I found that xrootd daemon occasionally crash (it is automatically restarted by systemd) and for problematic file mentioned below I can find core file that deals with this transfer (gdb) bt #0 XrdXrootdAioReq::sendError (this=0x2069cd8, tident=0x7fbcfc00a547 "condor.114208:47@[2001:718:401:6e03::1:82]") at /usr/src/debug/xrootd-4.9.1/src/XrdXrootd/XrdXrootdAio.cc:652 #1 0x00007fbd138c020c in XrdXrootdAioReq::endWrite (this=0x2069cd8) at /usr/src/debug/xrootd-4.9.1/src/XrdXrootd/XrdXrootdAio.cc:601 #2 0x00007fbd1365699f in XrdScheduler::Run (this=0x610e98 <XrdMain::Config+440>) at /usr/src/debug/xrootd-4.9.1/src/Xrd/XrdScheduler.cc:357 #3 0x00007fbd13656ae9 in XrdStartWorking (carg=<optimized out>) at /usr/src/debug/xrootd-4.9.1/src/Xrd/XrdScheduler.cc:87 #4 0x00007fbd13619617 in XrdSysThread_Xeq (myargs=0x7fbcfc010d20) at /usr/src/debug/xrootd-4.9.1/src/XrdSys/XrdSysPthread.cc:86 #5 0x00007fbd131ccdd5 in start_thread (arg=0x7fbd018fa700) at pthread_create.c:307 #6 0x00007fbd124cf02d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:111 http://novastore.farm.particle.cz/tmp/xrdcp-20190911/1M.20190911070503.057846787.thread_apply_all_bt Petr On 9/11/19 9:35 AM, Petr Vokac wrote: > Now I have following lines on all our DPM diskservers > ofs.trace write > xrootd.trace fs > and I created simple script [1] that use just xrdcp to copy 1MB file > CURR=$(date +%Y%m%d%H%M%S.%N) > export XRD_LOGLEVEL=Dump > export XRD_LOGMASK=All > export XRD_LOGFILE=1M.${CURR}.dump > xrdcp "file:///tmp/1M" "root://golias100.farm.particle.cz//dpm/farm.particle.cz/home/atlas/1M.xrdcp.${CURR}" > Even this simple code create corrupted files at our DPM storage, e.g. > following 1.5GB file > *[root@dpmpool1 ~]# ls -la > /mnt/fs1/atlas/2019-09-11/1M.xrdcp.20190911070503.057846787.143302.1568178311* > -rw-rw---- 1 dpmmgr dpmmgr 1761607680 Sep 11 07:05 /mnt/fs1/atlas/2019-09-11/1M.xrdcp.20190911070503.057846787.143302.1568178311 > *[root@dpmpool1 ~]# du --block-size=1 > /mnt/fs1/atlas/2019-09-11/1M.xrdcp.20190911070503.057846787.143302.1568178311* > 1048576 /mnt/fs1/atlas/2019-09-11/1M.xrdcp.20190911070503.057846787.143302.1568178311 > *[root@dpmpool1 ~]# grep condor.114208:47 > /var/log/xrootd/dpmdisk/xrootd.log* > 190911 07:05:12 31717 XrootdXeq: condor.114208:47@[2001:718:401:6e03::1:82] pub IP64 login as /DC=ch/DC=cern/OU=Organic Units/OU=Users/CN=vokac/CN=610071/CN=Petr Vokac > 190911 07:05:12 31717 condor.114208:47@[2001:718:401:6e03::1:82] XrootdProtocol: open unmat /dpm/farm.particle.cz/home/atlas/1M.xrdcp.20190911070503.057846787?dpm.chunk0=0,0,dpmpool1.farm.particle.cz:/mnt/fs1/atlas/2019-09-11/1M.xrdcp.20190911070503.057846787.143302.1568178311%3fsfn=%252Fdpm%252Ffarm.particle.cz%252Fhome%252Fatlas%252F1M.xrdcp.20190911070503.057846787&dpm.dhost=dpmpool1.farm.particle.cz&dpm.hv2=NBoSW+W5T7Eti/8yeLbu0w==&dpm.loc=1&dpm.nonce=870b737&dpm.put=1&dpm.time=1568178311&oss.asize=1048576 > 190911 07:05:12 31717 condor.114208:47@[2001:718:401:6e03::1:82] XrootdProtocol: fh=0 write 1048576@0 > 190911 07:05:20 23385 condor.114208:47@[2001:718:401:6e03::1:82] XrootdProtocol: close rc=0 fh=0 > 190911 07:05:20 23385 condor.114208:47@[2001:718:401:6e03::1:82] XrootdFile: closing w /dpm/farm.particle.cz/home/atlas/1M.xrdcp.20190911070503.057846787 > 190911 07:05:20 23385 XrootdXeq: condor.114208:47@[2001:718:401:6e03::1:82] disc 0:00:09 > Client side details are in attachment. I have more examples [2] with > following wrong size > 1M.20190911005425.364456793.bad ... Wed Sep 11 00:54:31 CEST 2019 ERROR BAD SIZE 1124073472 > 1M.20190911010555.932867187.bad ... Wed Sep 11 01:06:10 CEST 2019 ERROR BAD SIZE 0 > 1M.20190911012755.924566113.bad ... Wed Sep 11 01:28:08 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911014400.800640006.bad ... Wed Sep 11 01:44:24 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911014622.520944167.bad ... Wed Sep 11 01:46:40 CEST 2019 ERROR BAD SIZE 3741319168 > 1M.20190911014901.149846614.bad ... Wed Sep 11 01:49:26 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911015203.831921517.bad ... Wed Sep 11 01:52:29 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911020907.396911618.bad ... Wed Sep 11 02:09:32 CEST 2019 ERROR BAD SIZE 3791650816 > 1M.20190911021159.705868237.bad ... Wed Sep 11 02:12:27 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911021251.426135326.bad ... Wed Sep 11 02:13:13 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911021737.228623622.bad ... Wed Sep 11 02:18:01 CEST 2019 ERROR BAD SIZE 771751936 > 1M.20190911022813.246485614.bad ... Wed Sep 11 02:28:40 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911025601.833862548.bad ... Wed Sep 11 02:56:20 CEST 2019 ERROR BAD SIZE 1694498816 > 1M.20190911030159.405097568.bad ... Wed Sep 11 03:02:28 CEST 2019 ERROR BAD SIZE 5016387584 > 1M.20190911030913.965667783.bad ... Wed Sep 11 03:09:54 CEST 2019 ERROR BAD SIZE 218103808 > 1M.20190911030955.983267709.bad ... Wed Sep 11 03:10:01 CEST 2019 ERROR BAD SIZE 15946576 > 1M.20190911031027.126885413.bad ... Wed Sep 11 03:10:55 CEST 2019 ERROR BAD SIZE 1459617792 > 1M.20190911031535.972442346.bad ... Wed Sep 11 03:16:03 CEST 2019 ERROR BAD SIZE 24848976 > 1M.20190911032921.385479218.bad ... Wed Sep 11 03:29:37 CEST 2019 ERROR BAD SIZE 352321536 > 1M.20190911050741.513088940.bad ... Wed Sep 11 05:07:57 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911053936.964249354.bad ... Wed Sep 11 05:39:56 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911055721.511952376.bad ... Wed Sep 11 05:57:39 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911060520.998050566.bad ... Wed Sep 11 06:05:27 CEST 2019 ERROR BAD SIZE 2292134 > 1M.20190911061254.989202949.bad ... Wed Sep 11 06:13:20 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911062609.645848195.bad ... Wed Sep 11 06:26:21 CEST 2019 ERROR BAD SIZE 1207959552 > 1M.20190911063849.007385225.bad ... Wed Sep 11 06:38:55 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911063907.064936962.bad ... Wed Sep 11 06:39:15 CEST 2019 ERROR BAD SIZE 26413431 > 1M.20190911065351.412877379.bad ... Wed Sep 11 06:54:00 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911070503.057846787.bad ... Wed Sep 11 07:05:20 CEST 2019 ERROR BAD SIZE 1761607680 > 1M.20190911070525.814871895.bad ... Wed Sep 11 07:05:36 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911070634.781534227.bad ... Wed Sep 11 07:06:42 CEST 2019 ERROR BAD SIZE 3758096384 > 1M.20190911072040.275437982.bad ... Wed Sep 11 07:21:07 CEST 2019 ERROR BAD SIZE 786432 > 1M.20190911072340.253938152.bad ... Wed Sep 11 07:24:00 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911074911.208877064.bad ... Wed Sep 11 07:49:40 CEST 2019 ERROR BAD SIZE 388133552 > 1M.20190911080141.583691537.bad ... Wed Sep 11 08:01:56 CEST 2019 ERROR BAD SIZE 917504 > 1M.20190911082145.247040374.bad ... Wed Sep 11 08:22:17 CEST 2019 ERROR BAD SIZE 786432 > 1M.20190911085008.626914519.bad ... Wed Sep 11 08:50:29 CEST 2019 ERROR BAD SIZE 917504 > Petr > > [1] > http://novastore.farm.particle.cz/tmp/xrdcp-20190911/test_dpm_xroot_file_copy.sh > [2] http://novastore.farm.particle.cz/tmp/xrdcp-20190911/ > > On 9/10/19 2:12 AM, Andrew Hanushevsky wrote: >> Hi Petr, >> >> If you also specify in the config file >> >> xrootd.trace fs >> >> then we will get a much earlier snapshot of the offset and length. >> This will allow us to tell whether the data is getting corrupted >> before it reaches the server or afterward. Could you do that (at >> least for one test) to see where the corruption may happen? >> >> Andy >> >> *From:* Petr Vokac <mailto:[log in to unmask]> >> *Sent:* Sunday, September 08, 2019 1:46 AM >> *To:* andrea manzi <mailto:[log in to unmask]> ; >> [log in to unmask] <mailto:[log in to unmask]> ; Andrew >> Hanushevsky <mailto:[log in to unmask]> >> *Cc:* dpm-devel <mailto:[log in to unmask]> ; >> [log in to unmask] <mailto:[log in to unmask]> >> *Subject:* Re: Uploaded file 128TB on filesystem >> >> I just found one file where problem with offset occurred in the >> middle of transfer (not at the beginning): >> 190907 20:03:53 25211 XrootdXeq: atlasprd.2817:168@[2001:718:401:6e03::1:51] pub IP64 login as /DC=ch/DC=cern/OU=Organic Units/OU=Users/CN=atlpilo1/CN=614260/CN=Robot: ATLAS Pilot1 >> 190907 20:03:55 25211 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@0 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:03:55 25211 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@262144 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:03:55 25211 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@524288 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:03:55 25211 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@786432 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:03:55 25211 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@1048576 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> ... >> 190907 20:40:35 31589 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@2952003584 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:40:53 31589 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@2952265728 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:41:55 31609 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@2952265728 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> *190907 20:42:05 25089 atlasprd.2817:168@[2001:718:401:6e03::1:51] >> ofs_write: 1919238960@7379557499097268579 >> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload****190907 20:42:13 25118 atlasprd.2817:168@[2001:718:401:6e03::1:51] >> ofs_write: 1919238960@7379557499097268579 >> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload***190907 20:42:13 25118 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@2953314304 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:42:13 25118 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@2953576448 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> 190907 20:42:20 25118 atlasprd.2817:168@[2001:718:401:6e03::1:51] ofs_write: 262144@2953576448 fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_13TeV/9c/6a/AOD.18892557._000593.pool.root.1.rucio.upload >> Whole xrootd.log for this transfer available at >> http://novastore.farm.particle.cz/tmp/xrootd_bigfile_wrong_offset_in_the_middle_of_transfer.txt >> >> Petr >> >> On 9/8/19 10:25 AM, Petr Vokac wrote: >>> I executed basically following python code that from bash script in >>> a loop >>> import gfal2 >>> ctx = gfal2.creat_context() >>> ctx.set_opt_string("XROOTD PLUGIN", "XRD.WANTPROT", "gsi,unix") >>> params = ctx.transfer_parameters() >>> params.timeout = 60 >>> ctx.filecopy(params, "file:///tmp/1M", "root://golias100.farm.particle.cz/dpm/farm.particle.cz/home/atlas/1M") >>> and after a while new corrupted files appeared at our storage >>> including one big file: >>> [vokac@ui1 ~]$ gfal-ls -l 'davs://golias100.farm.particle.cz/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000' >>> -rw-rw-r-- 0 1310 5281 139703410778112 Sep 7 19:01 davs://golias100.farm.particle.cz/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> Now I have also debug output from gfal client including >>> XRD_LOGLEVEL=Dump + XRD_LOGMASK=All for this file with xrootd.log on >>> server side: >>> [root@dpmpool19 ~]$ grep condor.39253:171 /var/log/xrootd/dpmdisk/xrootd.log >>> 190907 19:01:19 29645 XrootdXeq: condor.39253:171@[2001:718:401:6e03::1:82] pub IP64 login as /DC=ch/DC=cern/OU=Organic Units/OU=Users/CN=vokac/CN=610071/CN=Petr Vokac >>> 190907 19:01:22 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 1009440128@139703410643808 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:23 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 131072@131072 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:23 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 131072@262144 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:24 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 131072@393216 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:24 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 131072@524288 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:25 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 131072@655360 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:25 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 131072@786432 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:25 32625 condor.39253:171@[2001:718:401:6e03::1:82] ofs_write: 131072@917504 fn=/dpm/farm.particle.cz/home/atlas/1M.01556.20190907190118.646902567.00000 >>> 190907 19:01:26 32625 XrootdXeq: condor.39253:171@[2001:718:401:6e03::1:82] disc 0:00:07 >>> This file was transferred from mff82.farm.particle.cz >>> (2001:718:401:6e03::1:82) to the storage dpmpool19.farm.particle.cz >>> (2001:718:401:6017:2::19) and both machines use >>> xrootd-4.9.1-1.el7.x86_64 and mff82 use gfal2-2.16.3-1.el7.x86_64 >>> >>> I also tried to calculate adler32 for data blocks from positions >>> logged by server and result match source data checksum. When I look >>> at other transfers finished with "SUCCESS" but with the filesize >>> different from source file I can see that problems always occurs >>> only with first "ofs_write" log line where size@offset contains >>> wrong numbers. >>> >>> Attached files: >>> >>> 1M.01556.20190907190118.646902567.00000.dump ... xrd with dump log level >>> 1M.01556.20190907190118.646902567.00000.log ... gfal2 verbose >>> logging (+ few log lines from my script) >>> 1M.01556.20190907190118.646902567.00000.xrootd.long ... dpmpool19 >>> xrootd.log >>> >>> I have more examples of successfully transferred files with wrong >>> size (sometimes bigger than original 1M size and sometimes smaller): >>> >>> 07 Sep 18:39:33.879 [ERROR] dpmpool1.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 18:40:45.039 [ERROR] dpmpool21.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 18:41:22.555 [ERROR] dpmpool21.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 18:41:39.248 [ERROR] dpmpool21.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 18:56:51.113 [ERROR] dpmpool24.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 18:58:04.436 [ERROR] dpmpool1.farm.particle.cz BAD SIZE 393194936 >>> 07 Sep 19:01:25.908 [ERROR] dpmpool19.farm.particle.cz BAD SIZE >>> 139703410778112 >>> 07 Sep 19:02:17.183 [ERROR] dpmpool24.farm.particle.cz BAD SIZE 0 >>> 07 Sep 19:02:53.014 [ERROR] dpmpool16.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 19:03:49.424 [ERROR] dpmpool1.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 19:05:47.743 [ERROR] dpmpool21.farm.particle.cz BAD SIZE 13983727 >>> 07 Sep 19:15:15.761 [ERROR] dpmpool22.farm.particle.cz BAD SIZE 12752345 >>> 07 Sep 19:16:58.898 [ERROR] dpmpool20.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 19:18:51.590 [ERROR] dpmpool17.farm.particle.cz BAD SIZE 6302080 >>> 07 Sep 19:20:37.006 [ERROR] dpmpool21.farm.particle.cz BAD SIZE >>> 1456153896 >>> 07 Sep 19:52:32.553 [ERROR] dpmpool16.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 19:53:45.155 [ERROR] dpmpool22.farm.particle.cz BAD SIZE >>> 1000000000 >>> 07 Sep 20:11:14.497 [ERROR] dpmpool22.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 20:12:51.081 [ERROR] dpmpool20.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 20:14:58.090 [ERROR] dpmpool20.farm.particle.cz BAD SIZE >>> 100663296 >>> 07 Sep 20:24:57.457 [ERROR] dpmpool1.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 20:27:37.596 [ERROR] dpmpool19.farm.particle.cz BAD SIZE 917504 >>> 07 Sep 20:28:21.617 [ERROR] dpmpool16.farm.particle.cz BAD SIZE 0 >>> >>> Petr >>> >>> On 9/5/19 2:44 PM, Petr Vokac wrote: >>>> I'm going to test in a loop uploads with this code and also enabled gfal >>>> debug logging from our remote machines that talks with storage through >>>> quite saturated network (we never saw same issue from cluster worker >>>> nodes that shares room with diskservers). I also saw few transfers that >>>> did not create big sparse file, but just failed while comparing >>>> checksums after upload and this is also quite suspicious behavior. >>>> >>>> Petr >>>> >>>> On 9/5/19 12:57 PM, andrea manzi wrote: >>>>>> Ciao Andrea, >>>>>> >>>>>> we practically do this: ctx = creat_context(... ctx.set_opt_string("XROOTD PLUGIN", "XRD.WANTPROT", "gsi,unix") ctx.mkdir_rec(... ctx.filecopy(.. >>>>>> >>>>>> Is that the gfal transfer API? >>>>> yup, internally in gfal2 we then use the XrdCl to perform the copy ( >>>>> both for local files and TPC) >>>>> >>>>> today is holiday but we can start investigating with Michal tomorrow >>>>> or Monday the possible issue >>>>> >>>>> cheers >>>>> >>>>> Andrea >>>>> >>>>>> Cheers, >>>>>> Mario >>>>>> >>>>>> >>>>>> >>>>>> On 05/09/2019 10:35, andrea manzi wrote: >>>>>>> ciao Mario, >>>>>>> >>>>>>> i guess you are using the gfal2 transfer API in Rucio right ? ( the >>>>>>> equivalent to gfal-copy) >>>>>>> >>>>>>> in gfal2, in the case of the transfer API for xrootd, we don't do >>>>>>> much >>>>>>> as we just use the xrootd client ( XrdCl::CopyProcess), so we don't >>>>>>> touch file offsets. >>>>>>> >>>>>>> so we may want to investigate if there is a problem in XrdCl. Do you >>>>>>> have the logs of the client? >>>>>>> >>>>>>> If you are using the gfal2 Posix API instead we need to investigate a >>>>>>> possible bug there >>>>>>> >>>>>>> cheers >>>>>>> >>>>>>> Andrea >>>>>>> >>>>>>> >>>>>>>> Hi Petr, Andy, >>>>>>>> >>>>>>>> once extra piece of information here: Rucio uses the python >>>>>>>> bindings to >>>>>>>> the gfal library to upload these files, and de-facto always uses the >>>>>>>> current stable gfal version that is published on ALRB. Rucio doesn't >>>>>>>> implement any other upload by itself. >>>>>>>> >>>>>>>> Cheers, >>>>>>>> Mario >>>>>>>> >>>>>>>> On 05/09/2019 04:21, Andrew Hanushevsky wrote: >>>>>>>>> Hi Petr, So, look at this line: 190904 17:02:16 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 1784104010@6506989258351653185 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> >>>>>>>>> Why did the application doing the write specify an offset of >>>>>>>>> 5506989258351653185? So, that is the problem and, as you noted, it >>>>>>>>> doesn’t matter whether POSC is on or not. Indeed, it’s the first >>>>>>>>> write >>>>>>>>> to the file and only the first write that suffers from this >>>>>>>>> problem. So, >>>>>>>>> there are two possibilities here: a) there is a bug in the >>>>>>>>> uploader, or >>>>>>>>> b) there was a network data corruption that managed to hit the offset >>>>>>>>> (somewhat unlikely). Andy *From:* Petr Vokac mailto:[log in to unmask] >>>>>>>>> *Sent:* Wednesday, September 04, 2019 12:19 PM >>>>>>>>> *To:* Andrew Hanushevsky mailto:[log in to unmask] >>>>>>>>> *Cc:* dpm-devel mailto:[log in to unmask] ; >>>>>>>>> [log in to unmask] >>>>>>>>> mailto:[log in to unmask] >>>>>>>>> *Subject:* Re: Uploaded file 128TB on filesystem I configured our diskservers with "ofs.trace write" (I did not >>>>>>>>> yet add >>>>>>>>> in xrootd configuraton "ofs.persist hold 0") and today new file >>>>>>>>> appeared >>>>>>>>> on one of our storage servers: >>>>>>>>> >>>>>>>>> *[root@dpmpool1 ~]# grep atlasprd.2817:152 >>>>>>>>> /var/log/xrootd/dpmdisk/xrootd.log* >>>>>>>>> 190904 17:02:08 1894 XrootdXeq: >>>>>>>>> atlasprd.2817:152@[2001:718:401:6e03::1:82] pub IP64 login as >>>>>>>>> /DC=ch/DC=cern/OU=Organic >>>>>>>>> Units/OU=Users/CN=atlpilo1/CN=614260/CN=Robot: ATLAS Pilot1 >>>>>>>>> 190904 17:02:16 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 1784104010@6506989258351653185 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:16 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 262144@262144 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:17 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 262144@524288 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:17 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 262144@786432 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:17 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 262144@1048576 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:17 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 262144@1310720 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:17 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 262144@1572864 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:17 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 262144@1835008 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:02:17 22915 atlasprd.2817:152@[2001:718:401:6e03::1:82] >>>>>>>>> ofs_write: 135000@2097152 >>>>>>>>> fn=/dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_5TeV/90/9f/EVNT.18960107._035789.pool.root.1.rucio.upload >>>>>>>>> 190904 17:07:32 2163 XrootdXeq: >>>>>>>>> atlasprd.2817:152@[2001:718:401:6e03::1:82] disc 0:05:24 >>>>>>>>> >>>>>>>>> *[root@dpmpool1 ~]# ls -la >>>>>>>>> /mnt/fs2/atlas/2019-09-04/EVNT.18960107._035789.pool.root.1.rucio.upload.309650.1567609328* >>>>>>>>> >>>>>>>>> -rw-rw---- 1 dpmmgr dpmmgr 6506989258351919104 Sep 4 17:02 >>>>>>>>> /mnt/fs2/atlas/2019-09-04/EVNT.18960107._035789.pool.root.1.rucio.upload.309650.1567609328 >>>>>>>>> >>>>>>>>> *[root@dpmpool1 ~]# du --block-size=1 >>>>>>>>> /mnt/fs2/atlas/2019-09-04/EVNT.18960107._035789.pool.root.1.rucio.upload.309650.1567609328* >>>>>>>>> >>>>>>>>> 2236416 /mnt/fs2/atlas/2019-09-04/EVNT.18960107._035789.pool.root.1.rucio.upload.309650.1567609328 >>>>>>>>> >>>>>>>>> This file has first 256kb filled with 0x00 (adler32 up to original >>>>>>>>> size >>>>>>>>> 2232152 doesn't match) and this time there is no ofs_Posc in the >>>>>>>>> xrootd.log file. >>>>>>>>> >>>>>>>>> Petr Vokac >>>>>>>>> >>>>>>>>> On 8/19/19 3:24 AM, Andrew Hanushevsky wrote: >>>>>>>>>> Hi Petr, >>>>>>>>>> >>>>>>>>>> The issue here is that the python script (I believe it's python) is >>>>>>>>>> disconnecting without closing the file and then reconnecting and >>>>>>>>>> writing at a high offset. The log is pretty clear on that. You can >>>>>>>>>> verify by adding "ofs.trace write" to see the write offsets >>>>>>>>>> (hough it >>>>>>>>>> will produce a lot of output). You can also prohibit reconnection by >>>>>>>>>> adding this to the persist directive. >>>>>>>>>> >>>>>>>>>> ofs.persist hold 0 >>>>>>>>>> >>>>>>>>>> which would delete the file the moment the client disconnects >>>>>>>>>> without >>>>>>>>>> closing the file. >>>>>>>>>> >>>>>>>>>> Andy >>>>>>>>>> >>>>>>>>>> On Sat, 17 Aug 2019, Petr Vokac wrote: >>>>>>>>>> >>>>>>>>>>> Today new "65PB" file appeared on our storage and it was again >>>>>>>>>>> transferred with xrootd protocol. I can see again same error in >>>>>>>>>>> the log >>>>>>>>>>> file: >>>>>>>>>>> >>>>>>>>>>> **[root@dpmpool21 ~]# ls -la >>>>>>>>>>> /mnt/fs4/atlas/2019-08-17/EVNT.18893579._003197.pool.root.1.rucio.upload.234855.1566031522* >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> *-rw-rw---- 1 dpmmgr dpmmgr 72340172838077281 Aug 17 10:48 >>>>>>>>>>> /mnt/fs4/atlas/2019-08-17/EVNT.18893579._003197.pool.root.1.rucio.upload.234855.1566031522 >>>>>>>>>>> >>>>>>>>>>> ***[root@dpmpool21 ~]# grep atlasprd.2757 >>>>>>>>>>> /var/log/xrootd/dpmdisk/xrootd.log* >>>>>>>>>>> ... >>>>>>>>>>> 190817 10:47:55 57803 XrootdXeq: >>>>>>>>>>> atlasprd.2757:65@[2001:718:401:6e03::1:43] pub IP64 login as >>>>>>>>>>> /DC=ch/DC=cern/OU=Organic >>>>>>>>>>> Units/OU=Users/CN=atlpilo1/CN=614260/CN=Robot: ATLAS Pilot1 >>>>>>>>>>> 190817 10:47:55 61859 XrootdXeq: >>>>>>>>>>> atlasprd.2757:66@[2001:718:401:6e03::1:83] pub IP64 login as >>>>>>>>>>> /DC=ch/DC=cern/OU=Organic >>>>>>>>>>> Units/OU=Users/CN=atlpilo1/CN=614260/CN=Robot: ATLAS Pilot1 >>>>>>>>>>> 190817 10:48:52 62233 XrootdXeq: >>>>>>>>>>> atlasprd.2757:46@[2001:718:401:6e03::1:72] disc 0:00:58 >>>>>>>>>>> 190817 10:48:52 62954 XrootdXeq: >>>>>>>>>>> atlasprd.2757:25@[2001:718:401:6e03::1:72] disc 0:03:30 >>>>>>>>>>> 190817 10:48:52 57804 XrootdXeq: >>>>>>>>>>> atlasprd.2757:28@[2001:718:401:6e03::1:72] pub IP64 login as >>>>>>>>>>> /DC=ch/DC=cern/OU=Organic >>>>>>>>>>> Units/OU=Users/CN=atlpilo1/CN=614260/CN=Robot: ATLAS Pilot1 >>>>>>>>>>> 190817 10:48:52 57804 ofs_Posc: Creator changed from >>>>>>>>>>> atlasprd.2757:25@[2001:718:401:6e03::1:72] to >>>>>>>>>>> atlasprd.2757:28@[2001:718:401:6e03::1:72] for >>>>>>>>>>> /dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_13TeV/8b/f3/EVNT.18893579._003197.pool.root.1.rucio.upload >>>>>>>>>>> >>>>>>>>>>> 190817 10:48:53 57803 XrootdXeq: >>>>>>>>>>> atlasprd.2757:46@[2001:718:401:6017:20:0:14:44] pub IP64 login as >>>>>>>>>>> /DC=ch/DC=cern/OU=Organic >>>>>>>>>>> Units/OU=Users/CN=atlpilo1/CN=614260/CN=Robot: ATLAS Pilot1 >>>>>>>>>>> 190817 10:49:01 57818 XrootdXeq: >>>>>>>>>>> atlasprd.2757:70@[2001:718:401:6017:20:0:11:11] pub IP64 login as >>>>>>>>>>> /DC=ch/DC=cern/OU=Organic >>>>>>>>>>> Units/OU=Users/CN=atlpilo1/CN=614260/CN=Robot: ATLAS Pilot1 >>>>>>>>>>> 190817 10:49:07 62954 XrootdXeq: >>>>>>>>>>> atlasprd.2757:55@[2001:718:401:6e03::1:81] disc 0:10:17 >>>>>>>>>>> ... >>>>>>>>>>> >>>>>>>>>>> Any suggestion how to trace what is causing this behavior? >>>>>>>>>>> >>>>>>>>>>> Petr >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> On 7/20/19 7:48 AM, Petr Vokac wrote: >>>>>>>>>>>> Hi, >>>>>>>>>>>> >>>>>>>>>>>> I ran the command you sent me >>>>>>>>>>>> >>>>>>>>>>>> grep "atlasprd.2757:" <logfile> | egrep >>>>>>>>>>>> '2001:718:401:6e03::1:21|2001:718:401:6e03::1:32' > <excerpt> >>>>>>>>>>>> >>>>>>>>>>>> and because the output was not just few lines long I uploaded >>>>>>>>>>>> it to the >>>>>>>>>>>> >>>>>>>>>>>> https://vokac.web.cern.ch/vokac/tmp/dpmpool22.xrootd.log >>>>>>>>>>>> https://vokac.web.cern.ch/vokac/tmp/dpmpool24.xrootd.log >>>>>>>>>>>> >>>>>>>>>>>> These machines on 2001:718:401:6e03::/64 subnet are in remote >>>>>>>>>>>> location >>>>>>>>>>>> (but relatively close with RTT ~ 0.7ms). I can see several >>>>>>>>>>>> ofs_Posc >>>>>>>>>>>> occurrences in the logs of our disknodes during "190717 >>>>>>>>>>>> 17:xx:xx" time >>>>>>>>>>>> period: >>>>>>>>>>>> >>>>>>>>>>>> http://vokac.web.cern.ch/vokac/tmp/POSC.txt >>>>>>>>>>>> >>>>>>>>>>>> Petr >>>>>>>>>>>> >>>>>>>>>>>> On 7/19/19 8:51 PM, Andrew Hanushevsky wrote: >>>>>>>>>>>>> Hi Petr, >>>>>>>>>>>>> >>>>>>>>>>>>> Well, POSC says that the client reconnected for writing so not >>>>>>>>>>>>> all >>>>>>>>>>>>> went well. Can I get the log output for that occurrence as I >>>>>>>>>>>>> previously described? >>>>>>>>>>>>> >>>>>>>>>>>>> Andy >>>>>>>>>>>>> >>>>>>>>>>>>> On Fri, 19 Jul 2019, Petr Vokac wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> We are using Rucio download client to transfer job outputs >>>>>>>>>>>>>> (it is >>>>>>>>>>>>>> build >>>>>>>>>>>>>> on top of gfal2 python interface). >>>>>>>>>>>>>> >>>>>>>>>>>>>> https://vokac.web.cern.ch/vokac/tmp/dpmpool22.xrootd.log >>>>>>>>>>>>>> https://vokac.web.cern.ch/vokac/tmp/dpmpool24.xrootd.log >>>>>>>>>>>>>> >>>>>>>>>>>>>> this is the full job output unfortunately with minimal gfal2 >>>>>>>>>>>>>> logging >>>>>>>>>>>>>> output. >>>>>>>>>>>>>> >>>>>>>>>>>>>> https://vokac.web.cern.ch/vokac/tmp/grid.2258136.4.out-from-2001:718:401:6e03::1:21-to-dpmpool22.txt >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> https://vokac.web.cern.ch/vokac/tmp/grid.2255921.7.out-from-2001:718:401:6e03::1:32-to-dpmpool24.txt >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> It looks like according gfal2 transfer was OK >>>>>>>>>>>>>> >>>>>>>>>>>>>> 2019-07-17 15:09:17,782 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_xrootd.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,782 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_rfio.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,783 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_gridftp.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,783 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_http.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,783 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_lfc.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,783 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_file.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,784 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_sftp.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,784 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_dcap.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,784 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_srm.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,793 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_xrootd.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,793 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_rfio.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,793 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_gridftp.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,794 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_http.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,794 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_lfc.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,794 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_file.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,794 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_sftp.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,794 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_dcap.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,794 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_srm.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,795 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_xrootd.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,795 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_rfio.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,795 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_gridftp.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,795 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_http.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,796 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_lfc.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,796 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_file.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,796 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_sftp.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,796 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_dcap.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,796 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | connect | >>>>>>>>>>>>>> [gfal_module_load] plugin >>>>>>>>>>>>>> /usr/lib64/gfal2-plugins//libgfal_plugin_srm.so loaded with >>>>>>>>>>>>>> success >>>>>>>>>>>>>> 2019-07-17 15:09:17,810 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | __gfal2_copy | Event >>>>>>>>>>>>>> triggered: BOTH GFAL2:CORE:COPY LIST:ENTER >>>>>>>>>>>>>> 2019-07-17 15:09:17,810 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | __gfal2_copy | Event >>>>>>>>>>>>>> triggered: BOTH GFAL2:CORE:COPY LIST:ITEM >>>>>>>>>>>>>> file:///scratch/condor/dir_24031/atlas_HudmF2he/PanDA_Pilot-4419868006/log.18636890._001059.job.log.tgz.1 >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> => >>>>>>>>>>>>>> root://golias100.farm.particle.cz:1094//dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_13TeV/26/98/log.18636890._001059.job.log.tgz.1.rucio.upload >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> 2019-07-17 15:09:17,810 | INFO | copytool_out | >>>>>>>>>>>>>> gfal2 | __gfal2_copy | Event >>>>>>>>>>>>>> triggered: BOTH GFAL2:CORE:COPY LIST:EXIT >>>>>>>>>>>>>> 2019-07-17 15:09:17,811 | INFO | Dummy-2 | >>>>>>>>>>>>>> gfal2 | (unknown function) | Event >>>>>>>>>>>>>> triggered: BOTH xroot TRANSFER:ENTER >>>>>>>>>>>>>> file://localhost///scratch/condor/dir_24031/atlas_HudmF2he/PanDA_Pilot-4419868006/log.18636890._001059.job.log.tgz.1?xrd.gsiusrpxy=/scratch/condor/dir_24031/job.9XONDm6yx7unnoBGSqYX2MjnABFKDmABFKDmSyhTDmEBFKDmqAGN3n.proxy&xrd.wantprot=gsi,unix >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> => >>>>>>>>>>>>>> root://golias100.farm.particle.cz:1094///dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_13TeV/26/98/log.18636890._001059.job.log.tgz.1.rucio.upload?xrd.gsiusrpxy=/scratch/condor/dir_24031/job.9XONDm6yx7unnoBGSqYX2MjnABFKDmABFKDmSyhTDmEBFKDmqAGN3n.proxy&x >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> 2019-07-17 15:09:17,811 | INFO | Dummy-2 | >>>>>>>>>>>>>> gfal2 | (unknown function) | Event >>>>>>>>>>>>>> triggered: BOTH xroot TRANSFER:TYPE streamed >>>>>>>>>>>>>> 2019-07-17 15:11:23,914 | INFO | Dummy-2 | >>>>>>>>>>>>>> gfal2 | (unknown function) | Event >>>>>>>>>>>>>> triggered: BOTH xroot TRANSFER:EXIT Job finished, [SUCCESS] >>>>>>>>>>>>>> >>>>>>>>>>>>>> but probably rucio tries to verify checksum (gfal-sum via python >>>>>>>>>>>>>> bindings) and it fails >>>>>>>>>>>>>> >>>>>>>>>>>>>> 2019-07-17 15:15:23,774 | INFO | copytool_out | >>>>>>>>>>>>>> pilot.copytool.rucio | copy_out | >>>>>>>>>>>>>> stderr = An unknown exception occurred. >>>>>>>>>>>>>> Details: Checksum not validated >>>>>>>>>>>>>> >>>>>>>>>>>>>> because DPM is unable to calculate checksum for 128TB file >>>>>>>>>>>>>> within >>>>>>>>>>>>>> timeout. >>>>>>>>>>>>>> >>>>>>>>>>>>>> Petr >>>>>>>>>>>>>> >>>>>>>>>>>>>> On 7/19/19 5:07 AM, Andrew Hanushevsky wrote: >>>>>>>>>>>>>>> Hi Petr, >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Indeed, it looks like what was used to upload the files >>>>>>>>>>>>>>> (xrdcp?) >>>>>>>>>>>>>>> created a very large sparse file by writing with a very large >>>>>>>>>>>>>>> offset. >>>>>>>>>>>>>>> The clue here is that an anomaly occurred during the write >>>>>>>>>>>>>>> and these >>>>>>>>>>>>>>> two messages (lkely each corresponding to each file) tell us >>>>>>>>>>>>>>> something.... >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> 190717 17:10:39 332092 ofs_Posc: Creator changed from >>>>>>>>>>>>>>> atlasprd.2757:90@[2001:718:401:6e03::1:21] to atlasprd.2757:39@[2001:718:401:6e03::1:21] for /dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_13TeV/26/98/ log.18636890._001059.job.log.tgz.1.rucio.upload >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> 190717 17:29:26 14204 ofs_Posc: Creator changed from >>>>>>>>>>>>>>> atlasprd.2757:33@[2001:718:401:6e03::1:32] to atlasprd.2757:95@[2001:718:401:6e03::1:32] for /dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_5TeV/09/bc/ AOD.18595963._000786.pool.root.1.rucio.upload >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> What the POSC system is saying is that in each case the >>>>>>>>>>>>>>> original >>>>>>>>>>>>>>> creator of the file lost contact with the server. It then >>>>>>>>>>>>>>> reconnected >>>>>>>>>>>>>>> and resumed writing with a successful close. POSC allows >>>>>>>>>>>>>>> this to >>>>>>>>>>>>>>> avoid >>>>>>>>>>>>>>> network glitches from deleting a file because a network >>>>>>>>>>>>>>> glitch will >>>>>>>>>>>>>>> cause the client to reconnect and resume where it left off. >>>>>>>>>>>>>>> This is >>>>>>>>>>>>>>> only allowed when the resuming client comes from the same IP >>>>>>>>>>>>>>> address, >>>>>>>>>>>>>>> has the same process ID, and the same logical name. In this >>>>>>>>>>>>>>> case it >>>>>>>>>>>>>>> was "atlasprd.2757". I find that rather odd because it's >>>>>>>>>>>>>>> next to >>>>>>>>>>>>>>> impossible for two processes on two different machines to >>>>>>>>>>>>>>> have the >>>>>>>>>>>>>>> same process number (i.e. 2757). So, this is why I am >>>>>>>>>>>>>>> wondering if >>>>>>>>>>>>>>> this was really an xrdcp or some other program. >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> We should look to see what these client were actually doing >>>>>>>>>>>>>>> during >>>>>>>>>>>>>>> this period as they clearly did not do the right thing when >>>>>>>>>>>>>>> they >>>>>>>>>>>>>>> reconnected. So, could you grep out all interactions of >>>>>>>>>>>>>>> these two >>>>>>>>>>>>>>> client from the log. Something like: >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> grep "atlasprd.2757:" <logfile> | egrep >>>>>>>>>>>>>>> '2001:718:401:6e03::1:21|2001:718:401:6e03::1:32' > <excerpt> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> and send the excerpt to me? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Andy >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> On Thu, 18 Jul 2019, Petr Vokac wrote: >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Hi, >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> our DPM which is using native xrootd 4.9.1 yesterday >>>>>>>>>>>>>>>> created two >>>>>>>>>>>>>>>> different 128TB files on two different diskservers that were >>>>>>>>>>>>>>>> received as >>>>>>>>>>>>>>>> a job output from two different worker nodes. The size of >>>>>>>>>>>>>>>> original >>>>>>>>>>>>>>>> file >>>>>>>>>>>>>>>> was few megabytes and when I check beginning of stored >>>>>>>>>>>>>>>> files up to >>>>>>>>>>>>>>>> original size & checksum everything seems to be OK - except >>>>>>>>>>>>>>>> these are >>>>>>>>>>>>>>>> sparse files with size 128TB. Original transferred files >>>>>>>>>>>>>>>> from WN >>>>>>>>>>>>>>>> looked >>>>>>>>>>>>>>>> like: >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> mc15_13TeV:log.18636890._001059.job.log.tgz.1 - original size >>>>>>>>>>>>>>>> 3101899, adler32 742e1336 >>>>>>>>>>>>>>>> mc16_5TeV:AOD.18595963._000786.pool.root.1 - original size >>>>>>>>>>>>>>>> 737474514, >>>>>>>>>>>>>>>> adler32 dc68cb21 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> but on our diskservers they were stored as >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> [root@dpmpool22 ~]# ls -l >>>>>>>>>>>>>>>> /mnt/fs1/atlas/2019-07-17/log.18636890._001059.job.log.tgz.1.rucio.upload.209928.1563376157 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> -rw-rw---- 1 dpmmgr dpmmgr 140560257079236 Jul 17 17:11 >>>>>>>>>>>>>>>> /mnt/fs1/atlas/2019-07-17/log.18636890._001059.job.log.tgz.1.rucio.upload.209928.1563376157 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> [root@dpmpool22 ~]# du --block-size=1 >>>>>>>>>>>>>>>> /mnt/fs1/atlas/2019-07-17/log.18636890._001059.job.log.tgz.1.rucio.upload.209928.1563376157 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> 3108864 >>>>>>>>>>>>>>>> /mnt/fs1/atlas/2019-07-17/log.18636890._001059.job.log.tgz.1.rucio.upload.209928.1563376157 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> [root@dpmpool24 ~]# ls -l >>>>>>>>>>>>>>>> /mnt/fs2/atlas/2019-07-17/AOD.18595963._000786.pool.root.1.rucio.upload.210480.1563377083 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> -rw-rw---- 1 dpmmgr dpmmgr 139734345056408 Jul 17 17:31 >>>>>>>>>>>>>>>> /mnt/fs2/atlas/2019-07-17/AOD.18595963._000786.pool.root.1.rucio.upload.210480.1563377083 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> [root@dpmpool24 tmp]# du --block-size=1 >>>>>>>>>>>>>>>> /mnt/fs2/atlas/2019-07-17/AOD.18595963._000786.pool.root.1.rucio.upload.210480.1563377083 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> 737480704 >>>>>>>>>>>>>>>> /mnt/fs2/atlas/2019-07-17/AOD.18595963._000786.pool.root.1.rucio.upload.210480.1563377083 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> I was told that DPM is not really involved in transfering / >>>>>>>>>>>>>>>> storing >>>>>>>>>>>>>>>> files with xrootd protocol, so I guess something bad must >>>>>>>>>>>>>>>> happened >>>>>>>>>>>>>>>> inside XRootD libraries. Do you have any idea why these two >>>>>>>>>>>>>>>> transfers >>>>>>>>>>>>>>>> generated such extreme files? Unfortunately our xrootd >>>>>>>>>>>>>>>> logging is >>>>>>>>>>>>>>>> pretty >>>>>>>>>>>>>>>> low and I was able to find only info about file creation >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> [root@dpmpool22 ~]# grep log.18636890._001059.job.log.tgz >>>>>>>>>>>>>>>> /var/log/xrootd/dpmdisk/xrootd.log >>>>>>>>>>>>>>>> 190717 17:10:39 332092 ofs_Posc: Creator changed from >>>>>>>>>>>>>>> atlasprd.2757:90@[2001:718:401:6e03::1:21] to atlasprd.2757:39@[2001:718:401:6e03::1:21] for /dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc15_13TeV/26/98/ log.18636890._001059.job.log.tgz.1.rucio.upload >>>>>>>>>>>>>>>> [root@dpmpool24 tmp]# grep AOD.18595963._000786.pool.root >>>>>>>>>>>>>>>> /var/log/xrootd/dpmdisk/xrootd.log >>>>>>>>>>>>>>>> 190717 17:29:26 14204 ofs_Posc: Creator changed from >>>>>>>>>>>>>>> atlasprd.2757:33@[2001:718:401:6e03::1:32] to atlasprd.2757:95@[2001:718:401:6e03::1:32] for /dpm/farm.particle.cz/home/atlas/atlasdatadisk/rucio/mc16_5TeV/09/bc/AOD.18595963. _000786.pool.root.1.rucio.upload >>>>>>>>>>>>>>>> Petr >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> ######################################################################## >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Use REPLY-ALL to reply to list >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> To unsubscribe from the XROOTD-L list, click the following >>>>>>>>>>>>>>>> link: >>>>>>>>>>>>>>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>> ######################################################################## >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Use REPLY-ALL to reply to list >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> To unsubscribe from the XROOTD-L list, click the following >>>>>>>>>>>>>>> link: >>>>>>>>>>>>>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>>>>>>>>>>>>>> >>>>>>>>>>>>> ######################################################################## >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> Use REPLY-ALL to reply to list >>>>>>>>>>>>> >>>>>>>>>>>>> To unsubscribe from the XROOTD-L list, click the following link: >>>>>>>>>>>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>>>>>>>>>>> ------------------------------------------------------------------------ >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> Use REPLY-ALL to reply to list >>>>>>>>>>>> >>>>>>>>>>>> To unsubscribe from the XROOTD-L list, click the following link: >>>>>>>>>>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>>>>>>>>>>> >>>>>>>>> ------------------------------------------------------------------------ >>>>>>>>> >>>>>>>>> >>>>>>>>> Use REPLY-ALL to reply to list >>>>>>>>> >>>>>>>>> To unsubscribe from the XROOTD-L list, click the following link: >>>>>>>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>>>>>>>> >>>>> ######################################################################## >>>>> Use REPLY-ALL to reply to list >>>>> >>>>> To unsubscribe from the XROOTD-L list, click the following link: >>>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>>> ######################################################################## >>>> Use REPLY-ALL to reply to list >>>> >>>> To unsubscribe from the XROOTD-L list, click the following link: >>>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>> >>> >>> ------------------------------------------------------------------------ >>> >>> Use REPLY-ALL to reply to list >>> >>> To unsubscribe from the XROOTD-L list, click the following link: >>> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >>> >> >> >> ------------------------------------------------------------------------ >> >> Use REPLY-ALL to reply to list >> >> To unsubscribe from the XROOTD-L list, click the following link: >> https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 >> > > > ------------------------------------------------------------------------ > > Use REPLY-ALL to reply to list > > To unsubscribe from the XROOTD-L list, click the following link: > https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1 > ######################################################################## Use REPLY-ALL to reply to list To unsubscribe from the XROOTD-L list, click the following link: https://listserv.slac.stanford.edu/cgi-bin/wa?SUBED1=XROOTD-L&A=1