Hi Fabrice, thanks! Check my other email which I sent right before noon and see if it fixes crash. Cheers, Andy Fabrice Jammes wrote on 2015-03-13: > Hi Andy, > > I just checked your email. I met this problem but only on cmsd worker. > With Daniel help, I have fixed it in u/fjammes/DM-213. See last commits > : > https://github.com/lsst/qserv/commit/d5abe798cfceadbcafd0b555de5c986d4a3c > 7 605 > https://github.com/lsst/qserv/commit/a784bce2f5bb9f1f1a4631250054838084c9 > 5 619 > > I'll try what you propose for log pb. Thanks! > > > > On 03/13/2015 10:56 AM, Salnikov, Andrei A. wrote: >> Hi Fabrice, >> >> is master (git master) supposed to work? I get weird message >> from cmsd when I try to start Qserv (both worker and master): >> >> ------ [log in to unmask] phase 1 server >> initialization completed. ++++++ [log in to unmask] >> phase 2 server initialization started. Plugin >> /usr/local/home/salnikov/dm-2294/lib/libxrdoss.so: undefined symbol: >> _ZN6google8protobuf8internal12kEmptyStringE osslib libxrdoss.so ------ >> [log in to unmask] phase 2 server initialization >> failed. 150313 12:30:02 15616 XrdProtocol: Protocol cmsd could not be >> loaded ------ cmsd [log in to unmask]:1094 >> initialization failed. >> >> if I do 'ldd -r lib/libxrdoss.so' I indeed see few unresolved >> symbols in it. >> >> Cheers, >> Andy >> >> Fabrice Jammes wrote on 2015-03-13: >>> The way is to start a Qserv master and then a Qserv worker. cmsd will >>> then fails on the worker. There's a draft script which does that for >>> in2p3 cluster here: https://github.com/lsst/qserv/blob/u/fjammes/DM- >>> 213/admin/tools/cluster/cc-in2p3/install-puppet-node.sh You can cut and >>> paste the configuration part from this one (but not the install part >>> which is based on in2p3 shared fs) >>> >>> You also have to install/setup xrootd built in debug mode if you want >>> to debug the produced core dump: eups distrib install xrootd xssi-1.0.0 >>> >>> Please let me know. Vaikunth is installing multi-node Qserv at NCSA, >>> so he may have additional informations. >>> >>> I hope your in2p3 account will be ready soon. The Qserv setup is >>> already done here. >>> >>> Thanks, >>> >>> On 03/13/2015 07:04 AM, Salnikov, Andrei A. wrote: >>>> Hi Fabrice, >>>> >>>> I'd like to reproduce it to understand exactly what happens, >>>> is there a way to repeat it on NCSA machines? >>>> >>>> Cheers, >>>> Andy >>>> >>>> >>>> Fabrice Jammes wrote on 2015-03-13: >>>>> Hi Andy, >>>>> >>>>> cmsd crash happen when starting worker node. I can easily test the >>>>> fix if needed. It is blocking for in2p3 cluster install. >>>>> >>>>> Cheers, >>>>> >>>>> On 03/12/2015 11:04 PM, Salnikov, Andrei A. wrote: >>>>>> Fabrice, can you tell me what did you do to make it crash? >>>>>> >>>>>> Cheers, >>>>>> Andy >>>>>> >>>>>> >>>>>> Andrew Hanushevsky wrote on 2015-03-12: >>>>>>> Hi Andy, >>>>>>> >>>>>>> Just run what Fabrice ran and it will core right away since >>>>>>> XrdSysError wasn't told about XrdSysLogger and eventually the >>>>>>> message is routed to that object. >>>>>>> >>>>>>> Andy >>>>>>> >>>>>>> On Fri, 13 Mar 2015, Salnikov, Andrei A. wrote: >>>>>>> >>>>>>>> Hi Andy, >>>>>>>> >>>>>>>> I'm confused, the little piece of code below is the fix, right? >>>>>>>> Is it possible for me to reproduce crash? I'll try to remember >>>>>>>> tomorrow what I did for logging, maybe I could see it better. >>>>>>>> >>>>>>>> Cheers, >>>>>>>> Andy >>>>>>>> >>>>>>>> >>>>>>>> Andrew Hanushevsky wrote on 2015-03-12: >>>>>>>>> Hi Andy, >>>>>>>>> >>>>>>>>> I don't think there is a fix for this. Could you fix it? I >>>>>>>>> already have a Jira entry for rewriting that portion of the code >>>>>>>>> once I get a handle on how to deal with the repo. >>>>>>>>> >>>>>>>>> Andy >>>>>>>>> >>>>>>>>> On Thu, 12 Mar 2015, Salnikov, Andrei A. wrote: >>>>>>>>> >>>>>>>>>> Hi Andy, >>>>>>>>>> >>>>>>>>>> sorry for the mess I created. I do not remember exactly what is >>>>>>>>>> involved there, but if you say that it fixes it then I'm happy. >>>>>>>>>> Are you going to make that fix or do you want me to do it? Is >>>>>>>>>> there a ticket for it already? >>>>>>>>>> >>>>>>>>>> Cheers, >>>>>>>>>> Andy >>>>>>>>>> >>>>>>>>>> Andrew Hanushevsky wrote on 2015-03-12: >>>>>>>>>>> Hi Andy, >>>>>>>>>>> >>>>>>>>>>> Daniel told me that you did the log4cxx integration for this >>>>>>>>>>> part of qserv. Unfortunately, the underlying xrootd object >>>>>>>>>>> that send messages to the log was not initialized when the >>>>>>>>>>> XrdOssGetSS(Logger, ...) is called. This results in a SEGV >>>>>>>>>>> when a message is issued. I know this is old code and now >>>>>>>>>>> there is a better way of doing all of this (and I will do that >>>>>>>>>>> later) for now the way to fix this is simply insert this code >>>>>>>>>>> snippedin the initalization section: >>>>>>>>>>> >>>>>>>>>>> #include "XrdSys/XrdSysError.hh" >>>>>>>>>>> >>>>>>>>>>> namespace XrdSsi >>>>>>>>>>> { >>>>>>>>>>> extern XrdSysError Log; >>>>>>>>>>> }; >>>>>>>>>>> >>>>>>>>>>> XrdSsi::Log.logger(Logger); // Logger is the arg in >>>>>>>>>>> XrdOssGetSS() >>>>>>>>>>> >>>>>>>>>>> OK? Like I said this will become far simpler on the next >>>>>>>>>>> iteration. >>>>>>>>>>> >>>>>>>>>>> Andy >>>>>>>>>>> >>>>>>>>>>> ---------- Forwarded message ---------- >>>>>>>>>>> Date: Thu, 12 Mar 2015 14:14:12 -0700 >>>>>>>>>>> From: Fabrice Jammes <[log in to unmask]> >>>>>>>>>>> To: Andrew Hanushevsky <[log in to unmask]> >>>>>>>>>>> Subject: cmsd core log >>>>>>>>>>> >>>>>>>>>>> Hi Andy, >>>>>>>>>>> >>>>>>>>>>> We introduced logging in this module a few months ago but our >>>>>>>>>>> mono-node integration test doesn't launch cmsd, so it was >>>>>>>>>>> never tested. It may be our logging library (lsst::log which >>>>>>>>>>> relies on log4cxx) which is faulty? >>>>>>>>>>> >>>>>>>>>>> Thanks, >>>>>>>>>>> >>>>>>>>>>> Fabrice >>>>>>>>>>> >>>>>>>>>>> Program terminated with signal 11, Segmentation fault. #0 >>>>>>>>>>> 0x00007fdb86a9fc10 in pthread_mutex_lock () from >>>>>>>>>>> /lib64/libpthread.so.0 Missing separate debuginfos, use: >>>>>>>>>>> debuginfo-install expat-2.1.0- 8.el7.x86_64 >>>>>>>>>>> glibc-2.17-55.el7_0.5.x86_64 keyutils-libs-1.5.8-3.el7.x86_64 >>>>>>>>>>> krb5-libs-1.11.3-49.el7.x86_64 libcom_err-1.42.9-4.el7.x86_64 >>>>>>>>>>> libgcc-4.8.2-16.2.el7_0.x86_64 libicu-50.1.2-11.el7.x86_64 >>>>>>>>>>> libselinux-2.2.2-6.el7.x86_64 >>>>>>>>>>> libstdc++-4.8.2-16.2.el7_0.x86_64 >>>>>>>>>>> nss-softokn-freebl-3.16.2.3-1.el7_0.x86_64 >>>>>>>>>>> openssl-libs-1.0.1e-34.el7_0.7.x86_64 pcre-8.32-12.el7.x86_64 >>>>>>>>>>> xz-libs-5.1.2-9alpha.el7.x86_64 zlib-1.2.7-13.el7.x86_64 (gdb) >>>>>>>>>>> where #0 0x00007fdb86a9fc10 in pthread_mutex_lock () from >>>>>>>>>>> /lib64/libpthread.so.0 #1 0x000000000041ed54 in >>>>>>>>>>> XrdSysMutex::Lock (this=0x10) at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/./XrdSys/XrdSysPthread.hh:149 #2 >>>>>>>>>>> 0x00007fdb86ceb2e6 in XrdSysLogger::Put (this=0x0, iovcnt=2, >>>>>>>>>>> iov=0x7fff589f1800) at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/XrdSys/XrdSysLogger.cc:270 #3 >>>>>>>>>>> 0x00007fdb86cea817 in XrdSysError::Say (this=0x7fdb7f3aa7e0 >>>>>>>>>>> <XrdSsi::Log>, txt1=0x1f1efb8 "0312 20:09:50.451 >>>>>>>>>>> [0x7fdb87464740] INFO QservOss (build/xrdoss/QservOss.cc:260) >>>>>>>>>>> - QservOss Init", txt2=0x0, >>>>>>>>>>> txt3=0x0, txt4=0x0, txt5=0x0, txt6=txt6@entry=0x0) at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/XrdSys/XrdSysError.cc:163 #4 >>>>>>>>>>> 0x00007fdb7f19e638 in XrdSsiLogger::Msg (pfx=<optimized out>, >>>>>>>>>>> txt1=<optimized out>, txt2=<optimized out>, txt3=<optimized >>>>>>>>>>> out>) >>>>>>>>>>> at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-4.0.0rc3- >>>>>>>>> qsClient2.lsst1/xrootd- >>>>>>>>>>> 4.0.0rc3-qsClient2.lsst1/src/XrdSsi/XrdSsiLogger.cc:66 #5 >>>>>>>>>>> 0x00007fdb84f38a0d in lsst::qserv::wlog::XrootdAppender::append >>>>>>>>>>> (this=0x1f2b9e0, event=..., p=...) at >>>>> build/wlog/XrootdAppender.cc:57 >>>>>>>>> #6 >>>>>>>>>>> 0x00007fdb841ebd1e in log4cxx::AppenderSkeleton::doAppend >>>>>>>>>>> (this=0x1f2b9e0, event=..., pool1=...) at >>>>>>>>>>> appenderskeleton.cpp:142 #7 0x00007fdb841e9df4 in >>>>>>>>>>> log4cxx::helpers::AppenderAttachableImpl::appendLoopOnAppenders >>>>>>>>>>> (this=0x1f2bd20, event=..., p=...) at >>>>>>>>>>> appenderattachableimpl.cpp:69 #8 0x00007fdb8422f6d5 in >>>>>>>>>>> log4cxx::Logger::callAppenders (this=this@entry=0x1f2bd90, >>>>>>>>>>> event=..., p=...) at logger.cpp:93 #9 0x00007fdb8422fa1f in >>>>>>>>>>> log4cxx::Logger::forcedLog (this=0x1f2bd90, level1=..., >>>>>>>>>>> message="QservOss Init", location=...) at logger.cpp:124 #10 >>>>>>>>>>> 0x00007fdb84500412 in lsst::log::Log::vlog (logger=..., >>>>>>>>>>> level=..., filename="build/xrdoss/QservOss.cc", >>>>>>>>>>> funcname="virtual int >>>>>>>>>>> lsst::qserv::xrdoss::QservOss::Init(XrdSysLogger*, const >>>>> char*)", >>>>>>>>>>> lineno=lineno@entry=260, fmt=fmt@entry=0x7fdb84f5a7bb >>>>> "QservOss >>>>>>>>>>> Init", args=args@entry=0x7fff589f2018) at src/Log.cc:357 #11 >>>>>>>>>>> 0x00007fdb84500734 in lsst::log::Log::log (logger=..., >>>>>>>>>>> level=..., filename="build/xrdoss/QservOss.cc", >>>>>>>>>>> funcname="virtual int >>>>>>>>>>> lsst::qserv::xrdoss::QservOss::Init(XrdSysLogger*, const >>>>>>>>>>> char*)", lineno=260, >>>>>>>>>>> fmt=0x7fdb84f5a7bb "QservOss Init") at src/Log.cc:386 >>>>>>>>>>> #12 0x00007fdb84f4e4ac in lsst::qserv::xrdoss::QservOss::Init >>>>>>>>>>> (this=0x1f1fab0, log=0x0, cfgFn=0x0) at >>>>>>>>>>> build/xrdoss/QservOss.cc:260 #13 0x00007fdb84f4d4f7 in >>>>>>>>>>> lsst::qserv::xrdoss::QservOss::QservOss รง(this=0x1f1fab0) at >>>>>>>>>>> build/xrdoss/QservOss.cc:135 #14 0x00007fdb84f4d2f4 in >>>>>>>>>>> lsst::qserv::xrdoss::QservOss::getInstance () at >>>>>>>>>>> build/xrdoss/QservOss.cc:101 #15 0x00007fdb84f4e8f8 in >>>>>>>>>>> XrdOssGetStorageSystem (native_oss=0x7fdb87253100 >>>>>>>>>>> <XrdOssGetSS(XrdSysLogger*, char const*, char const*, char >>>>>>>>>>> const*, XrdOucEnv*, XrdVersionInfo&)::myOssSys>, >>>>>>>>>>> Logger=0x65b3b8 <XrdMain::Config+248>, > config_fn=0x1efec40 >>>>>>>>>>> "/qserv/qserv-run/etc/lsp.cf", parms=0x0) at >>>>>>>>>>> build/xrdoss/QservOss.cc:293 #16 0x00007fdb86ff484d in >>>>>>>>>>> XrdOssGetSS (Logger=0x65b3b8 <XrdMain::Config+248>, >>>>>>>>>>> config_fn=0x1efec40 "/qserv/qserv-run/etc/lsp.cf", >>>>>>>>>>> OssLib=0x1efef70 "libxrdoss.so", OssParms=0x0, envP=0x0, >>>>>>>>>>> urVer=...) >>>>>>>>>>> at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/XrdOss/XrdOssApi.cc:135 #17 0x000000000042f08d >>>>>>>>>>> in XrdCmsConfig::ConfigOSS (this=0x65d340 <XrdCms::Config>) at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/XrdCms/XrdCmsConfig.cc:777 #18 >>>>>>>>>>> 0x000000000042dbc8 in XrdCmsConfig::Configure2 (this=0x65d340 >>>>>>>>>>> <XrdCms::Config>) at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/XrdCms/XrdCmsConfig.cc:408 #19 >>>>>>>>>>> 0x0000000000443754 in XrdgetProtocol (pname=0x1eef920 "cmsd", >>>>>>>>>>> parms=0x0, pi=0x65b2c0 <XrdMain::Config>) >>>>>>>>>>> at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/XrdCms/XrdCmsProtocol.cc:121 #20 >>>>>>>>>>> 0x000000000041de24 in XrdProtLoad::getProtocol (lname=0x0, >>>>>>>>>>> pname=0x1eef920 "cmsd", parms=0x0, pi=0x65b2c0 >>>>>>>>>>> <XrdMain::Config>) >>>>>>>>>>> at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/Xrd/XrdProtLoad.cc:247 #21 0x000000000041d8b4 >>>>>>>>>>> in XrdProtLoad::Load (lname=0x0, pname=0x1eef920 "cmsd", >>>>>>>>>>> parms=0x0, pi=0x65b2c0 <XrdMain::Config>) >>>>>>>>>>> at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/Xrd/XrdProtLoad.cc:101 #22 0x000000000041a5b7 >>>>>>>>>>> in XrdConfig::Setup (this=0x65b2c0 <XrdMain::Config>, >>>>>>>>>>> dfltp=0x7fff589f3d4e "cmsd") at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/Xrd/XrdConfig.cc:1028 #23 0x00000000004187de >>>>>>>>>>> in XrdConfig::Configure (this=0x65b2c0 <XrdMain::Config>, >>>>>>>>>>> argc=9, argv=0x7fff589f3318) at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/Xrd/XrdConfig.cc:509 #24 0x000000000041f13b in >>>>>>>>>>> main (argc=9, argv=0x7fff589f3318) at >>>>>>>>>>> /qserv/stack/EupsBuildDir/Linux64/xrootd-xssi-1.0.0/xrootd- >>>>>>>>>>> xssi- 1.0.0/src/Xrd/XrdMain.cc:179 >>>> >>>> >>>> ###################################################################### >>>> ## Use REPLY-ALL to reply to list >>>> >>>> To unsubscribe from the QSERV-L list, click the following link: >>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=QSERV-L&A=1 >> > ######################################################################## Use REPLY-ALL to reply to list To unsubscribe from the QSERV-L list, click the following link: https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=QSERV-L&A=1