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Author: [log in to unmask]
Date: Sun Feb 28 16:37:22 2016
New Revision: 4263

Log:
[HPSJAVA-660] Revert DefaultParser back to deprecated PosixParser (new parser does not accept spaces before arguments).

Modified:
    java/trunk/analysis/src/main/java/org/hps/analysis/plots/AddPlots.java
    java/trunk/conditions/src/main/java/org/hps/conditions/cli/AbstractCommand.java
    java/trunk/conditions/src/main/java/org/hps/conditions/cli/CommandLineTool.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/MotorPositionLoader.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtBiasConditionsLoader.java
    java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsLoader.java
    java/trunk/crawler/src/main/java/org/hps/crawler/DatacatAddFile.java
    java/trunk/crawler/src/main/java/org/hps/crawler/DatacatCrawler.java
    java/trunk/crawler/src/main/java/org/hps/crawler/MetadataWriter.java
    java/trunk/evio/src/main/java/org/hps/evio/BasicEvioFileReader.java
    java/trunk/monitoring-app/src/main/java/org/hps/monitoring/application/Main.java
    java/trunk/record-util/src/main/java/org/hps/record/evio/EvioEventSkimmer.java
    java/trunk/record-util/src/main/java/org/hps/record/evio/EvioFileProducer.java
    java/trunk/run-database/src/main/java/org/hps/run/database/RunDatabaseCommandLine.java
    java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java
    java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildMillepedeCompact.java
    java/trunk/tracking/src/main/java/org/hps/svt/alignment/MillepedeCompactDump.java
    java/trunk/users/src/main/java/org/hps/users/jeremym/EvioFileScanner.java
    java/trunk/users/src/main/java/org/hps/users/meeg/FilterMCBunches.java
    java/trunk/users/src/main/java/org/hps/users/meeg/MergeMCBunches.java
    java/trunk/users/src/main/java/org/hps/users/meeg/SvtChargeIntegrator.java
    java/trunk/users/src/main/java/org/hps/users/omoreno/LheToStdhep.java
    java/trunk/users/src/main/java/org/hps/users/phansson/testrun/dataMCPlots.java
    java/trunk/users/src/main/java/org/hps/users/phansson/testrun/ecalPlots.java
    java/trunk/users/src/main/java/org/hps/users/phansson/testrun/trigRate.java
    java/trunk/users/src/main/java/org/hps/users/phansson/tools/DumpAIDATextFiles.java
    java/trunk/users/src/main/java/org/hps/users/phansson/tools/mergeSimpleAIDA.java
    java/trunk/util/src/main/java/org/hps/util/CalculateAcceptanceFromMadGraph.java
    java/trunk/util/src/main/java/org/hps/util/ConvertToStdhep.java
    java/trunk/util/src/main/java/org/hps/util/DumpLHEEventsToASCII.java

Modified: java/trunk/analysis/src/main/java/org/hps/analysis/plots/AddPlots.java
 =============================================================================
--- java/trunk/analysis/src/main/java/org/hps/analysis/plots/AddPlots.java	(original)
+++ java/trunk/analysis/src/main/java/org/hps/analysis/plots/AddPlots.java	Sun Feb 28 16:37:22 2016
@@ -15,7 +15,7 @@
 import java.util.logging.Logger;
 
 import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.lcsim.util.aida.AIDA;
@@ -43,7 +43,7 @@
     }
     
     public static void main(String[] args) throws Exception {
-        CommandLine cl = new DefaultParser().parse(OPTIONS, args);        
+        CommandLine cl = new PosixParser().parse(OPTIONS, args);        
         if (cl.getArgList().isEmpty()) {
             throw new RuntimeException("No input AIDA files to add.");
         }        

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/cli/AbstractCommand.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/cli/AbstractCommand.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/cli/AbstractCommand.java	Sun Feb 28 16:37:22 2016
@@ -1,7 +1,7 @@
 package org.hps.conditions.cli;
 
 import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
@@ -32,7 +32,7 @@
     /**
      * The parser for the options.
      */
-    private final DefaultParser parser = new DefaultParser();
+    private final PosixParser parser = new PosixParser();
 
     /**
      * Class constructor.

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/cli/CommandLineTool.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/cli/CommandLineTool.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/cli/CommandLineTool.java	Sun Feb 28 16:37:22 2016
@@ -11,7 +11,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.hps.conditions.database.DatabaseConditionsManager;
 import org.lcsim.conditions.ConditionsManager.ConditionsNotFoundException;
 
@@ -79,7 +79,7 @@
     /**
      * The options parser.
      */
-    private final DefaultParser parser = new DefaultParser();
+    private final PosixParser parser = new PosixParser();
 
     /**
      * Exit with the given status.

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/MotorPositionLoader.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/MotorPositionLoader.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/MotorPositionLoader.java	Sun Feb 28 16:37:22 2016
@@ -16,7 +16,7 @@
 import org.apache.commons.cli.CommandLine;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 
 /**
  * Load SVT motor positions from a MYA dump, figure out time ranges (same position for > 10 seconds), and then convert
@@ -195,7 +195,7 @@
      */
     void run(final String args[]) {
 
-        final DefaultParser parser = new DefaultParser();
+        final PosixParser parser = new PosixParser();
 
         CommandLine cl = null;
         try {

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtBiasConditionsLoader.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtBiasConditionsLoader.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtBiasConditionsLoader.java	Sun Feb 28 16:37:22 2016
@@ -23,7 +23,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.hps.conditions.api.ConditionsRecord;
 import org.hps.conditions.database.DatabaseConditionsManager;
 import org.hps.conditions.run.RunRange;
@@ -176,7 +176,7 @@
 //        options.addOption(new Option("b", true, "beam current file"));
         options.addOption(new Option("s", false, "Show plots"));
 
-        final CommandLineParser parser = new DefaultParser();
+        final CommandLineParser parser = new PosixParser();
         CommandLine cl = null;
         try {
             cl = parser.parse(options, args);

Modified: java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsLoader.java
 =============================================================================
--- java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsLoader.java	(original)
+++ java/trunk/conditions/src/main/java/org/hps/conditions/svt/SvtConditionsLoader.java	Sun Feb 28 16:37:22 2016
@@ -8,7 +8,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.hps.conditions.api.ConditionsRecord;
 import org.hps.conditions.api.TableMetaData;
 import org.hps.conditions.database.DatabaseConditionsManager;
@@ -60,7 +60,7 @@
         final Options options = setupCommandLineOptions();
 
         // Parse the command line arguments
-        final CommandLineParser parser = new DefaultParser();
+        final CommandLineParser parser = new PosixParser();
         final CommandLine commandLine;
         try {
             commandLine = parser.parse(options, args);

Modified: java/trunk/crawler/src/main/java/org/hps/crawler/DatacatAddFile.java
 =============================================================================
--- java/trunk/crawler/src/main/java/org/hps/crawler/DatacatAddFile.java	(original)
+++ java/trunk/crawler/src/main/java/org/hps/crawler/DatacatAddFile.java	Sun Feb 28 16:37:22 2016
@@ -6,7 +6,7 @@
 import java.util.logging.Logger;
 
 import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
@@ -55,7 +55,7 @@
     /**
      * The options parser.
      */
-    private final DefaultParser parser = new DefaultParser();
+    private final PosixParser parser = new PosixParser();
     
     /**
      * Parse command line options.

Modified: java/trunk/crawler/src/main/java/org/hps/crawler/DatacatCrawler.java
 =============================================================================
--- java/trunk/crawler/src/main/java/org/hps/crawler/DatacatCrawler.java	(original)
+++ java/trunk/crawler/src/main/java/org/hps/crawler/DatacatCrawler.java	Sun Feb 28 16:37:22 2016
@@ -13,7 +13,7 @@
 import java.util.logging.Logger;
 
 import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
@@ -83,7 +83,7 @@
     /**
      * The options parser.
      */
-    private final DefaultParser parser = new DefaultParser();
+    private final PosixParser parser = new PosixParser();
     
     /**
      * Parse command line options.

Modified: java/trunk/crawler/src/main/java/org/hps/crawler/MetadataWriter.java
 =============================================================================
--- java/trunk/crawler/src/main/java/org/hps/crawler/MetadataWriter.java	(original)
+++ java/trunk/crawler/src/main/java/org/hps/crawler/MetadataWriter.java	Sun Feb 28 16:37:22 2016
@@ -9,7 +9,7 @@
 import java.util.logging.Logger;
 
 import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
@@ -39,7 +39,7 @@
     private MetadataWriter parse(final String[] args) {
         
         try { 
-            final CommandLine cl = new DefaultParser().parse(OPTIONS, args);
+            final CommandLine cl = new PosixParser().parse(OPTIONS, args);
 
             // Print help.
             if (cl.hasOption("h") || args.length == 0) {

Modified: java/trunk/evio/src/main/java/org/hps/evio/BasicEvioFileReader.java
 =============================================================================
--- java/trunk/evio/src/main/java/org/hps/evio/BasicEvioFileReader.java	(original)
+++ java/trunk/evio/src/main/java/org/hps/evio/BasicEvioFileReader.java	Sun Feb 28 16:37:22 2016
@@ -8,7 +8,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.hps.record.evio.EvioEventUtilities;
 import org.hps.record.triggerbank.AbstractIntData.IntBankDefinition;
 import org.hps.record.triggerbank.HeadBankData;
@@ -33,7 +33,7 @@
         if (args.length == 0) {
             printUsage(options);
         }
-        final CommandLineParser parser = new DefaultParser();
+        final CommandLineParser parser = new PosixParser();
         CommandLine cl = null;
         try {
             cl = parser.parse(options, args);

Modified: java/trunk/monitoring-app/src/main/java/org/hps/monitoring/application/Main.java
 =============================================================================
--- java/trunk/monitoring-app/src/main/java/org/hps/monitoring/application/Main.java	(original)
+++ java/trunk/monitoring-app/src/main/java/org/hps/monitoring/application/Main.java	Sun Feb 28 16:37:22 2016
@@ -8,7 +8,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.hps.monitoring.application.model.Configuration;
 
 /**
@@ -29,7 +29,7 @@
         final Options options = new Options();
         options.addOption(new Option("h", false, "Print help."));
         options.addOption(new Option("c", true, "Load a properties file with configuration parameters."));
-        final CommandLineParser parser = new DefaultParser();
+        final CommandLineParser parser = new PosixParser();
 
         // Parse command line arguments.
         final CommandLine cl;

Modified: java/trunk/record-util/src/main/java/org/hps/record/evio/EvioEventSkimmer.java
 =============================================================================
--- java/trunk/record-util/src/main/java/org/hps/record/evio/EvioEventSkimmer.java	(original)
+++ java/trunk/record-util/src/main/java/org/hps/record/evio/EvioEventSkimmer.java	Sun Feb 28 16:37:22 2016
@@ -14,7 +14,7 @@
 import org.apache.commons.cli.CommandLine;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.jlab.coda.jevio.EventWriter;
 import org.jlab.coda.jevio.EvioEvent;
 import org.jlab.coda.jevio.EvioReader;
@@ -51,7 +51,7 @@
      */
     public static void main(String[] args) {
 
-        DefaultParser parser = new DefaultParser();
+        PosixParser parser = new PosixParser();
 
         CommandLine commandLine = null;
         try {

Modified: java/trunk/record-util/src/main/java/org/hps/record/evio/EvioFileProducer.java
 =============================================================================
--- java/trunk/record-util/src/main/java/org/hps/record/evio/EvioFileProducer.java	(original)
+++ java/trunk/record-util/src/main/java/org/hps/record/evio/EvioFileProducer.java	Sun Feb 28 16:37:22 2016
@@ -16,7 +16,7 @@
 import org.apache.commons.cli.CommandLine;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.jlab.coda.et.EtAttachment;
 import org.jlab.coda.et.EtConstants;
 import org.jlab.coda.et.EtEvent;
@@ -195,7 +195,7 @@
     public void run(final String[] args) {
 
         // Command line parser.
-        final DefaultParser parser = new DefaultParser();
+        final PosixParser parser = new PosixParser();
 
         try {
 

Modified: java/trunk/run-database/src/main/java/org/hps/run/database/RunDatabaseCommandLine.java
 =============================================================================
--- java/trunk/run-database/src/main/java/org/hps/run/database/RunDatabaseCommandLine.java	(original)
+++ java/trunk/run-database/src/main/java/org/hps/run/database/RunDatabaseCommandLine.java	Sun Feb 28 16:37:22 2016
@@ -4,7 +4,7 @@
 import java.net.URISyntaxException;
 
 import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
@@ -119,7 +119,7 @@
      */
     private RunDatabaseCommandLine parse(final String args[]) {
         try {
-            final CommandLine cl = new DefaultParser().parse(OPTIONS, args);
+            final CommandLine cl = new PosixParser().parse(OPTIONS, args);
 
             // Print help and exit.
             if (cl.hasOption("h") || args.length == 0) {

Modified: java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildCompact.java	Sun Feb 28 16:37:22 2016
@@ -23,7 +23,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 
 import org.jdom.Document;
 import org.jdom.Element;
@@ -156,7 +156,7 @@
 			printHelpAndExit(options);
 		}
 
-		CommandLineParser parser = new DefaultParser();
+		CommandLineParser parser = new PosixParser();
 		CommandLine cl = null;
 		try {
 			cl = parser.parse(options, args);

Modified: java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildMillepedeCompact.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildMillepedeCompact.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/svt/alignment/BuildMillepedeCompact.java	Sun Feb 28 16:37:22 2016
@@ -29,7 +29,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.hps.recon.tracking.CoordinateTransformations;
 import org.jdom.Attribute;
 import org.jdom.DataConversionException;
@@ -85,7 +85,7 @@
 			printHelpAndExit(options);
 		}
 
-		CommandLineParser parser = new DefaultParser();
+		CommandLineParser parser = new PosixParser();
 		CommandLine cl = null;
 		try {
 			cl = parser.parse(options, args);

Modified: java/trunk/tracking/src/main/java/org/hps/svt/alignment/MillepedeCompactDump.java
 =============================================================================
--- java/trunk/tracking/src/main/java/org/hps/svt/alignment/MillepedeCompactDump.java	(original)
+++ java/trunk/tracking/src/main/java/org/hps/svt/alignment/MillepedeCompactDump.java	Sun Feb 28 16:37:22 2016
@@ -15,7 +15,7 @@
 
 import org.apache.commons.cli.CommandLine;
 import org.apache.commons.cli.CommandLineParser;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
@@ -54,7 +54,7 @@
 			printHelpAndExit(options);
 		}
 
-		CommandLineParser parser = new DefaultParser();
+		CommandLineParser parser = new PosixParser();
 		CommandLine cl = null;
 		try {
 			cl = parser.parse(options, args);

Modified: java/trunk/users/src/main/java/org/hps/users/jeremym/EvioFileScanner.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/jeremym/EvioFileScanner.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/jeremym/EvioFileScanner.java	Sun Feb 28 16:37:22 2016
@@ -28,7 +28,7 @@
 import org.apache.commons.cli.CommandLine;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.hps.conditions.database.ConnectionParameters;
 import org.hps.record.evio.EvioEventConstants;
 import org.hps.record.evio.EvioEventUtilities;
@@ -484,7 +484,7 @@
 
     final Set<Integer> acceptRuns = new HashSet<Integer>();
 
-    final DefaultParser parser = new DefaultParser();
+    final PosixParser parser = new PosixParser();
 
     boolean printSummary = false;
 

Modified: java/trunk/users/src/main/java/org/hps/users/meeg/FilterMCBunches.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/meeg/FilterMCBunches.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/meeg/FilterMCBunches.java	Sun Feb 28 16:37:22 2016
@@ -17,7 +17,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.MCParticle;
 import org.lcsim.event.RawCalorimeterHit;
@@ -70,7 +70,7 @@
     public static void main(String[] args) {
         // Set up command line parsing.
         Options options = createCommandLineOptions();
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
 
         // Parse command line arguments.
         CommandLine cl = null;

Modified: java/trunk/users/src/main/java/org/hps/users/meeg/MergeMCBunches.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/meeg/MergeMCBunches.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/meeg/MergeMCBunches.java	Sun Feb 28 16:37:22 2016
@@ -13,7 +13,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.lcsim.event.EventHeader;
 import org.lcsim.event.MCParticle;
 import org.lcsim.event.SimCalorimeterHit;
@@ -49,7 +49,7 @@
     public static void main(String[] args) {
         // Set up command line parsing.
         Options options = createCommandLineOptions();
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
 
         // Parse command line arguments.
         CommandLine cl = null;
@@ -191,4 +191,4 @@
             throw new RuntimeException(e);
         }
     }
-}
+}

Modified: java/trunk/users/src/main/java/org/hps/users/meeg/SvtChargeIntegrator.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/meeg/SvtChargeIntegrator.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/meeg/SvtChargeIntegrator.java	Sun Feb 28 16:37:22 2016
@@ -12,7 +12,7 @@
 import java.util.logging.Logger;
 import org.apache.commons.cli.CommandLine;
 import org.apache.commons.cli.CommandLineParser;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
@@ -50,7 +50,7 @@
         options.addOption(new Option("t", false, "use TI timestamp instead of Unix time (higher precision, but requires TI time offset in run DB)"));
         options.addOption(new Option("c", false, "get TI time offset from CSV log file instead of run DB"));
 
-        final CommandLineParser parser = new DefaultParser();
+        final CommandLineParser parser = new PosixParser();
         CommandLine cl = null;
         try {
             cl = parser.parse(options, args);

Modified: java/trunk/users/src/main/java/org/hps/users/omoreno/LheToStdhep.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/omoreno/LheToStdhep.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/omoreno/LheToStdhep.java	Sun Feb 28 16:37:22 2016
@@ -15,7 +15,7 @@
 import org.apache.commons.cli.CommandLineParser;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.jdom.Document;
 import org.jdom.Element;
 import org.jdom.JDOMException;
@@ -58,7 +58,7 @@
 		String stdhepFileName = "output.stdhep";
 		
 		// Instantiate te command line parser
-		CommandLineParser parser = new DefaultParser(); 
+		CommandLineParser parser = new PosixParser(); 
 
 		// Create the Options
 		// TODO: Add ability to parse list of files.

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/testrun/dataMCPlots.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/testrun/dataMCPlots.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/testrun/dataMCPlots.java	Sun Feb 28 16:37:22 2016
@@ -25,7 +25,7 @@
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.lcsim.util.aida.AIDA;
 
 /**
@@ -93,7 +93,7 @@
             help.printHelp(" ", opts);
             System.exit(1);
         }
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
         CommandLine cmd=null;
         try {
             cmd = parser.parse(opts, args);

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/testrun/ecalPlots.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/testrun/ecalPlots.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/testrun/ecalPlots.java	Sun Feb 28 16:37:22 2016
@@ -19,7 +19,7 @@
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 
 /**
  *
@@ -72,7 +72,7 @@
             help.printHelp(" ", opts);
             System.exit(1);
         }
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
         CommandLine cmd=null;
         try {
             cmd = parser.parse(opts, args);

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/testrun/trigRate.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/testrun/trigRate.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/testrun/trigRate.java	Sun Feb 28 16:37:22 2016
@@ -17,7 +17,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 
 /**
  *
@@ -73,7 +73,7 @@
             help.printHelp(" ", options);
             System.exit(1);
         }
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
         
         CommandLine cl = null;
         try {

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/tools/DumpAIDATextFiles.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/tools/DumpAIDATextFiles.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/tools/DumpAIDATextFiles.java	Sun Feb 28 16:37:22 2016
@@ -21,7 +21,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 
 /**
  *
@@ -116,7 +116,7 @@
             help.printHelp(" ", options);
             System.exit(1);
         }
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
         CommandLine cl = null;
         try {
             cl = parser.parse(options, args);

Modified: java/trunk/users/src/main/java/org/hps/users/phansson/tools/mergeSimpleAIDA.java
 =============================================================================
--- java/trunk/users/src/main/java/org/hps/users/phansson/tools/mergeSimpleAIDA.java	(original)
+++ java/trunk/users/src/main/java/org/hps/users/phansson/tools/mergeSimpleAIDA.java	Sun Feb 28 16:37:22 2016
@@ -20,7 +20,7 @@
 import org.apache.commons.cli.HelpFormatter;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.lcsim.util.aida.AIDA;
 
 /**
@@ -52,7 +52,7 @@
             help.printHelp(" ", opts);
             System.exit(1);
         }
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
         CommandLine cmd = null;
         try {
             cmd = parser.parse(opts, args);

Modified: java/trunk/util/src/main/java/org/hps/util/CalculateAcceptanceFromMadGraph.java
 =============================================================================
--- java/trunk/util/src/main/java/org/hps/util/CalculateAcceptanceFromMadGraph.java	(original)
+++ java/trunk/util/src/main/java/org/hps/util/CalculateAcceptanceFromMadGraph.java	Sun Feb 28 16:37:22 2016
@@ -21,7 +21,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.lcsim.fit.helicaltrack.HelixParamCalculator;
 
 public class CalculateAcceptanceFromMadGraph {
@@ -165,7 +165,7 @@
         // Set up command line parsing.
         Options options = createCommandLineOptions();
 
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
 
         // Parse command line arguments.
         CommandLine cl = null;

Modified: java/trunk/util/src/main/java/org/hps/util/ConvertToStdhep.java
 =============================================================================
--- java/trunk/util/src/main/java/org/hps/util/ConvertToStdhep.java	(original)
+++ java/trunk/util/src/main/java/org/hps/util/ConvertToStdhep.java	Sun Feb 28 16:37:22 2016
@@ -31,7 +31,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.lcsim.detector.IRotation3D;
 import org.lcsim.detector.RotationGeant;
 
@@ -95,7 +95,7 @@
         // Set up command line parsing.
         Options options = createCommandLineOptions();
 
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
 
         // Parse command line arguments.
         CommandLine cl = null;

Modified: java/trunk/util/src/main/java/org/hps/util/DumpLHEEventsToASCII.java
 =============================================================================
--- java/trunk/util/src/main/java/org/hps/util/DumpLHEEventsToASCII.java	(original)
+++ java/trunk/util/src/main/java/org/hps/util/DumpLHEEventsToASCII.java	Sun Feb 28 16:37:22 2016
@@ -26,7 +26,7 @@
 import org.apache.commons.cli.Option;
 import org.apache.commons.cli.Options;
 import org.apache.commons.cli.ParseException;
-import org.apache.commons.cli.DefaultParser;
+import org.apache.commons.cli.PosixParser;
 import org.lcsim.detector.IRotation3D;
 import org.lcsim.detector.RotationGeant;
 
@@ -89,7 +89,7 @@
         // Set up command line parsing.
         Options options = createCommandLineOptions();
 
-        CommandLineParser parser = new DefaultParser();
+        CommandLineParser parser = new PosixParser();
 
         // Parse command line arguments.
         CommandLine cl = null;