    System.out.println("y2 = " + y2);
-                    //    System.out.println("y'1 = " + my1);
-                    //    System.out.println("y'2 = " + my2);
-                    double zi = (b2 - b1) / (m1 - m2);
-                    double zr = Math.abs(zi - BeamlineConstants.HARP_POSITION_TESTRUN);
-                    double zs = 2 * zr / 100;
-                    //      System.out.println("Closest Possible Z to Tracker");
-                    //      System.out.println(zi);
-
-
-                    List<double[]> Trk1 = new ArrayList<double[]>();
-                    for (int i = 0; i < 100; i++) {
-                        double z = BeamlineConstants.HARP_POSITION_TESTRUN - zr + (zs * i);
-                        double[] posvec = new double[3];
-                        Hep3Vector[] trk1atz = hpstrack1.getPositionAtZMap(100, z, 1);
-                        posvec[0] = trk1atz[0].x();
-                        posvec[1] = trk1atz[0].y();
-                        posvec[2] = z;
-
-                        Trk1.add(posvec);
-                    }
-                    //  System.out.println("Vectors ");
-
-                    //  System.out.println(Trk1);
-
-                    double xbar = 0;
-                    double ybar = 0;
-                    double zbar = 0;
-                    double xsqbar = 0;
-                    double ysqbar = 0;
-                    double zsqbar = 0;
-                    int n = 0;
-                    for (double[] inttrk : Trk1) {
-                        //      System.out.println(inttrk[0]);
-                        //    System.out.println(inttrk[1]);
-                        //    System.out.println(inttrk[2]);
-                        xbar = xbar + inttrk[0];
-                        ybar = ybar + inttrk[1];
-                        zbar = zbar + inttrk[2];
-                        n = n + 1;
-                    }
-                    //   System.out.println("n " + n);
-                    xbar = xbar / n;
-                    ybar = ybar / n;
-                    zbar = zbar / n;
-                    //    System.out.println("Xbar is " + xbar);
-                    //    System.out.println("Ybar is " + ybar);
-                    //    System.out.println("Zbar is " + zbar);
-                    Matrix d;
-                    Matrix A = Matrix.random(n, 3);
-                    int j1 = 0;
-                    for (double[] inttrk : Trk1) {
-                        A.set(j1, 0, inttrk[0] - xbar);
-                        A.set(j1, 1, inttrk[1] - ybar);
-                        A.set(j1, 2, inttrk[2] - zbar);
-                        j1++;
-                    }
-
-                    //           System.out.println("Matrix A");
-                    //           A.print(9, 6);
-                    A.svd();
-                    SingularValueDecomposition s = A.svd();
-                    Matrix S = s.getS();
-                    //         System.out.println("S Matrix");
-                    //         S.print(9, 6);
-                    Matrix V = s.getV();
-                    //         System.out.println("V Matrix");
-                    //         V.print(9, 6);
-                    d = V.getMatrix(0, 2, 0, 0);
-                    double[] dd;
-                    dd = new double[3];
-
-                    dd[0] = d.get(0, 0);
-                    dd[1] = d.get(1, 0);
-                    dd[2] = d.get(2, 0);
-                    double nd = Math.sqrt((Math.pow(dd[0], 2)) + (Math.pow(dd[1], 2)) + (Math.pow(dd[2], 2)));
-
-                    for (double[] inttrk : Trk1) {
-                        double t1 = (inttrk[2] - zbar) / dd[2];
-                        double restrk1[];
-                        restrk1 = new double[3];
-                        restrk1[0] = xbar + (t1) * dd[0] - inttrk[0];
-                        restrk1[1] = ybar + (t1) * dd[1] - inttrk[1];
-                        restrk1[2] = zbar + (t1) * dd[2] - inttrk[2];
-                        aida.histogram1D("X Res Trk1").fill(restrk1[0]);
-                        aida.histogram1D("Y Res Trk1").fill(restrk1[1]);
-                    }
-
-                    List<double[]> Trk2 = new ArrayList<double[]>();
-                    for (int i = 0; i < 100; i++) {
-                        double z = BeamlineConstants.HARP_POSITION_TESTRUN - zr + (zs * i);
-                        double[] posvec2 = new double[3];
-                        Hep3Vector[] trk2atz = hpstrack2.getPositionAtZMap(100, z, 1);
-                        posvec2[0] = trk2atz[0].x();
[truncated at 1000 lines; 573 more skipped]
SVNspam 0.1